Stderr output

<core_client_version>8.0.2</core_client_version>
<![CDATA[
<stderr_txt>
2025-10-11 06:50:41 (13280): vboxwrapper version 26210
2025-10-11 06:50:41 (13280): BOINC client version: 8.0.2
2025-10-11 06:50:42 (13280): Detected: VirtualBox VboxManage Interface (Version: 6.1.18)
2025-10-11 06:50:42 (13280): Successfully copied 'init_data.xml' to the shared directory.
2025-10-11 06:50:43 (13280): Create VM. (boinc_0ad8176942a37e43, slot#0)
2025-10-11 06:50:43 (13280): Setting Memory Size for VM. (5900MB)
2025-10-11 06:50:43 (13280): Setting CPU Count for VM. (2)
2025-10-11 06:50:44 (13280): Setting Chipset Options for VM.
2025-10-11 06:50:44 (13280): Setting Graphics Controller Options for VM. (Driver: VBoxVGA, 16MB)
2025-10-11 06:50:44 (13280): Setting Boot Options for VM.
2025-10-11 06:50:45 (13280): Setting Network Configuration for NAT. (Driver: virtio)
2025-10-11 06:50:45 (13280): Enabling VM Network Access.
2025-10-11 06:50:45 (13280): Disabling USB Support for VM.
2025-10-11 06:50:46 (13280): Disabling COM Port Support for VM.
2025-10-11 06:50:46 (13280): Disabling LPT Port Support for VM.
2025-10-11 06:50:46 (13280): Disabling Audio Support for VM.
2025-10-11 06:50:47 (13280): Disabling Clipboard Support for VM.
2025-10-11 06:50:47 (13280): Disabling Drag and Drop Support for VM.
2025-10-11 06:50:47 (13280): Adding storage controller(s) to VM.
2025-10-11 06:50:47 (13280): Adding virtual disk drive to VM. (ATLAS_vbox_3.03_image.vdi)
2025-10-11 06:50:49 (13280): Adding VirtualBox Guest Additions to VM.
2025-10-11 06:50:49 (13280): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-10-11 06:50:49 (13280): forwarding host port 56773 to guest port 80
2025-10-11 06:50:49 (13280): Enabling remote desktop for VM.
2025-10-11 06:50:50 (13280): Enabling shared directory for VM.
2025-10-11 06:50:51 (13280): Starting VM using VBoxManage interface. (boinc_0ad8176942a37e43, slot#0)
2025-10-11 06:50:59 (13280): Successfully started VM. (PID = '7072')
2025-10-11 06:50:59 (13280): Reporting VM Process ID to BOINC.
2025-10-11 06:50:59 (13280): Guest Log: BIOS: VirtualBox 6.1.18
2025-10-11 06:50:59 (13280): Guest Log: CPUID EDX: 0x178bfbff
2025-10-11 06:50:59 (13280): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-10-11 06:50:59 (13280): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-10-11 06:50:59 (13280): VM state change detected. (old = 'poweredoff', new = 'running')
2025-10-11 06:50:59 (13280): Detected: Web Application Enabled (http://localhost:56773)
2025-10-11 06:50:59 (13280): Detected: Remote Desktop Enabled (localhost:56774)
2025-10-11 06:50:59 (13280): Preference change detected
2025-10-11 06:50:59 (13280): Setting CPU throttle for VM. (100%)
2025-10-11 06:50:59 (13280): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 300 seconds) or (Vbox_job.xml: 900 seconds))
2025-10-11 06:51:01 (13280): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-10-11 06:51:01 (13280): Guest Log: BIOS: Booting from Hard Disk...
