Stderr output

<core_client_version>8.0.2</core_client_version>
<![CDATA[
<stderr_txt>
2025-10-10 20:28:02 (12580): vboxwrapper version 26210
2025-10-10 20:28:02 (12580): BOINC client version: 8.0.2
2025-10-10 20:28:04 (12580): Detected: VirtualBox VboxManage Interface (Version: 6.1.18)
2025-10-10 20:28:04 (12580): Successfully copied 'init_data.xml' to the shared directory.
2025-10-10 20:28:04 (12580): Create VM. (boinc_6f88eafde99e5530, slot#0)
2025-10-10 20:28:05 (12580): Setting Memory Size for VM. (5900MB)
2025-10-10 20:28:05 (12580): Setting CPU Count for VM. (2)
2025-10-10 20:28:05 (12580): Setting Chipset Options for VM.
2025-10-10 20:28:06 (12580): Setting Graphics Controller Options for VM. (Driver: VBoxVGA, 16MB)
2025-10-10 20:28:06 (12580): Setting Boot Options for VM.
2025-10-10 20:28:07 (12580): Setting Network Configuration for NAT. (Driver: virtio)
2025-10-10 20:28:07 (12580): Enabling VM Network Access.
2025-10-10 20:28:07 (12580): Disabling USB Support for VM.
2025-10-10 20:28:07 (12580): Disabling COM Port Support for VM.
2025-10-10 20:28:08 (12580): Disabling LPT Port Support for VM.
2025-10-10 20:28:08 (12580): Disabling Audio Support for VM.
2025-10-10 20:28:08 (12580): Disabling Clipboard Support for VM.
2025-10-10 20:28:09 (12580): Disabling Drag and Drop Support for VM.
2025-10-10 20:28:09 (12580): Adding storage controller(s) to VM.
2025-10-10 20:28:09 (12580): Adding virtual disk drive to VM. (ATLAS_vbox_3.03_image.vdi)
2025-10-10 20:28:10 (12580): Adding VirtualBox Guest Additions to VM.
2025-10-10 20:28:10 (12580): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-10-10 20:28:11 (12580): forwarding host port 51064 to guest port 80
2025-10-10 20:28:11 (12580): Enabling remote desktop for VM.
2025-10-10 20:28:12 (12580): Enabling shared directory for VM.
2025-10-10 20:28:12 (12580): Starting VM using VBoxManage interface. (boinc_6f88eafde99e5530, slot#0)
2025-10-10 20:28:20 (12580): Successfully started VM. (PID = '3492')
2025-10-10 20:28:20 (12580): Reporting VM Process ID to BOINC.
2025-10-10 20:28:20 (12580): Guest Log: BIOS: VirtualBox 6.1.18
2025-10-10 20:28:20 (12580): Guest Log: CPUID EDX: 0x178bfbff
2025-10-10 20:28:20 (12580): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-10-10 20:28:20 (12580): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-10-10 20:28:20 (12580): VM state change detected. (old = 'poweredoff', new = 'running')
2025-10-10 20:28:20 (12580): Detected: Web Application Enabled (http://localhost:51064)
2025-10-10 20:28:20 (12580): Detected: Remote Desktop Enabled (localhost:51065)
2025-10-10 20:28:20 (12580): Preference change detected
2025-10-10 20:28:20 (12580): Setting CPU throttle for VM. (100%)
2025-10-10 20:28:20 (12580): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 300 seconds) or (Vbox_job.xml: 900 seconds))
2025-10-10 20:28:22 (12580): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-10-10 20:28:22 (12580): Guest Log: BIOS: Booting from Hard Disk...
