Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
09:12:13 (2724098): wrapper (7.7.26015): starting
09:12:13 (2724098): wrapper: running run_atlas (--nthreads 8)
[2025-10-09 09:12:13] Arguments: --nthreads 8
[2025-10-09 09:12:13] Threads: 8
[2025-10-09 09:12:13] Checking for CVMFS
[2025-10-09 09:12:14] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-09 09:12:15] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-09 09:12:15] Running cvmfs_config stat atlas.cern.ch
[2025-10-09 09:12:16] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-09 09:12:16] 2.13.2.0 239285 124986 256212 151512 1 229 29509458 32935937 21557 16776704 0 79274048 99.653 75956296 30556 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-10-09 09:12:16] CVMFS is ok
[2025-10-09 09:12:16] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-09 09:12:16] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-09 09:12:16] Further information can be found at the LHC@home message board.
[2025-10-09 09:12:16] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-09 09:12:16] Checking for apptainer binary...
[2025-10-09 09:12:16] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-09 09:12:16] Running /usr/bin/apptainer --version
[2025-10-09 09:12:17] apptainer version 1.4.3-1.el9
[2025-10-09 09:12:17] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-09 09:12:18] c-6-6.aglt2.org
[2025-10-09 09:12:18] apptainer works
[2025-10-09 09:12:18] Set ATHENA_PROC_NUMBER=8
[2025-10-09 09:12:18] Set ATHENA_CORE_NUMBER=8
[2025-10-09 09:12:18] Starting ATLAS job with PandaID=6837331540
[2025-10-09 09:12:18] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
17:28:06 (255223): wrapper (7.7.26015): starting
17:28:06 (255223): wrapper: running run_atlas (--nthreads 8)
[2025-10-09 17:28:06] Arguments: --nthreads 8
[2025-10-09 17:28:06] Threads: 8
[2025-10-09 17:28:06] This job has been restarted, cleaning up previous attempt
[2025-10-09 17:28:06] Checking for CVMFS
[2025-10-09 17:28:06] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-09 17:28:06] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-09 17:28:06] Running cvmfs_config stat atlas.cern.ch
[2025-10-09 17:28:06] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-09 17:28:06] 2.13.2.0 239285 125482 256180 151524 2 21 32889289 32935937 20502 16776704 0 81310016 99.657 77059509 30530 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-10-09 17:28:06] CVMFS is ok
[2025-10-09 17:28:06] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-09 17:28:06] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-09 17:28:06] Further information can be found at the LHC@home message board.
[2025-10-09 17:28:06] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-09 17:28:06] Checking for apptainer binary...
[2025-10-09 17:28:06] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-09 17:28:06] Running /usr/bin/apptainer --version
[2025-10-09 17:28:06] apptainer version 1.4.3-1.el9
[2025-10-09 17:28:06] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-09 17:28:07] c-6-6.aglt2.org
[2025-10-09 17:28:07] apptainer works
[2025-10-09 17:28:07] Set ATHENA_PROC_NUMBER=8
[2025-10-09 17:28:07] Set ATHENA_CORE_NUMBER=8
[2025-10-09 17:28:07] Starting ATLAS job with PandaID=6837331540
[2025-10-09 17:28:07] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-10 04:39:52]  *** The last 200 lines of the pilot log: ***
[2025-10-10 04:39:52] 2025-10-10 08:39:04,173 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-10 04:39:52] 2025-10-10 08:39:04,297 | INFO     | fitting pss+swap vs Time
[2025-10-10 04:39:52] 2025-10-10 08:39:04,298 | INFO     | sum of square deviations: 88340611299.05304