2025-10-11 06:51:04 (13280): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-10-11 06:51:04 (13280): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-10-11 06:51:04 (13280): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-10-11 06:51:04 (13280): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-10-11 06:51:04 (13280): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-10-11 06:51:04 (13280): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-10-11 06:51:04 (13280): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-10-11 06:51:04 (13280): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-10-11 06:51:04 (13280): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-10-11 06:51:04 (13280): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-10-11 06:51:04 (13280): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-10-11 06:51:04 (13280): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-10-11 06:51:04 (13280): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-10-11 06:51:04 (13280): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-10-11 06:51:04 (13280): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-10-11 06:51:04 (13280): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-10-11 06:51:04 (13280): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-10-11 06:51:04 (13280): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-10-11 06:51:04 (13280): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-10-11 06:51:04 (13280): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-10-11 06:51:04 (13280): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-10-11 06:51:04 (13280): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-10-11 06:51:04 (13280): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-10-11 06:51:04 (13280): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-10-11 06:51:04 (13280): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-10-11 06:51:04 (13280): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-10-11 06:51:04 (13280): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-10-11 06:51:04 (13280): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-10-11 06:51:04 (13280): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-10-11 06:51:04 (13280): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-10-11 06:51:04 (13280): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-10-11 06:51:04 (13280): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-10-11 06:51:10 (13280): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-10-11 06:51:10 (13280): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0000000 (size 0x400000)
2025-10-11 06:51:24 (13280): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-10-11 06:51:24 (13280): Guest Log: 00:00:00.000185 main     Log opened 2025-10-11T06:51:23.098146000Z
2025-10-11 06:51:24 (13280): Guest Log: 00:00:00.000353 main     OS Product: Linux
2025-10-11 06:51:24 (13280): Guest Log: 00:00:00.000444 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-10-11 06:51:24 (13280): Guest Log: 00:00:00.000490 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-10-11 06:51:24 (13280): Guest Log: 00:00:00.000529 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-10-11 06:51:24 (13280): Guest Log: 00:00:00.000530 main     Process ID: 1323
2025-10-11 06:51:24 (13280): Guest Log: 00:00:00.000531 main     Package type: LINUX_64BITS_GENERIC
2025-10-11 06:51:24 (13280): Guest Log: 00:00:00.001965 main     5.2.32 r132073 started. Verbose level = 0