2025-10-10 20:28:25 (12580): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-10-10 20:28:25 (12580): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-10-10 20:28:25 (12580): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-10-10 20:28:25 (12580): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-10-10 20:28:25 (12580): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-10-10 20:28:25 (12580): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-10-10 20:28:25 (12580): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-10-10 20:28:25 (12580): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-10-10 20:28:25 (12580): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-10-10 20:28:25 (12580): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-10-10 20:28:25 (12580): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-10-10 20:28:25 (12580): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-10-10 20:28:25 (12580): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-10-10 20:28:25 (12580): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-10-10 20:28:25 (12580): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-10-10 20:28:25 (12580): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-10-10 20:28:25 (12580): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-10-10 20:28:25 (12580): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-10-10 20:28:25 (12580): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-10-10 20:28:25 (12580): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-10-10 20:28:25 (12580): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-10-10 20:28:25 (12580): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-10-10 20:28:25 (12580): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-10-10 20:28:25 (12580): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-10-10 20:28:25 (12580): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-10-10 20:28:25 (12580): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-10-10 20:28:25 (12580): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-10-10 20:28:25 (12580): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-10-10 20:28:25 (12580): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-10-10 20:28:25 (12580): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-10-10 20:28:25 (12580): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-10-10 20:28:25 (12580): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-10-10 20:28:33 (12580): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-10-10 20:28:33 (12580): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0000000 (size 0x400000)
2025-10-10 20:28:46 (12580): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-10-10 20:28:46 (12580): Guest Log: 00:00:00.000265 main     Log opened 2025-10-10T20:28:44.605423000Z
2025-10-10 20:28:46 (12580): Guest Log: 00:00:00.000425 main     OS Product: Linux
2025-10-10 20:28:46 (12580): Guest Log: 00:00:00.000553 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-10-10 20:28:46 (12580): Guest Log: 00:00:00.000608 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-10-10 20:28:46 (12580): Guest Log: 00:00:00.000653 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-10-10 20:28:46 (12580): Guest Log: 00:00:00.000654 main     Process ID: 1323
2025-10-10 20:28:46 (12580): Guest Log: 00:00:00.000655 main     Package type: LINUX_64BITS_GENERIC
2025-10-10 20:28:46 (12580): Guest Log: 00:00:00.003173 main     5.2.32 r132073 started. Verbose level = 0
2025-10-10 20:28:46 (12580): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-10-10 20:28:46 (12580): Guest Log: [INFO] Mounting shared directory
2025-10-10 20:28:46 (12580): Guest Log: [INFO] Checking for init_data.xml
2025-10-10 20:28:50 (12580): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-10-10 20:28:50 (12580): Guest Log: [INFO] Detected branch: prod
2025-10-10 20:28:51 (12580): Guest Log: This is the prod version of the ATLAS job wrapper
2025-10-10 20:28:51 (12580): Guest Log: Copying input files
2025-10-10 20:28:55 (12580): Guest Log: Copied input files into RunAtlas.
2025-10-10 20:28:55 (12580): Guest Log: Detected user-configured HTTP proxy at http://192.168.0.39:3128 - will set in /etc/cvmfs/default.local
2025-10-10 20:28:56 (12580): Guest Log: 00:00:10.008648 timesync vgsvcTimeSyncWorker: Radical guest time change: -7 188 970 878 000ns (GuestNow=1 760 120 935 641 446 000 ns GuestLast=1 760 128 124 612 324 000 ns fSetTimeLastLoop=true )