[2025-10-10 04:39:52] 2025-10-10 08:39:04,549 | INFO     | sum of deviations: -297294128665.5745
[2025-10-10 04:39:52] 2025-10-10 08:39:04,549 | INFO     | mean x: 1760065395.606383
[2025-10-10 04:39:52] 2025-10-10 08:39:04,549 | INFO     | mean y: 2107065.422492401
[2025-10-10 04:39:52] 2025-10-10 08:39:04,549 | INFO     | -- intersect: 5925284418.247063
[2025-10-10 04:39:52] 2025-10-10 08:39:04,549 | INFO     | intersect: 5925284418.247063
[2025-10-10 04:39:52] 2025-10-10 08:39:04,550 | INFO     | chi2: 5.1815504648913135
[2025-10-10 04:39:52] 2025-10-10 08:39:04,567 | INFO     | sum of square deviations: 86342234793.61311
[2025-10-10 04:39:52] 2025-10-10 08:39:04,606 | INFO     | monitor loop #2105: job 0:6837331540 is in state 'finished'
[2025-10-10 04:39:52] 2025-10-10 08:39:04,606 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-10 04:39:52] 2025-10-10 08:39:04,608 | INFO     | sum of deviations: -153032385018.5161
[2025-10-10 04:39:52] 2025-10-10 08:39:04,608 | INFO     | mean x: 1760065243.1133232
[2025-10-10 04:39:52] 2025-10-10 08:39:04,608 | INFO     | mean y: 2118059.58805513
[2025-10-10 04:39:52] 2025-10-10 08:39:04,608 | INFO     | -- intersect: 3121645630.140935
[2025-10-10 04:39:52] 2025-10-10 08:39:04,621 | INFO     | intersect: 3121645630.140935
[2025-10-10 04:39:52] 2025-10-10 08:39:04,622 | INFO     | chi2: 2.33205357150655
[2025-10-10 04:39:52] 2025-10-10 08:39:04,622 | INFO     | current chi2=2.33205357150655 (change=54.99313212699809 %)
[2025-10-10 04:39:52] 2025-10-10 08:39:04,623 | INFO     | sum of square deviations: 84374031905.776
[2025-10-10 04:39:52] 2025-10-10 08:39:04,666 | INFO     | sum of deviations: -142044261671.72684
[2025-10-10 04:39:52] 2025-10-10 08:39:04,667 | INFO     | mean x: 1760065090.6126542
[2025-10-10 04:39:52] 2025-10-10 08:39:04,667 | INFO     | mean y: 2118910.8935185187
[2025-10-10 04:39:52] 2025-10-10 08:39:04,667 | INFO     | -- intersect: 2965200568.167511
[2025-10-10 04:39:52] 2025-10-10 08:39:04,667 | INFO     | intersect: 2965200568.167511
[2025-10-10 04:39:52] 2025-10-10 08:39:04,668 | INFO     | chi2: 2.32374390402174
[2025-10-10 04:39:52] 2025-10-10 08:39:04,668 | INFO     | current chi2=2.32374390402174 (change=0.3563240393076206 %)
[2025-10-10 04:39:52] 2025-10-10 08:39:04,668 | INFO     | right removable region: 647
[2025-10-10 04:39:52] 2025-10-10 08:39:04,669 | INFO     | sum of square deviations: 86341830850.3859
[2025-10-10 04:39:52] 2025-10-10 08:39:04,723 | INFO     | sum of deviations: -398852644832.643
[2025-10-10 04:39:52] 2025-10-10 08:39:04,723 | INFO     | mean x: 1760065548.1148546
[2025-10-10 04:39:52] 2025-10-10 08:39:04,724 | INFO     | mean y: 2114796.808575804
[2025-10-10 04:39:52] 2025-10-10 08:39:04,724 | INFO     | -- intersect: 8132667415.745629
[2025-10-10 04:39:52] 2025-10-10 08:39:04,724 | INFO     | intersect: 8132667415.745629
[2025-10-10 04:39:52] 2025-10-10 08:39:04,725 | INFO     | chi2: 3.579705846766566
[2025-10-10 04:39:52] 2025-10-10 08:39:04,725 | INFO     | current chi2=3.579705846766566 (change=30.91438805775189 %)
[2025-10-10 04:39:52] 2025-10-10 08:39:04,726 | INFO     | sum of square deviations: 84373423064.12357
[2025-10-10 04:39:52] 2025-10-10 08:39:04,774 | INFO     | sum of deviations: -404792764449.19116
[2025-10-10 04:39:52] 2025-10-10 08:39:04,775 | INFO     | mean x: 1760065700.6234567
[2025-10-10 04:39:52] 2025-10-10 08:39:04,775 | INFO     | mean y: 2115252.6836419753
[2025-10-10 04:39:52] 2025-10-10 08:39:04,775 | INFO     | -- intersect: 8446265492.103258
[2025-10-10 04:39:52] 2025-10-10 08:39:04,775 | INFO     | intersect: 8446265492.103258
