Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
2025-10-10 10:37:18 (2359): vboxwrapper version 26210
2025-10-10 10:37:18 (2359): BOINC client version: 8.2.2
2025-10-10 10:37:18 (2359): Detected: VirtualBox VboxManage Interface (Version: 7.1.12)
2025-10-10 10:37:18 (2359): Successfully copied 'init_data.xml' to the shared directory.
2025-10-10 10:37:18 (2359): Create VM. (boinc_f919ffd6f01cea80, slot#0)
2025-10-10 10:37:18 (2359): Setting Memory Size for VM. (4400MB)
2025-10-10 10:37:19 (2359): Setting CPU Count for VM. (4)
2025-10-10 10:37:19 (2359): Setting Chipset Options for VM.
2025-10-10 10:37:19 (2359): Setting Graphics Controller Options for VM. (Driver: VBoxVGA, 16MB)
2025-10-10 10:37:19 (2359): Setting Boot Options for VM.
2025-10-10 10:37:19 (2359): Setting Network Configuration for NAT. (Driver: virtio)
2025-10-10 10:37:19 (2359): Enabling VM Network Access.
2025-10-10 10:37:19 (2359): Disabling USB Support for VM.
2025-10-10 10:37:19 (2359): Disabling COM Port Support for VM.
2025-10-10 10:37:19 (2359): Disabling LPT Port Support for VM.
2025-10-10 10:37:19 (2359): Disabling Audio Support for VM.
2025-10-10 10:37:19 (2359): Disabling Clipboard Support for VM.
2025-10-10 10:37:19 (2359): Disabling Drag and Drop Support for VM.
2025-10-10 10:37:19 (2359): Adding storage controller(s) to VM.
2025-10-10 10:37:19 (2359): Adding virtual disk drive to VM. (ATLAS_vbox_3.03_image.vdi)
2025-10-10 10:37:19 (2359): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-10-10 10:37:19 (2359): forwarding host port 49119 to guest port 80
2025-10-10 10:37:19 (2359): Enabling remote desktop for VM.
2025-10-10 10:37:19 (2359): Enabling shared directory for VM.
2025-10-10 10:37:20 (2359): Starting VM using VBoxManage interface. (boinc_f919ffd6f01cea80, slot#0)
2025-10-10 10:37:21 (2359): Successfully started VM. (PID = '2628')
2025-10-10 10:37:21 (2359): Reporting VM Process ID to BOINC.
2025-10-10 10:37:21 (2359): Guest Log: BIOS: VirtualBox 7.1.10
2025-10-10 10:37:21 (2359): Guest Log: CPUID EDX: 0x178bfbff
2025-10-10 10:37:21 (2359): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-10-10 10:37:21 (2359): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-10-10 10:37:21 (2359): VM state change detected. (old = 'poweredoff', new = 'running')
2025-10-10 10:37:21 (2359): Detected: Web Application Enabled (http://localhost:49119)
2025-10-10 10:37:21 (2359): Detected: Remote Desktop Enabled (localhost:37481)
2025-10-10 10:37:21 (2359): Preference change detected
2025-10-10 10:37:21 (2359): Setting CPU throttle for VM. (100%)
2025-10-10 10:37:21 (2359): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 300 seconds) or (Vbox_job.xml: 900 seconds))
2025-10-10 10:37:23 (2359): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-10-10 10:37:23 (2359): Guest Log: BIOS: Booting from Hard Disk...