2025-10-10 20:29:10 (12580): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-10-10 20:29:11 (12580): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-10-10 20:29:11 (12580): Guest Log: 2.6.3.0 1598 0 31552 151558 3 1 3117639 4096000 0 65024 0 0 n/a 0 0 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.0.39:3128 1
2025-10-10 20:29:13 (12580): Guest Log: copied the webapp to /var/www
2025-10-10 20:29:13 (12580): Guest Log: ATHENA_PROC_NUMBER=2
2025-10-10 20:29:13 (12580): Guest Log: ATHENA_CORE_NUMBER=2
2025-10-10 20:29:13 (12580): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-10-10 20:29:13 (12580): Guest Log:  *** Starting ATLAS job. (PandaID=6837331667 taskID=46676269) ***
2025-10-10 20:49:54 (12580): VM state change detected. (old = 'running', new = 'paused')
2025-10-10 20:50:14 (12580): VM state change detected. (old = 'paused', new = 'running')
2025-10-10 20:50:28 (12580): VM state change detected. (old = 'running', new = 'paused')
2025-10-10 20:50:44 (12580): VM state change detected. (old = 'paused', new = 'running')
2025-10-10 22:09:20 (12580): Status Report: Elapsed Time: '6000.000000'
2025-10-10 22:09:20 (12580): Status Report: CPU Time: '11313.093750'
2025-10-10 23:49:30 (12580): Status Report: Elapsed Time: '12000.000000'
2025-10-10 23:49:30 (12580): Status Report: CPU Time: '23249.843750'
2025-10-11 01:29:40 (12580): Status Report: Elapsed Time: '18000.000000'
2025-10-11 01:29:40 (12580): Status Report: CPU Time: '35190.296875'
2025-10-11 03:09:51 (12580): Status Report: Elapsed Time: '24000.000000'
2025-10-11 03:09:51 (12580): Status Report: CPU Time: '47128.062500'
2025-10-11 04:50:01 (12580): Status Report: Elapsed Time: '30000.000000'
2025-10-11 04:50:01 (12580): Status Report: CPU Time: '59071.031250'
2025-10-11 06:30:11 (12580): Status Report: Elapsed Time: '36000.075838'
2025-10-11 06:30:11 (12580): Status Report: CPU Time: '71008.156250'
2025-10-11 06:50:11 (12580): Guest Log:  *** Job finished ***
2025-10-11 06:50:11 (12580): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-10-11 06:50:11 (12580): Guest Log: 2025-10-11 04:49:30,399 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
2025-10-11 06:50:11 (12580): Guest Log: 2025-10-11 04:49:30,399 | WARNING  | will wait for a maximum of 300 s for threads to finish
2025-10-11 06:50:11 (12580): Guest Log: 2025-10-11 04:49:45,925 | INFO     | [monitor] cgroup control has ended
2025-10-11 06:50:11 (12580): Guest Log: 2025-10-11 04:49:46,271 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139874636154688)>', '<ExcThread(monitor, started 139874032137984)>']
2025-10-11 06:50:11 (12580): Guest Log: 2025-10-11 04:49:46,476 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-10-11 06:50:11 (12580): Guest Log: 2025-10-11 04:49:46,477 | INFO     | [monitor] control thread has ended
2025-10-11 06:50:11 (12580): Guest Log: 2025-10-11 04:49:51,279 | INFO     | all workflow threads have been joined
2025-10-11 06:50:11 (12580): Guest Log: 2025-10-11 04:49:51,279 | INFO     | end of generic workflow (traces error code: 0)
2025-10-11 06:50:11 (12580): Guest Log: 2025-10-11 04:49:51,279 | INFO     | traces error code: 0
2025-10-11 06:50:11 (12580): Guest Log: 2025-10-11 04:49:51,279 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-10-11 06:50:11 (12580): Guest Log: 2025-10-11 04:49:51,390 [wrapper] ==== pilot stdout END ====
2025-10-11 06:50:11 (12580): Guest Log: 2025-10-11 04:49:51,395 [wrapper] ==== wrapper stdout RESUME ====
2025-10-11 06:50:11 (12580): Guest Log: 2025-10-11 04:49:51,400 [wrapper] pilotpid: 5970
2025-10-11 06:50:11 (12580): Guest Log: 2025-10-11 04:49:51,406 [wrapper] Pilot exit status: 0
2025-10-11 06:50:11 (12580): Guest Log: 2025-10-11 04:49:51,464 [wrapper] pandaids: 6837331667
2025-10-11 06:50:11 (12580): Guest Log: 2025-10-11 04:49:51,503 [wrapper] cleanup supervisor_pilot 18012 5971
2025-10-11 06:50:11 (12580): Guest Log: 2025-10-11 04:49:51,509 [wrapper] Test setup, not cleaning
2025-10-11 06:50:11 (12580): Guest Log: 2025-10-11 04:49:51,515 [wrapper] apfmon messages muted
2025-10-11 06:50:11 (12580): Guest Log: 2025-10-11 04:49:51,520 [wrapper] ==== wrapper stdout END ====
2025-10-11 06:50:11 (12580): Guest Log: 2025-10-11 04:49:51,527 [wrapper] ==== wrapper stderr END ====
2025-10-11 06:50:11 (12580): Guest Log:  *** Error codes and diagnostics ***
2025-10-11 06:50:11 (12580): Guest Log:     "exeErrorCode": 0,
2025-10-11 06:50:11 (12580): Guest Log:     "exeErrorDiag": "",
2025-10-11 06:50:11 (12580): Guest Log:     "pilotErrorCode": 0,
2025-10-11 06:50:11 (12580): Guest Log:     "pilotErrorDiag": "",