[2025-10-10 04:39:52] 2025-10-10 08:39:04,790 | INFO     | chi2: 3.539069043972522
[2025-10-10 04:39:52] 2025-10-10 08:39:04,790 | INFO     | current chi2=3.539069043972522 (change=1.1351994977673858 %)
[2025-10-10 04:39:52] 2025-10-10 08:39:04,790 | INFO     | left removable region: 20
[2025-10-10 04:39:52] 2025-10-10 08:39:04,791 | INFO     | sum of square deviations: 76433625713.27602
[2025-10-10 04:39:52] 2025-10-10 08:39:04,839 | INFO     | sum of deviations: -215084275466.3701
[2025-10-10 04:39:52] 2025-10-10 08:39:04,839 | INFO     | mean x: 1760065670.1307814
[2025-10-10 04:39:52] 2025-10-10 08:39:04,839 | INFO     | mean y: 2125491.1020733654
[2025-10-10 04:39:52] 2025-10-10 08:39:04,839 | INFO     | -- intersect: 4954951500.604806
[2025-10-10 04:39:52] 2025-10-10 08:39:04,851 | INFO     | intersect: 4954951500.604806
[2025-10-10 04:39:52] 2025-10-10 08:39:04,852 | INFO     | chi2: 0.621869583674033
[2025-10-10 04:39:52] 2025-10-10 08:39:04,852 | INFO     | -- intersect: 4954951500.604806
[2025-10-10 04:39:52] 2025-10-10 08:39:04,852 | INFO     | current memory leak: -2.81 B/s (using 627 data points, chi2=0.62)
[2025-10-10 04:39:52] 2025-10-10 08:39:04,853 | INFO     | could have reported an average CPU frequency of 2600 MHz (25 samples)
[2025-10-10 04:39:52] 2025-10-10 08:39:04,853 | INFO     | ..............................
[2025-10-10 04:39:52] 2025-10-10 08:39:04,853 | INFO     | . Timing measurements:
[2025-10-10 04:39:52] 2025-10-10 08:39:04,853 | INFO     | . get job = 0 s
[2025-10-10 04:39:52] 2025-10-10 08:39:04,854 | INFO     | . initial setup = 2 s
[2025-10-10 04:39:52] 2025-10-10 08:39:04,854 | INFO     | . payload setup = 11 s
[2025-10-10 04:39:52] 2025-10-10 08:39:04,854 | INFO     | . stage-in = 0 s
[2025-10-10 04:39:52] 2025-10-10 08:39:04,854 | INFO     | . payload execution = 40128 s
[2025-10-10 04:39:52] 2025-10-10 08:39:04,854 | INFO     | . stage-out = 8 s
[2025-10-10 04:39:52] 2025-10-10 08:39:04,854 | INFO     | . log creation = 3 s
[2025-10-10 04:39:52] 2025-10-10 08:39:04,854 | INFO     | ..............................
[2025-10-10 04:39:52] 2025-10-10 08:39:05,337 | INFO     | 
[2025-10-10 04:39:52] 2025-10-10 08:39:05,338 | INFO     | job summary report
[2025-10-10 04:39:52] 2025-10-10 08:39:05,338 | INFO     | --------------------------------------------------
[2025-10-10 04:39:52] 2025-10-10 08:39:05,338 | INFO     | PanDA job id: 6837331540
[2025-10-10 04:39:52] 2025-10-10 08:39:05,338 | INFO     | task id: 46676269
[2025-10-10 04:39:52] 2025-10-10 08:39:05,338 | INFO     | errors: (none)
[2025-10-10 04:39:52] 2025-10-10 08:39:05,338 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-10 04:39:52] 2025-10-10 08:39:05,338 | INFO     | pilot state: finished 
[2025-10-10 04:39:52] 2025-10-10 08:39:05,338 | INFO     | transexitcode: 0
[2025-10-10 04:39:52] 2025-10-10 08:39:05,339 | INFO     | exeerrorcode: 0
[2025-10-10 04:39:52] 2025-10-10 08:39:05,339 | INFO     | exeerrordiag: 
[2025-10-10 04:39:52] 2025-10-10 08:39:05,339 | INFO     | exitcode: 0
[2025-10-10 04:39:52] 2025-10-10 08:39:05,339 | INFO     | exitmsg: OK
[2025-10-10 04:39:52] 2025-10-10 08:39:05,339 | INFO     | cpuconsumptiontime: 49568 s
[2025-10-10 04:39:52] 2025-10-10 08:39:05,339 | INFO     | nevents: 400
[2025-10-10 04:39:52] 2025-10-10 08:39:05,339 | INFO     | neventsw: 0
[2025-10-10 04:39:52] 2025-10-10 08:39:05,339 | INFO     | pid: 277454
[2025-10-10 04:39:52] 2025-10-10 08:39:05,339 | INFO     | pgrp: 277454
[2025-10-10 04:39:52] 2025-10-10 08:39:05,339 | INFO     | corecount: 8
[2025-10-10 04:39:52] 2025-10-10 08:39:05,339 | INFO     | event service: False
