Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
06:44:38 (4092083): wrapper (7.7.26015): starting
06:44:38 (4092083): wrapper: running run_atlas (--nthreads 9)
[2025-10-09 06:44:38] Arguments: --nthreads 9
[2025-10-09 06:44:38] Threads: 9
[2025-10-09 06:44:38] Checking for CVMFS
[2025-10-09 06:44:39] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-09 06:44:40] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-09 06:44:40] Running cvmfs_config stat atlas.cern.ch
[2025-10-09 06:44:41] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-09 06:44:41] 2.13.2.0 3821245 124838 278836 151509 1 396 15014197 21042176 21495 16776704 0 70983876 99.332 126034051 31129 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-10-09 06:44:41] CVMFS is ok
[2025-10-09 06:44:41] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-09 06:44:41] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-09 06:44:41] Further information can be found at the LHC@home message board.
[2025-10-09 06:44:41] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-09 06:44:41] Checking for apptainer binary...
[2025-10-09 06:44:41] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-09 06:44:41] Running /usr/bin/apptainer --version
[2025-10-09 06:44:41] apptainer version 1.4.2-1.el9
[2025-10-09 06:44:41] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-09 06:44:42] c-6-1.aglt2.org
[2025-10-09 06:44:42] apptainer works
[2025-10-09 06:44:42] Set ATHENA_PROC_NUMBER=9
[2025-10-09 06:44:42] Set ATHENA_CORE_NUMBER=9
[2025-10-09 06:44:42] Starting ATLAS job with PandaID=6837322608
[2025-10-09 06:44:42] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
08:27:36 (796666): wrapper (7.7.26015): starting
08:27:36 (796666): wrapper: running run_atlas (--nthreads 12)
[2025-10-11 08:27:36] Arguments: --nthreads 12
[2025-10-11 08:27:36] Threads: 12
[2025-10-11 08:27:36] This job has been restarted, cleaning up previous attempt
[2025-10-11 08:27:36] Checking for CVMFS
[2025-10-11 08:27:36] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-11 08:27:37] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-11 08:27:37] Running cvmfs_config stat atlas.cern.ch
[2025-10-11 08:27:38] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-11 08:27:38] 2.13.2.0 3821245 127821 292712 151584 2 249 19430758 21042176 24424 16776704 0 78662971 99.351 136677622 30983 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-10-11 08:27:38] CVMFS is ok
[2025-10-11 08:27:38] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-11 08:27:38] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-11 08:27:38] Further information can be found at the LHC@home message board.
[2025-10-11 08:27:38] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-11 08:27:38] Checking for apptainer binary...
[2025-10-11 08:27:38] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-11 08:27:38] Running /usr/bin/apptainer --version
[2025-10-11 08:27:38] apptainer version 1.4.2-1.el9
[2025-10-11 08:27:38] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-11 08:27:38] c-6-1.aglt2.org
[2025-10-11 08:27:38] apptainer works
[2025-10-11 08:27:38] Set ATHENA_PROC_NUMBER=12
[2025-10-11 08:27:38] Set ATHENA_CORE_NUMBER=12
[2025-10-11 08:27:38] Starting ATLAS job with PandaID=6837322608