2025-10-11 06:51:24 (13280): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-10-11 06:51:24 (13280): Guest Log: [INFO] Mounting shared directory
2025-10-11 06:51:24 (13280): Guest Log: [INFO] Checking for init_data.xml
2025-10-11 06:51:29 (13280): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-10-11 06:51:29 (13280): Guest Log: [INFO] Detected branch: prod
2025-10-11 06:51:29 (13280): Guest Log: This is the prod version of the ATLAS job wrapper
2025-10-11 06:51:29 (13280): Guest Log: Copying input files
2025-10-11 06:51:32 (13280): Guest Log: Copied input files into RunAtlas.
2025-10-11 06:51:32 (13280): Guest Log: Detected user-configured HTTP proxy at http://192.168.0.39:3128 - will set in /etc/cvmfs/default.local
2025-10-11 06:51:34 (13280): Guest Log: 00:00:10.006067 timesync vgsvcTimeSyncWorker: Radical guest time change: -7 189 411 414 000ns (GuestNow=1 760 158 293 691 204 000 ns GuestLast=1 760 165 483 102 618 000 ns fSetTimeLastLoop=true )
2025-10-11 06:51:41 (13280): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-10-11 06:51:41 (13280): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-10-11 06:51:41 (13280): Guest Log: 2.6.3.0 1598 0 29572 151572 4 1 3117639 4096000 0 65024 0 0 n/a 0 0 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.0.39:3128 1
2025-10-11 06:51:42 (13280): Guest Log: copied the webapp to /var/www
2025-10-11 06:51:42 (13280): Guest Log: ATHENA_PROC_NUMBER=2
2025-10-11 06:51:42 (13280): Guest Log: ATHENA_CORE_NUMBER=2
2025-10-11 06:51:42 (13280): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-10-11 06:51:42 (13280): Guest Log:  *** Starting ATLAS job. (PandaID=6837329659 taskID=46676269) ***
2025-10-11 08:31:06 (13280): Status Report: Elapsed Time: '6000.000000'
2025-10-11 08:31:06 (13280): Status Report: CPU Time: '11296.140625'
2025-10-11 09:04:09 (13280): VM state change detected. (old = 'running', new = 'paused')
2025-10-11 09:04:29 (13280): VM state change detected. (old = 'paused', new = 'running')
2025-10-11 09:08:19 (13280): VM state change detected. (old = 'running', new = 'paused')
2025-10-11 09:08:39 (13280): VM state change detected. (old = 'paused', new = 'running')
2025-10-11 09:08:52 (13280): VM state change detected. (old = 'running', new = 'paused')
2025-10-11 09:09:11 (13280): VM state change detected. (old = 'paused', new = 'running')
2025-10-11 09:09:20 (13280): VM state change detected. (old = 'running', new = 'paused')
2025-10-11 09:09:40 (13280): VM state change detected. (old = 'paused', new = 'running')
2025-10-11 09:10:09 (13280): VM state change detected. (old = 'running', new = 'paused')
2025-10-11 09:10:29 (13280): VM state change detected. (old = 'paused', new = 'running')
2025-10-11 10:13:07 (13280): Status Report: Elapsed Time: '12000.318127'
2025-10-11 10:13:07 (13280): Status Report: CPU Time: '23239.265625'
2025-10-11 11:53:21 (13280): Status Report: Elapsed Time: '18000.794683'
2025-10-11 11:53:21 (13280): Status Report: CPU Time: '35188.046875'
2025-10-11 13:33:35 (13280): Status Report: Elapsed Time: '24000.794683'
2025-10-11 13:33:35 (13280): Status Report: CPU Time: '47134.828125'
2025-10-11 15:13:48 (13280): Status Report: Elapsed Time: '30000.794683'
2025-10-11 15:13:48 (13280): Status Report: CPU Time: '59078.656250'
2025-10-11 16:54:01 (13280): Status Report: Elapsed Time: '36000.794683'
2025-10-11 16:54:01 (13280): Status Report: CPU Time: '71022.046875'
2025-10-11 17:18:18 (13280): VM state change detected. (old = 'running', new = 'paused')
2025-10-11 17:18:38 (13280): VM state change detected. (old = 'paused', new = 'running')
2025-10-11 17:19:07 (13280): Guest Log:  *** Job finished ***