[2025-10-10 04:39:52] 2025-10-10 08:39:05,438 | INFO     | sizes: {0: 2348856, 1: 2348884, 10: 2349146, 11: 2349174, 40145: 2391353, 40155: 2400351, 40156: 2400535, 40216: 2400793}
[2025-10-10 04:39:52] 2025-10-10 08:39:05,438 | INFO     | --------------------------------------------------
[2025-10-10 04:39:52] 2025-10-10 08:39:05,438 | INFO     | 
[2025-10-10 04:39:52] 2025-10-10 08:39:05,438 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-10-10 04:39:52] 2025-10-10 08:39:05,753 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-10 04:39:52] 2025-10-10 08:39:05,753 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-10 04:39:52] 2025-10-10 08:39:05,753 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-10 04:39:52] 2025-10-10 08:39:05,753 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-10 04:39:52] 2025-10-10 08:39:05,753 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-10 04:39:52] 2025-10-10 08:39:05,753 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-10 04:39:52] 2025-10-10 08:39:05,753 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-10 04:39:52] 2025-10-10 08:39:05,754 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-10 04:39:52] 2025-10-10 08:39:05,754 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-10 04:39:52] 2025-10-10 08:39:05,754 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-10 04:39:52] 2025-10-10 08:39:05,754 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-10 04:39:52] 2025-10-10 08:39:05,754 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-10 04:39:52] 2025-10-10 08:39:05,754 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-10 04:39:52] 2025-10-10 08:39:05,754 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-10 04:39:52] 2025-10-10 08:39:05,754 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-10 04:39:52] 2025-10-10 08:39:05,754 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-10 04:39:52] 2025-10-10 08:39:05,755 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-10 04:39:52] 2025-10-10 08:39:05,755 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-10 04:39:52] 2025-10-10 08:39:05,755 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-10 04:39:52] 2025-10-10 08:39:05,755 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-10 04:39:52] 2025-10-10 08:39:05,755 | INFO     | job 6837331540 has completed (purged errors)
[2025-10-10 04:39:52] 2025-10-10 08:39:05,755 | INFO     | overall cleanup function is called
[2025-10-10 04:39:52] 2025-10-10 08:39:06,769 | INFO     | --- collectZombieJob: --- 10, [277454]
[2025-10-10 04:39:52] 2025-10-10 08:39:06,770 | INFO     | zombie collector waiting for pid 277454
[2025-10-10 04:39:52] 2025-10-10 08:39:06,770 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-10 04:39:52] 2025-10-10 08:39:06,770 | INFO     | collected zombie processes
[2025-10-10 04:39:52] 2025-10-10 08:39:06,770 | INFO     | will attempt to kill all subprocesses of pid=277454
[2025-10-10 04:39:52] 2025-10-10 08:39:10,012 | INFO     | process IDs to be killed: [277454] (in reverse order)
[2025-10-10 04:39:52] 2025-10-10 08:39:10,352 | WARNING  | found no corresponding commands to process id(s)
[2025-10-10 04:39:52] 2025-10-10 08:39:10,353 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-10 04:39:52] 2025-10-10 08:39:10,436 | INFO     | did not find any defunct processes belonging to 277454
[2025-10-10 04:39:52] 2025-10-10 08:39:10,451 | INFO     | did not find any defunct processes belonging to 277454
[2025-10-10 04:39:52] 2025-10-10 08:39:10,452 | INFO     | ready for new job