[2025-10-11 08:27:38] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-11 18:24:58]  *** The last 200 lines of the pilot log: ***
[2025-10-11 18:24:58] 2025-10-11 22:24:16,191 | INFO     | sum of square deviations: 61758809336.65577
[2025-10-11 18:24:58] 2025-10-11 22:24:16,305 | INFO     | sum of deviations: -363652214520.1695
[2025-10-11 18:24:58] 2025-10-11 22:24:16,305 | INFO     | mean x: 1760203604.0633562
[2025-10-11 18:24:58] 2025-10-11 22:24:16,305 | INFO     | mean y: 2313007.4640410957
[2025-10-11 18:24:58] 2025-10-11 22:24:16,306 | INFO     | -- intersect: 10366857685.369656
[2025-10-11 18:24:58] 2025-10-11 22:24:16,306 | INFO     | intersect: 10366857685.369656
[2025-10-11 18:24:58] 2025-10-11 22:24:16,307 | INFO     | chi2: 5.345963933874309
[2025-10-11 18:24:58] 2025-10-11 22:24:16,307 | INFO     | sum of square deviations: 60186117400.0552
[2025-10-11 18:24:58] 2025-10-11 22:24:16,392 | INFO     | sum of deviations: -245828815027.8878
[2025-10-11 18:24:58] 2025-10-11 22:24:16,430 | INFO     | mean x: 1760203451.568221
[2025-10-11 18:24:58] 2025-10-11 22:24:16,430 | INFO     | mean y: 2324405.0604490503
[2025-10-11 18:24:58] 2025-10-11 22:24:16,430 | INFO     | -- intersect: 7191834999.8511505
[2025-10-11 18:24:58] 2025-10-11 22:24:16,430 | INFO     | intersect: 7191834999.8511505
[2025-10-11 18:24:58] 2025-10-11 22:24:16,431 | INFO     | chi2: 3.2505839658067694
[2025-10-11 18:24:58] 2025-10-11 22:24:16,431 | INFO     | current chi2=3.2505839658067694 (change=39.19555002588622 %)
[2025-10-11 18:24:58] 2025-10-11 22:24:16,432 | INFO     | sum of square deviations: 58640320882.071365
[2025-10-11 18:24:58] 2025-10-11 22:24:16,430 | INFO     | monitor loop #1698: job 0:6837322608 is in state 'finished'
[2025-10-11 18:24:58] 2025-10-11 22:24:16,520 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-11 18:24:58] 2025-10-11 22:24:16,497 | INFO     | sum of deviations: -210677829588.57156
[2025-10-11 18:24:58] 2025-10-11 22:24:16,593 | INFO     | mean x: 1760203299.0714285
[2025-10-11 18:24:58] 2025-10-11 22:24:16,593 | INFO     | mean y: 2327869.843205575
[2025-10-11 18:24:58] 2025-10-11 22:24:16,593 | INFO     | -- intersect: 6326232737.771561
[2025-10-11 18:24:58] 2025-10-11 22:24:16,593 | INFO     | intersect: 6326232737.771561
[2025-10-11 18:24:58] 2025-10-11 22:24:16,602 | INFO     | chi2: 3.1183824718808006
[2025-10-11 18:24:58] 2025-10-11 22:24:16,603 | INFO     | current chi2=3.1183824718808006 (change=4.067007507469737 %)
[2025-10-11 18:24:58] 2025-10-11 22:24:16,603 | INFO     | right removable region: 573
[2025-10-11 18:24:58] 2025-10-11 22:24:16,604 | INFO     | sum of square deviations: 60185916710.05521
[2025-10-11 18:24:58] 2025-10-11 22:24:16,717 | INFO     | sum of deviations: -474951262323.66144
[2025-10-11 18:24:58] 2025-10-11 22:24:16,717 | INFO     | mean x: 1760203756.568221
[2025-10-11 18:24:58] 2025-10-11 22:24:16,718 | INFO     | mean y: 2323775.1053540586
[2025-10-11 18:24:58] 2025-10-11 22:24:16,718 | INFO     | -- intersect: 13892799185.763275
[2025-10-11 18:24:58] 2025-10-11 22:24:16,718 | INFO     | intersect: 13892799185.763275
[2025-10-11 18:24:58] 2025-10-11 22:24:16,719 | INFO     | chi2: 3.4305074869525947
[2025-10-11 18:24:58] 2025-10-11 22:24:16,719 | INFO     | current chi2=3.4305074869525947 (change=35.829954534196624 %)
[2025-10-11 18:24:58] 2025-10-11 22:24:16,720 | INFO     | sum of square deviations: 58639954820.9273