2025-10-10 10:37:26 (2359): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-10-10 10:37:26 (2359): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-10-10 10:37:26 (2359): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-10-10 10:37:26 (2359): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-10-10 10:37:26 (2359): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-10-10 10:37:26 (2359): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-10-10 10:37:26 (2359): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-10-10 10:37:26 (2359): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-10-10 10:37:26 (2359): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-10-10 10:37:26 (2359): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-10-10 10:37:26 (2359): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-10-10 10:37:26 (2359): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-10-10 10:37:26 (2359): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-10-10 10:37:26 (2359): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-10-10 10:37:26 (2359): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-10-10 10:37:26 (2359): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-10-10 10:37:26 (2359): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-10-10 10:37:26 (2359): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-10-10 10:37:26 (2359): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-10-10 10:37:26 (2359): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-10-10 10:37:26 (2359): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-10-10 10:37:26 (2359): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-10-10 10:37:26 (2359): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-10-10 10:37:26 (2359): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-10-10 10:37:26 (2359): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-10-10 10:37:26 (2359): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-10-10 10:37:26 (2359): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-10-10 10:37:26 (2359): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-10-10 10:37:26 (2359): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-10-10 10:37:26 (2359): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-10-10 10:37:26 (2359): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-10-10 10:37:26 (2359): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-10-10 10:37:34 (2359): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-10-10 10:37:34 (2359): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-10-10 10:37:40 (2359): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-10-10 10:37:40 (2359): Guest Log: 00:00:00.000419 main     Log opened 2025-10-10T08:37:39.774700000Z
2025-10-10 10:37:40 (2359): Guest Log: 00:00:00.000653 main     OS Product: Linux
2025-10-10 10:37:40 (2359): Guest Log: 00:00:00.000726 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-10-10 10:37:40 (2359): Guest Log: 00:00:00.000785 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-10-10 10:37:40 (2359): Guest Log: 00:00:00.000863 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-10-10 10:37:40 (2359): Guest Log: 00:00:00.000865 main     Process ID: 1307
2025-10-10 10:37:40 (2359): Guest Log: 00:00:00.000866 main     Package type: LINUX_64BITS_GENERIC
2025-10-10 10:37:40 (2359): Guest Log: 00:00:00.003214 main     5.2.32 r132073 started. Verbose level = 0
2025-10-10 10:37:40 (2359): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-10-10 10:37:40 (2359): Guest Log: [INFO] Mounting shared directory
2025-10-10 10:37:41 (2359): Guest Log: [INFO] Checking for init_data.xml
2025-10-10 10:38:15 (2359): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-10-10 10:38:15 (2359): Guest Log: [INFO] Detected branch: prod
2025-10-10 10:38:15 (2359): Guest Log: This is the prod version of the ATLAS job wrapper
2025-10-10 10:38:15 (2359): Guest Log: Copying input files
2025-10-10 10:38:17 (2359): Guest Log: Copied input files into RunAtlas.