[2025-10-10 04:39:52] 2025-10-10 08:39:10,452 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-10 04:39:52] 2025-10-10 08:39:10,455 | INFO     | ***************************************
[2025-10-10 04:39:52] 2025-10-10 08:39:10,455 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-10 04:39:52] 2025-10-10 08:39:10,456 | INFO     | ***************************************
[2025-10-10 04:39:52] 2025-10-10 08:39:10,456 | INFO     | 
[2025-10-10 04:39:52] 2025-10-10 08:39:10,471 | INFO     | architecture information:
[2025-10-10 04:39:52] 2025-10-10 08:39:10,478 | INFO     | executing command: cat /etc/os-release
[2025-10-10 04:39:52] 2025-10-10 08:39:10,541 | INFO     | cat /etc/os-release:
[2025-10-10 04:39:52] NAME="CentOS Linux"
[2025-10-10 04:39:52] VERSION="7 (Core)"
[2025-10-10 04:39:52] ID="centos"
[2025-10-10 04:39:52] ID_LIKE="rhel fedora"
[2025-10-10 04:39:52] VERSION_ID="7"
[2025-10-10 04:39:52] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-10 04:39:52] ANSI_COLOR="0;31"
[2025-10-10 04:39:52] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-10 04:39:52] HOME_URL="https://www.centos.org/"
[2025-10-10 04:39:52] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-10 04:39:52] 
[2025-10-10 04:39:52] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-10 04:39:52] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-10 04:39:52] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-10 04:39:52] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-10 04:39:52] 
[2025-10-10 04:39:52] 2025-10-10 08:39:10,543 | INFO     | ***************************************
[2025-10-10 04:39:52] 2025-10-10 08:39:11,047 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-10-10 04:39:52] 2025-10-10 08:39:11,140 | INFO     | sufficient remaining disk space (74585210880 B)
[2025-10-10 04:39:52] 2025-10-10 08:39:11,140 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-10 04:39:52] 2025-10-10 08:39:11,141 | INFO     | current server update state: UPDATING_FINAL
[2025-10-10 04:39:52] 2025-10-10 08:39:11,141 | INFO     | update_server=False
[2025-10-10 04:39:52] 2025-10-10 08:39:11,141 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-10 04:39:52] 2025-10-10 08:39:11,141 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-10 04:39:52] 2025-10-10 08:39:11,142 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-10 04:39:52] 2025-10-10 08:39:11,142 | INFO     | aborting loop
[2025-10-10 04:39:52] 2025-10-10 08:39:11,142 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-10 04:39:52] 2025-10-10 08:39:11,169 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-10 04:39:52] 2025-10-10 08:39:11,722 | INFO     | all job control threads have been joined
[2025-10-10 04:39:52] 2025-10-10 08:39:11,785 | INFO     | all data control threads have been joined
[2025-10-10 04:39:52] 2025-10-10 08:39:12,147 | INFO     | [job] retrieve thread has finished
[2025-10-10 04:39:52] 2025-10-10 08:39:12,178 | INFO     | [job] queue monitor thread has finished
[2025-10-10 04:39:52] 2025-10-10 08:39:12,202 | INFO     | [job] job monitor thread has finished
[2025-10-10 04:39:52] 2025-10-10 08:39:12,235 | INFO     | all payload control threads have been joined
[2025-10-10 04:39:52] 2025-10-10 08:39:12,487 | INFO     | [payload] validate_pre thread has finished
[2025-10-10 04:39:52] 2025-10-10 08:39:12,524 | INFO     | [data] copytool_in thread has finished
[2025-10-10 04:39:52] 2025-10-10 08:39:12,728 | INFO     | [job] control thread has finished
[2025-10-10 04:39:52] 2025-10-10 08:39:12,790 | INFO     | [data] control thread has finished
[2025-10-10 04:39:52] 2025-10-10 08:39:12,834 | INFO     | [payload] validate_post thread has finished