2025-10-11 17:19:07 (13280): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-10-11 17:19:07 (13280): Guest Log: 2025-10-11 15:16:58,901 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
2025-10-11 17:19:07 (13280): Guest Log: 2025-10-11 15:16:58,901 | WARNING  | will wait for a maximum of 300 s for threads to finish
2025-10-11 17:19:07 (13280): Guest Log: 2025-10-11 15:17:17,074 | INFO     | [monitor] cgroup control has ended
2025-10-11 17:19:07 (13280): Guest Log: 2025-10-11 15:17:18,440 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140198812092224)>', '<ExcThread(monitor, started 140198360884992)>']
2025-10-11 17:19:07 (13280): Guest Log: 2025-10-11 15:17:19,037 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-10-11 17:19:07 (13280): Guest Log: 2025-10-11 15:17:19,038 | INFO     | [monitor] control thread has ended
2025-10-11 17:19:07 (13280): Guest Log: 2025-10-11 15:17:23,536 | INFO     | all workflow threads have been joined
2025-10-11 17:19:07 (13280): Guest Log: 2025-10-11 15:17:23,537 | INFO     | end of generic workflow (traces error code: 0)
2025-10-11 17:19:07 (13280): Guest Log: 2025-10-11 15:17:23,539 | INFO     | traces error code: 0
2025-10-11 17:19:07 (13280): Guest Log: 2025-10-11 15:17:23,541 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-10-11 17:19:07 (13280): Guest Log: 2025-10-11 15:17:23,660 [wrapper] ==== pilot stdout END ====
2025-10-11 17:19:07 (13280): Guest Log: 2025-10-11 15:17:23,667 [wrapper] ==== wrapper stdout RESUME ====
2025-10-11 17:19:07 (13280): Guest Log: 2025-10-11 15:17:23,673 [wrapper] pilotpid: 5970
2025-10-11 17:19:07 (13280): Guest Log: 2025-10-11 15:17:23,679 [wrapper] Pilot exit status: 0
2025-10-11 17:19:07 (13280): Guest Log: 2025-10-11 15:17:23,741 [wrapper] pandaids: 6837329659
2025-10-11 17:19:07 (13280): Guest Log: 2025-10-11 15:17:23,780 [wrapper] cleanup supervisor_pilot 18015 5971
2025-10-11 17:19:07 (13280): Guest Log: 2025-10-11 15:17:23,787 [wrapper] Test setup, not cleaning
2025-10-11 17:19:07 (13280): Guest Log: 2025-10-11 15:17:23,796 [wrapper] apfmon messages muted
2025-10-11 17:19:07 (13280): Guest Log: 2025-10-11 15:17:23,805 [wrapper] ==== wrapper stdout END ====
2025-10-11 17:19:07 (13280): Guest Log: 2025-10-11 15:17:23,813 [wrapper] ==== wrapper stderr END ====
2025-10-11 17:19:07 (13280): Guest Log:  *** Error codes and diagnostics ***
2025-10-11 17:19:07 (13280): Guest Log:     "exeErrorCode": 0,
2025-10-11 17:19:07 (13280): Guest Log:     "exeErrorDiag": "",
2025-10-11 17:19:07 (13280): Guest Log:     "pilotErrorCode": 0,
2025-10-11 17:19:07 (13280): Guest Log:     "pilotErrorDiag": "",
2025-10-11 17:19:07 (13280): Guest Log:  *** Listing of results directory ***
2025-10-11 17:19:07 (13280): Guest Log: total 208472
2025-10-11 17:19:07 (13280): Guest Log: -rw-r--r--. 1 atlas atlas      5112 Oct  9 10:51 queuedata.json
2025-10-11 17:19:07 (13280): Guest Log: -rw-r--r--. 1 atlas atlas    557409 Oct  9 10:52 pilot3.tar.gz
2025-10-11 17:19:07 (13280): Guest Log: -rwx------. 1 atlas atlas     36292 Oct  9 10:55 runpilot2-wrapper.sh
2025-10-11 17:19:07 (13280): Guest Log: -rwxr-xr-x. 1 atlas atlas      9106 Oct 11 04:51 init_data.xml
2025-10-11 17:19:07 (13280): Guest Log: -rwxr-xr-x. 1 atlas atlas    569682 Oct 11 04:51 input.tar.gz
2025-10-11 17:19:07 (13280): Guest Log: -rwxr-xr-x. 1 atlas atlas     15120 Oct 11 04:51 start_atlas.sh
2025-10-11 17:19:07 (13280): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Oct 11 04:51 EVNT.46676267._000595.pool.root.1 -> /data/./ATLAS.root_0