2025-10-10 10:38:17 (2359): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-10-10 10:38:17 (2359): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-10-10 10:38:17 (2359): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-10-10 10:38:17 (2359): Guest Log: Further information can be found at the LHC@home message board.
2025-10-10 10:38:28 (2359): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-10-10 10:38:29 (2359): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-10-10 10:38:29 (2359): Guest Log: 2.6.3.0 1605 0 32224 151539 4 1 3117639 4096000 0 65024 0 0 n/a 0 0 http://s1swinburne-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
2025-10-10 10:38:30 (2359): Guest Log: copied the webapp to /var/www
2025-10-10 10:38:30 (2359): Guest Log: ATHENA_PROC_NUMBER=4
2025-10-10 10:38:30 (2359): Guest Log: ATHENA_CORE_NUMBER=4
2025-10-10 10:38:30 (2359): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-10-10 10:38:30 (2359): Guest Log:  *** Starting ATLAS job. (PandaID=6837327875 taskID=46676269) ***
2025-10-10 12:16:21 (2359): Status Report: Elapsed Time: '6000.000000'
2025-10-10 12:16:21 (2359): Status Report: CPU Time: '20721.670000'
2025-10-10 13:40:50 (2359): Guest Log:  *** Job finished ***
2025-10-10 13:40:50 (2359): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-10-10 13:40:50 (2359): Guest Log: 2025-10-10 11:40:38,248 | WARNING  | will wait for a maximum of 300 s for threads to finish
2025-10-10 13:40:50 (2359): Guest Log: 2025-10-10 11:40:40,443 | INFO     | [monitor] cgroup control has ended
2025-10-10 13:40:50 (2359): Guest Log: 2025-10-10 11:40:42,492 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140004618831680)>', '<ExcThread(monitor, started 140004030400256)>']
2025-10-10 13:40:50 (2359): Guest Log: 2025-10-10 11:40:43,302 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-10-10 13:40:50 (2359): Guest Log: 2025-10-10 11:40:43,302 | INFO     | [monitor] control thread has ended
2025-10-10 13:40:50 (2359): Guest Log: 2025-10-10 11:40:43,852 [wrapper] supervise_pilot (15 min periods counter: 13)
2025-10-10 13:40:50 (2359): Guest Log: 2025-10-10 11:40:47,493 | INFO     | all workflow threads have been joined
2025-10-10 13:40:50 (2359): Guest Log: 2025-10-10 11:40:47,494 | INFO     | end of generic workflow (traces error code: 0)
2025-10-10 13:40:50 (2359): Guest Log: 2025-10-10 11:40:47,495 | INFO     | traces error code: 0
2025-10-10 13:40:50 (2359): Guest Log: 2025-10-10 11:40:47,495 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-10-10 13:40:50 (2359): Guest Log: 2025-10-10 11:40:47,625 [wrapper] ==== pilot stdout END ====
2025-10-10 13:40:50 (2359): Guest Log: 2025-10-10 11:40:47,638 [wrapper] ==== wrapper stdout RESUME ====
2025-10-10 13:40:50 (2359): Guest Log: 2025-10-10 11:40:47,649 [wrapper] pilotpid: 6013
2025-10-10 13:40:50 (2359): Guest Log: 2025-10-10 11:40:47,661 [wrapper] Pilot exit status: 0
2025-10-10 13:40:50 (2359): Guest Log: 2025-10-10 11:40:48,628 [wrapper] pandaids: 6837327875
2025-10-10 13:40:50 (2359): Guest Log: 2025-10-10 11:40:48,713 [wrapper] cleanup supervisor_pilot 12847 6014
2025-10-10 13:40:50 (2359): Guest Log: 2025-10-10 11:40:48,725 [wrapper] Test setup, not cleaning
2025-10-10 13:40:50 (2359): Guest Log: 2025-10-10 11:40:48,738 [wrapper] apfmon messages muted
2025-10-10 13:40:50 (2359): Guest Log: 2025-10-10 11:40:48,751 [wrapper] ==== wrapper stdout END ====
2025-10-10 13:40:50 (2359): Guest Log: 2025-10-10 11:40:48,764 [wrapper] ==== wrapper stderr END ====
2025-10-10 13:40:50 (2359): Guest Log:  *** Error codes and diagnostics ***
2025-10-10 13:40:50 (2359): Guest Log:     "exeErrorCode": 0,
2025-10-10 13:40:50 (2359): Guest Log:     "exeErrorDiag": "",
2025-10-10 13:40:50 (2359): Guest Log:     "pilotErrorCode": 0,
2025-10-10 13:40:50 (2359): Guest Log:     "pilotErrorDiag": "",
2025-10-10 13:40:50 (2359): Guest Log:  *** Listing of results directory ***
2025-10-10 13:40:50 (2359): Guest Log: total 193480
2025-10-10 13:40:50 (2359): Guest Log: -rw-r--r--. 1 atlas atlas    557409 Oct  9 10:27 pilot3.tar.gz
2025-10-10 13:40:50 (2359): Guest Log: -rwx------. 1 atlas atlas     36292 Oct  9 10:43 runpilot2-wrapper.sh