[2025-10-10 04:39:52] 2025-10-10 08:39:12,963 | INFO     | [payload] failed_post thread has finished
[2025-10-10 04:39:52] 2025-10-10 08:39:13,199 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-10 04:39:52] 2025-10-10 08:39:13,205 | INFO     | [data] copytool_out thread has finished
[2025-10-10 04:39:52] 2025-10-10 08:39:13,241 | INFO     | [payload] control thread has finished
[2025-10-10 04:39:52] 2025-10-10 08:39:13,485 | INFO     | [job] validate thread has finished
[2025-10-10 04:39:52] 2025-10-10 08:39:13,499 | INFO     | [job] create_data_payload thread has finished
[2025-10-10 04:39:52] 2025-10-10 08:39:13,597 | INFO     | [payload] execute_payloads thread has finished
[2025-10-10 04:39:52] 2025-10-10 08:39:15,210 | INFO     | [data] queue_monitor thread has finished
[2025-10-10 04:39:52] 2025-10-10 08:39:37,891 | INFO     | PID=263688 has CPU usage=3.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-10-10 04:39:52] 2025-10-10 08:39:37,892 | INFO     | .. there are 43 such processes running
[2025-10-10 04:39:52] 2025-10-10 08:39:37,893 | INFO     | found 0 job(s) in 20 queues
[2025-10-10 04:39:52] 2025-10-10 08:39:37,893 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-10 04:39:52] 2025-10-10 08:39:37,893 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-10 04:39:52] 2025-10-10 08:39:44,343 | INFO     | [monitor] cgroup control has ended
[2025-10-10 04:39:52] 2025-10-10 08:39:44,663 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140274262685504)>', '<ExcThread(monitor, started 140273455703808)>']
[2025-10-10 04:39:52] 2025-10-10 08:39:44,958 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-10 04:39:52] 2025-10-10 08:39:44,958 | INFO     | [monitor] control thread has ended
[2025-10-10 04:39:52] 2025-10-10 08:39:49,688 | INFO     | all workflow threads have been joined
[2025-10-10 04:39:52] 2025-10-10 08:39:49,689 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-10 04:39:52] 2025-10-10 08:39:49,689 | INFO     | traces error code: 0
[2025-10-10 04:39:52] 2025-10-10 08:39:49,690 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-10 04:39:52] 2025-10-10 08:39:50,178 [wrapper] ==== pilot stdout END ====
[2025-10-10 04:39:52] 2025-10-10 08:39:50,231 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-10 04:39:52] 2025-10-10 08:39:50,288 [wrapper] pilotpid: 263688
[2025-10-10 04:39:52] 2025-10-10 08:39:50,316 [wrapper] Pilot exit status: 0
[2025-10-10 04:39:52] 2025-10-10 08:39:50,471 [wrapper] pandaids: 6837331540 6837331540
[2025-10-10 04:39:52] 2025-10-10 08:39:50,768 [wrapper] cleanup supervisor_pilot 2576305 263689
[2025-10-10 04:39:52] 2025-10-10 08:39:50,834 [wrapper] Test setup, not cleaning
[2025-10-10 04:39:52] 2025-10-10 08:39:50,902 [wrapper] apfmon messages muted
[2025-10-10 04:39:52] 2025-10-10 08:39:50,958 [wrapper] ==== wrapper stdout END ====
[2025-10-10 04:39:52] 2025-10-10 08:39:51,059 [wrapper] ==== wrapper stderr END ====
[2025-10-10 04:39:52]  *** Error codes and diagnostics ***
[2025-10-10 04:39:52]     "exeErrorCode": 0,
[2025-10-10 04:39:52]     "exeErrorDiag": "",
[2025-10-10 04:39:52]     "pilotErrorCode": 0,
[2025-10-10 04:39:52]     "pilotErrorDiag": "",
[2025-10-10 04:39:52]  *** Listing of results directory ***
[2025-10-10 04:39:52] total 632872
[2025-10-10 04:39:52] drwx------. 5 boincer umatlas      4096 Oct  7 03:00 pilot3
[2025-10-10 04:39:52] -rw-r--r--. 1 boincer umatlas      5112 Oct  9 06:51 queuedata.json
[2025-10-10 04:39:52] -rw-r--r--. 1 boincer umatlas    557409 Oct  9 06:52 pilot3.tar.gz
[2025-10-10 04:39:52] -rwx------. 1 boincer umatlas     36292 Oct  9 06:55 runpilot2-wrapper.sh