2025-10-11 17:19:07 (13280): Guest Log: -rw-r--r--. 1 atlas atlas      2550 Oct 11 04:51 pandaJob.out
2025-10-11 17:19:07 (13280): Guest Log: -rw-------. 1 atlas atlas    975517 Oct 11 04:52 agis_schedconf.cvmfs.json
2025-10-11 17:19:07 (13280): Guest Log: drwx------. 5 atlas atlas      4096 Oct 11 04:52 pilot3
2025-10-11 17:19:07 (13280): Guest Log: -rw-------. 1 atlas atlas 197960707 Oct 11 15:15 HITS.46676269._014518.pool.root.1
2025-10-11 17:19:07 (13280): Guest Log: -rw-------. 1 atlas atlas      1027 Oct 11 15:16 memory_monitor_summary.json
2025-10-11 17:19:07 (13280): Guest Log: -rw-------. 1 atlas atlas   1560580 Oct 11 15:16 agis_ddmendpoints.agis.ALL.json
2025-10-11 17:19:07 (13280): Guest Log: -rw-------. 1 atlas atlas    700655 Oct 11 15:16 log.46676269._014518.job.log.tgz.1
2025-10-11 17:19:07 (13280): Guest Log: -rw-------. 1 atlas atlas        95 Oct 11 15:16 pilot_heartbeat.json
2025-10-11 17:19:07 (13280): Guest Log: -rw-------. 1 atlas atlas      7819 Oct 11 15:16 heartbeat.json
2025-10-11 17:19:07 (13280): Guest Log: -rw-------. 1 atlas atlas      4993 Oct 11 15:17 pilotlog.txt
2025-10-11 17:19:07 (13280): Guest Log: -rw-------. 1 atlas atlas   5138816 Oct 11 15:17 log.46676269._014518.job.log.1
2025-10-11 17:19:07 (13280): Guest Log: -rw-------. 1 atlas atlas       357 Oct 11 15:17 output.list
2025-10-11 17:19:07 (13280): Guest Log: -rw-r--r--. 1 atlas atlas       620 Oct 11 15:17 runtime_log
2025-10-11 17:19:07 (13280): Guest Log: -rw-------. 1 atlas atlas   5857280 Oct 11 15:17 result.tar.gz
2025-10-11 17:19:07 (13280): Guest Log: -rw-r--r--. 1 atlas atlas      8646 Oct 11 15:17 runtime_log.err
2025-10-11 17:19:07 (13280): Guest Log: -rw-------. 1 atlas atlas       661 Oct 11 15:17 emCNDmrT3Q8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm9NZNDmhbzd9m.diag
2025-10-11 17:19:07 (13280): Guest Log: Looking for outputfile HITS.46676269._014518.pool.root.1
2025-10-11 17:19:07 (13280): Guest Log: HITS file was successfully produced
2025-10-11 17:19:07 (13280): Guest Log: -rw-------. 1 atlas atlas 197960707 Oct 11 15:15 /home/atlas/RunAtlas/HITS.46676269._014518.pool.root.1
2025-10-11 17:19:09 (13280): Guest Log: Successfully finished the ATLAS job!
2025-10-11 17:19:09 (13280): Guest Log: Copying the results back to the shared directory!
2025-10-11 17:19:09 (13280): Guest Log:  *** Contents of shared directory: ***
2025-10-11 17:19:09 (13280): Guest Log: total 414916
2025-10-11 17:19:09 (13280): Guest Log: -rwxrwxrwx. 1 root root 220448085 Oct 11 04:50 ATLAS.root_0
2025-10-11 17:19:09 (13280): Guest Log: -rwxrwxrwx. 1 root root 197960707 Oct 11  2025 HITS.pool.root.1
2025-10-11 17:19:09 (13280): Guest Log: -rwxrwxrwx. 1 root root      9106 Oct 11 04:50 init_data.xml
2025-10-11 17:19:09 (13280): Guest Log: -rwxrwxrwx. 1 root root    569682 Oct  9 12:17 input.tar.gz
2025-10-11 17:19:09 (13280): Guest Log: -rwxrwxrwx. 1 root root   5857280 Oct 11  2025 result.tar.gz
2025-10-11 17:19:09 (13280): Guest Log: -rwxrwxrwx. 1 root root     15120 Oct  9 12:17 start_atlas.sh
2025-10-11 17:19:09 (13280): Guest Log:  *** Success! Shutting down the machine. ***
2025-10-11 17:19:09 (13280): VM Completion File Detected.
2025-10-11 17:19:09 (13280): Powering off VM.
2025-10-11 17:19:11 (13280): Successfully stopped VM.
2025-10-11 17:19:11 (13280): Deregistering VM. (boinc_0ad8176942a37e43, slot#0)
2025-10-11 17:19:12 (13280): Removing network bandwidth throttle group from VM.
2025-10-11 17:19:12 (13280): Removing VM from VirtualBox.
2025-10-11 17:19:18 (13280): called boinc_finish(0)

</stderr_txt>
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