2025-10-11 06:50:11 (12580): Guest Log:  *** Listing of results directory ***
2025-10-11 06:50:11 (12580): Guest Log: total 206236
2025-10-11 06:50:11 (12580): Guest Log: -rw-r--r--. 1 atlas atlas      5112 Oct  9 10:51 queuedata.json
2025-10-11 06:50:11 (12580): Guest Log: -rw-r--r--. 1 atlas atlas    557409 Oct  9 10:52 pilot3.tar.gz
2025-10-11 06:50:11 (12580): Guest Log: -rwx------. 1 atlas atlas     36292 Oct  9 10:55 runpilot2-wrapper.sh
2025-10-11 06:50:11 (12580): Guest Log: -rwxr-xr-x. 1 atlas atlas      9106 Oct 10 18:28 init_data.xml
2025-10-11 06:50:11 (12580): Guest Log: -rwxr-xr-x. 1 atlas atlas    569683 Oct 10 18:28 input.tar.gz
2025-10-11 06:50:11 (12580): Guest Log: -rwxr-xr-x. 1 atlas atlas     15120 Oct 10 18:28 start_atlas.sh
2025-10-11 06:50:11 (12580): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Oct 10 18:28 EVNT.46676267._000615.pool.root.1 -> /data/./ATLAS.root_0
2025-10-11 06:50:11 (12580): Guest Log: -rw-r--r--. 1 atlas atlas      2549 Oct 10 18:29 pandaJob.out
2025-10-11 06:50:11 (12580): Guest Log: -rw-------. 1 atlas atlas    975525 Oct 10 18:30 agis_schedconf.cvmfs.json
2025-10-11 06:50:11 (12580): Guest Log: drwx------. 5 atlas atlas      4096 Oct 10 18:30 pilot3
2025-10-11 06:50:11 (12580): Guest Log: -rw-------. 1 atlas atlas 195922645 Oct 11 04:48 HITS.46676269._014983.pool.root.1
2025-10-11 06:50:11 (12580): Guest Log: -rw-------. 1 atlas atlas      1040 Oct 11 04:48 memory_monitor_summary.json
2025-10-11 06:50:11 (12580): Guest Log: -rw-------. 1 atlas atlas   1560580 Oct 11 04:48 agis_ddmendpoints.agis.ALL.json
2025-10-11 06:50:11 (12580): Guest Log: -rw-------. 1 atlas atlas    670229 Oct 11 04:48 log.46676269._014983.job.log.tgz.1
2025-10-11 06:50:11 (12580): Guest Log: -rw-------. 1 atlas atlas        95 Oct 11 04:48 pilot_heartbeat.json
2025-10-11 06:50:11 (12580): Guest Log: -rw-------. 1 atlas atlas      7815 Oct 11 04:48 heartbeat.json
2025-10-11 06:50:11 (12580): Guest Log: -rw-------. 1 atlas atlas      4805 Oct 11 04:49 pilotlog.txt
2025-10-11 06:50:11 (12580): Guest Log: -rw-------. 1 atlas atlas   5042474 Oct 11 04:49 log.46676269._014983.job.log.1
2025-10-11 06:50:11 (12580): Guest Log: -rw-------. 1 atlas atlas       357 Oct 11 04:49 output.list
2025-10-11 06:50:11 (12580): Guest Log: -rw-r--r--. 1 atlas atlas       620 Oct 11 04:49 runtime_log
2025-10-11 06:50:11 (12580): Guest Log: -rw-------. 1 atlas atlas   5734400 Oct 11 04:49 result.tar.gz
2025-10-11 06:50:11 (12580): Guest Log: -rw-r--r--. 1 atlas atlas      8646 Oct 11 04:49 runtime_log.err
2025-10-11 06:50:11 (12580): Guest Log: -rw-------. 1 atlas atlas       661 Oct 11 04:49 cjaNDmcU3Q8n9Rq4apOajLDm4fhM0noT9bVof3QYDmrgNMDm1TwaNn.diag
2025-10-11 06:50:11 (12580): Guest Log: Looking for outputfile HITS.46676269._014983.pool.root.1
2025-10-11 06:50:11 (12580): Guest Log: HITS file was successfully produced
2025-10-11 06:50:11 (12580): Guest Log: -rw-------. 1 atlas atlas 195922645 Oct 11 04:48 /home/atlas/RunAtlas/HITS.46676269._014983.pool.root.1
2025-10-11 06:50:12 (12580): Guest Log: Successfully finished the ATLAS job!
2025-10-11 06:50:12 (12580): Guest Log: Copying the results back to the shared directory!
2025-10-11 06:50:13 (12580): Guest Log:  *** Contents of shared directory: ***
2025-10-11 06:50:13 (12580): Guest Log: total 414584
2025-10-11 06:50:13 (12580): Guest Log: -rwxrwxrwx. 1 root root 222272063 Oct 10 18:28 ATLAS.root_0
2025-10-11 06:50:13 (12580): Guest Log: -rwxrwxrwx. 1 root root 195922645 Oct 11  2025 HITS.pool.root.1
2025-10-11 06:50:13 (12580): Guest Log: -rwxrwxrwx. 1 root root      9106 Oct 10 18:28 init_data.xml
2025-10-11 06:50:13 (12580): Guest Log: -rwxrwxrwx. 1 root root    569683 Oct  9 12:04 input.tar.gz
2025-10-11 06:50:13 (12580): Guest Log: -rwxrwxrwx. 1 root root   5734400 Oct 11  2025 result.tar.gz
2025-10-11 06:50:13 (12580): Guest Log: -rwxrwxrwx. 1 root root     15120 Oct  9 12:04 start_atlas.sh
2025-10-11 06:50:13 (12580): Guest Log:  *** Success! Shutting down the machine. ***
2025-10-11 06:50:13 (12580): VM Completion File Detected.
2025-10-11 06:50:13 (12580): Powering off VM.
2025-10-11 06:50:14 (12580): Successfully stopped VM.
2025-10-11 06:50:14 (12580): Deregistering VM. (boinc_6f88eafde99e5530, slot#0)
2025-10-11 06:50:15 (12580): Removing network bandwidth throttle group from VM.
2025-10-11 06:50:15 (12580): Removing VM from VirtualBox.
2025-10-11 06:50:20 (12580): called boinc_finish(0)

</stderr_txt>
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