[2025-10-10 04:39:52] -rw-r--r--. 1 boincer umatlas       100 Oct  9 09:12 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-10 04:39:52] -rwxr-xr-x. 1 boincer umatlas      7986 Oct  9 09:12 run_atlas
[2025-10-10 04:39:52] -rw-r--r--. 1 boincer umatlas       105 Oct  9 09:12 job.xml
[2025-10-10 04:39:52] -rw-r--r--. 3 boincer umatlas 221349022 Oct  9 09:12 EVNT.46676267._000609.pool.root.1
[2025-10-10 04:39:52] -rw-r--r--. 3 boincer umatlas 221349022 Oct  9 09:12 ATLAS.root_0
[2025-10-10 04:39:52] -rw-r--r--. 2 boincer umatlas     15120 Oct  9 09:12 start_atlas.sh
[2025-10-10 04:39:52] drwxrwx--x. 2 boincer umatlas      4096 Oct  9 09:12 shared
[2025-10-10 04:39:52] -rw-r--r--. 2 boincer umatlas    569678 Oct  9 09:12 input.tar.gz
[2025-10-10 04:39:52] -rw-r--r--. 1 boincer umatlas         0 Oct  9 09:12 boinc_lockfile
[2025-10-10 04:39:52] -rw-r--r--. 1 boincer umatlas      2550 Oct  9 17:28 pandaJob.out
[2025-10-10 04:39:52] -rw-------. 1 boincer umatlas    975454 Oct  9 17:28 agis_schedconf.cvmfs.json
[2025-10-10 04:39:52] -rw-------. 1 boincer umatlas 190780614 Oct 10 04:33 HITS.46676269._014856.pool.root.1
[2025-10-10 04:39:52] -rw-r--r--. 1 boincer umatlas       531 Oct 10 04:33 boinc_task_state.xml
[2025-10-10 04:39:52] -rw-------. 1 boincer umatlas      1055 Oct 10 04:37 memory_monitor_summary.json
[2025-10-10 04:39:52] -rw-------. 1 boincer umatlas   1560580 Oct 10 04:37 agis_ddmendpoints.agis.ALL.json
[2025-10-10 04:39:52] -rw-------. 1 boincer umatlas    753526 Oct 10 04:38 log.46676269._014856.job.log.tgz.1
[2025-10-10 04:39:52] -rw-r--r--. 1 boincer umatlas      6658 Oct 10 04:38 init_data.xml
[2025-10-10 04:39:52] -rw-------. 1 boincer umatlas      7855 Oct 10 04:39 heartbeat.json
[2025-10-10 04:39:52] -rw-------. 1 boincer umatlas        96 Oct 10 04:39 pilot_heartbeat.json
[2025-10-10 04:39:52] -rw-------. 1 boincer umatlas      4823 Oct 10 04:39 pilotlog.txt
[2025-10-10 04:39:52] -rw-r--r--. 1 boincer umatlas      8192 Oct 10 04:39 boinc_mmap_file
[2025-10-10 04:39:52] -rw-------. 1 boincer umatlas   4586883 Oct 10 04:39 log.46676269._014856.job.log.1
[2025-10-10 04:39:52] -rw-------. 1 boincer umatlas       357 Oct 10 04:39 output.list
[2025-10-10 04:39:52] -rw-r--r--. 1 boincer umatlas        28 Oct 10 04:39 wrapper_checkpoint.txt
[2025-10-10 04:39:52] -rw-r--r--. 1 boincer umatlas       620 Oct 10 04:39 runtime_log
[2025-10-10 04:39:52] -rw-------. 1 boincer umatlas   5355520 Oct 10 04:39 result.tar.gz
[2025-10-10 04:39:52] -rw-r--r--. 1 boincer umatlas      8774 Oct 10 04:39 runtime_log.err
[2025-10-10 04:39:52] -rw-------. 1 boincer umatlas       785 Oct 10 04:39 qRVLDmsT3Q8n9Rq4apOajLDm4fhM0noT9bVof3QYDmhdNMDm2yEiXm.diag
[2025-10-10 04:39:52] -rw-r--r--. 1 boincer umatlas     23166 Oct 10 04:39 stderr.txt
[2025-10-10 04:39:52] HITS file was successfully produced:
[2025-10-10 04:39:52] -rw-------. 1 boincer umatlas 190780614 Oct 10 04:33 shared/HITS.pool.root.1
[2025-10-10 04:39:52]  *** Contents of shared directory: ***
[2025-10-10 04:39:52] total 408288
[2025-10-10 04:39:52] -rw-r--r--. 3 boincer umatlas 221349022 Oct  9 09:12 ATLAS.root_0
[2025-10-10 04:39:52] -rw-r--r--. 2 boincer umatlas     15120 Oct  9 09:12 start_atlas.sh
[2025-10-10 04:39:52] -rw-r--r--. 2 boincer umatlas    569678 Oct  9 09:12 input.tar.gz
[2025-10-10 04:39:52] -rw-------. 1 boincer umatlas 190780614 Oct 10 04:33 HITS.pool.root.1
[2025-10-10 04:39:52] -rw-------. 1 boincer umatlas   5355520 Oct 10 04:39 result.tar.gz
04:39:53 (255223): run_atlas exited; CPU time 51146.442136
04:39:53 (255223): called boinc_finish(0)

</stderr_txt>
]]>

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