2025-10-10 13:40:50 (2359): Guest Log: -rw-r--r--. 1 atlas atlas      5112 Oct  9 10:45 queuedata.json
2025-10-10 13:40:50 (2359): Guest Log: -rw-r--r--. 1 atlas atlas      5961 Oct 10 08:38 init_data.xml
2025-10-10 13:40:50 (2359): Guest Log: -rw-r--r--. 1 atlas atlas     15120 Oct 10 08:38 start_atlas.sh
2025-10-10 13:40:50 (2359): Guest Log: -rw-r--r--. 1 atlas atlas    569681 Oct 10 08:38 input.tar.gz
2025-10-10 13:40:50 (2359): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Oct 10 08:38 EVNT.46676267._000542.pool.root.1 -> /data/./ATLAS.root_0
2025-10-10 13:40:50 (2359): Guest Log: -rw-r--r--. 1 atlas atlas      2550 Oct 10 08:38 pandaJob.out
2025-10-10 13:40:50 (2359): Guest Log: -rw-------. 1 atlas atlas    975462 Oct 10 08:41 agis_schedconf.cvmfs.json
2025-10-10 13:40:50 (2359): Guest Log: -rw-------. 1 atlas atlas   1560580 Oct 10 08:41 agis_ddmendpoints.agis.ALL.json
2025-10-10 13:40:50 (2359): Guest Log: drwx------. 5 atlas atlas      4096 Oct 10 08:41 pilot3
2025-10-10 13:40:50 (2359): Guest Log: -rw-------. 1 atlas atlas 190841768 Oct 10 11:39 HITS.46676269._013309.pool.root.1
2025-10-10 13:40:50 (2359): Guest Log: -rw-------. 1 atlas atlas      1032 Oct 10 11:39 memory_monitor_summary.json
2025-10-10 13:40:50 (2359): Guest Log: -rw-------. 1 atlas atlas    337259 Oct 10 11:39 log.46676269._013309.job.log.tgz.1
2025-10-10 13:40:50 (2359): Guest Log: -rw-------. 1 atlas atlas      7783 Oct 10 11:40 heartbeat.json
2025-10-10 13:40:50 (2359): Guest Log: -rw-------. 1 atlas atlas        95 Oct 10 11:40 pilot_heartbeat.json
2025-10-10 13:40:50 (2359): Guest Log: -rw-------. 1 atlas atlas      4877 Oct 10 11:40 pilotlog.txt
2025-10-10 13:40:50 (2359): Guest Log: -rw-------. 1 atlas atlas   1388832 Oct 10 11:40 log.46676269._013309.job.log.1
2025-10-10 13:40:50 (2359): Guest Log: -rw-------. 1 atlas atlas       357 Oct 10 11:40 output.list
2025-10-10 13:40:50 (2359): Guest Log: -rw-r--r--. 1 atlas atlas       620 Oct 10 11:40 runtime_log
2025-10-10 13:40:50 (2359): Guest Log: -rw-------. 1 atlas atlas   1740800 Oct 10 11:40 result.tar.gz
2025-10-10 13:40:50 (2359): Guest Log: -rw-r--r--. 1 atlas atlas      8606 Oct 10 11:40 runtime_log.err
2025-10-10 13:40:50 (2359): Guest Log: -rw-------. 1 atlas atlas       650 Oct 10 11:40 5X7LDmkI3Q8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmLEZNDmyaQNSm.diag
2025-10-10 13:40:50 (2359): Guest Log: Looking for outputfile HITS.46676269._013309.pool.root.1
2025-10-10 13:40:50 (2359): Guest Log: HITS file was successfully produced
2025-10-10 13:40:50 (2359): Guest Log: -rw-------. 1 atlas atlas 190841768 Oct 10 11:39 /home/atlas/RunAtlas/HITS.46676269._013309.pool.root.1
2025-10-10 13:40:50 (2359): Guest Log: Successfully finished the ATLAS job!
2025-10-10 13:40:50 (2359): Guest Log: Copying the results back to the shared directory!
2025-10-10 13:40:50 (2359): Guest Log:  *** Contents of shared directory: ***
2025-10-10 13:40:50 (2359): Guest Log: total 218736
2025-10-10 13:40:50 (2359): Guest Log: -rw-r--r--. 1 root root 221641396 Oct 10 08:37 ATLAS.root_0
2025-10-10 13:40:50 (2359): Guest Log: -rw-r--r--. 1 root root      5961 Oct 10 08:37 init_data.xml
2025-10-10 13:40:50 (2359): Guest Log: -rw-r--r--. 1 root root    569681 Oct 10 08:37 input.tar.gz
2025-10-10 13:40:50 (2359): Guest Log: -rw-r--r--. 1 root root   1740800 Oct 10 11:40 result.tar.gz
2025-10-10 13:40:50 (2359): Guest Log: -rw-r--r--. 1 root root     15120 Oct 10 08:37 start_atlas.sh
2025-10-10 13:40:50 (2359): Guest Log:  *** Success! Shutting down the machine. ***
2025-10-10 13:40:51 (2359): VM Completion File Detected.
2025-10-10 13:40:51 (2359): Powering off VM.
2025-10-10 13:40:51 (2359): Successfully stopped VM.
2025-10-10 13:40:51 (2359): Deregistering VM. (boinc_f919ffd6f01cea80, slot#0)
2025-10-10 13:40:51 (2359): Removing network bandwidth throttle group from VM.
2025-10-10 13:40:52 (2359): Removing VM from VirtualBox.
2025-10-10 13:40:57 (2359): called boinc_finish(0)

</stderr_txt>
]]>

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