[2025-10-11 18:24:58] 2025-10-11 22:24:16,765 | INFO     | sum of deviations: -491310356051.68286
[2025-10-11 18:24:58] 2025-10-11 22:24:16,765 | INFO     | mean x: 1760203909.0731707
[2025-10-11 18:24:58] 2025-10-11 22:24:16,765 | INFO     | mean y: 2325380.1829268294
[2025-10-11 18:24:58] 2025-10-11 22:24:16,765 | INFO     | -- intersect: 14750058592.652475
[2025-10-11 18:24:58] 2025-10-11 22:24:16,766 | INFO     | intersect: 14750058592.652475
[2025-10-11 18:24:58] 2025-10-11 22:24:16,766 | INFO     | chi2: 3.3031850058016645
[2025-10-11 18:24:58] 2025-10-11 22:24:16,767 | INFO     | current chi2=3.3031850058016645 (change=3.7114765566080683 %)
[2025-10-11 18:24:58] 2025-10-11 22:24:16,767 | INFO     | left removable region: 20
[2025-10-11 18:24:58] 2025-10-11 22:24:16,768 | INFO     | sum of square deviations: 52436295654.1698
[2025-10-11 18:24:58] 2025-10-11 22:24:16,784 | INFO     | sum of deviations: -275761230602.899
[2025-10-11 18:24:58] 2025-10-11 22:24:16,784 | INFO     | mean x: 1760203878.585895
[2025-10-11 18:24:58] 2025-10-11 22:24:16,790 | INFO     | mean y: 2335095.9873417723
[2025-10-11 18:24:58] 2025-10-11 22:24:16,790 | INFO     | -- intersect: 9259205391.939358
[2025-10-11 18:24:58] 2025-10-11 22:24:16,790 | INFO     | intersect: 9259205391.939358
[2025-10-11 18:24:58] 2025-10-11 22:24:16,791 | INFO     | chi2: 0.9501114494660786
[2025-10-11 18:24:58] 2025-10-11 22:24:16,791 | INFO     | -- intersect: 9259205391.939358
[2025-10-11 18:24:58] 2025-10-11 22:24:16,791 | INFO     | current memory leak: -5.26 B/s (using 553 data points, chi2=0.95)
[2025-10-11 18:24:58] 2025-10-11 22:24:16,792 | INFO     | could have reported an average CPU frequency of 2600 MHz (23 samples)
[2025-10-11 18:24:58] 2025-10-11 22:24:16,792 | INFO     | ..............................
[2025-10-11 18:24:58] 2025-10-11 22:24:16,793 | INFO     | . Timing measurements:
[2025-10-11 18:24:58] 2025-10-11 22:24:16,793 | INFO     | . get job = 0 s
[2025-10-11 18:24:58] 2025-10-11 22:24:16,793 | INFO     | . initial setup = 5 s
[2025-10-11 18:24:58] 2025-10-11 22:24:16,793 | INFO     | . payload setup = 23 s
[2025-10-11 18:24:58] 2025-10-11 22:24:16,793 | INFO     | . stage-in = 0 s
[2025-10-11 18:24:58] 2025-10-11 22:24:16,793 | INFO     | . payload execution = 35607 s
[2025-10-11 18:24:58] 2025-10-11 22:24:16,793 | INFO     | . stage-out = 6 s
[2025-10-11 18:24:58] 2025-10-11 22:24:16,793 | INFO     | . log creation = 2 s
[2025-10-11 18:24:58] 2025-10-11 22:24:16,793 | INFO     | ..............................
[2025-10-11 18:24:58] 2025-10-11 22:24:17,653 | INFO     | 
[2025-10-11 18:24:58] 2025-10-11 22:24:17,653 | INFO     | job summary report
[2025-10-11 18:24:58] 2025-10-11 22:24:17,653 | INFO     | --------------------------------------------------
[2025-10-11 18:24:58] 2025-10-11 22:24:17,653 | INFO     | PanDA job id: 6837322608
[2025-10-11 18:24:58] 2025-10-11 22:24:17,653 | INFO     | task id: 46676269
[2025-10-11 18:24:58] 2025-10-11 22:24:17,653 | INFO     | errors: (none)
[2025-10-11 18:24:58] 2025-10-11 22:24:17,658 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-11 18:24:58] 2025-10-11 22:24:17,658 | INFO     | pilot state: finished 
[2025-10-11 18:24:58] 2025-10-11 22:24:17,658 | INFO     | transexitcode: 0
[2025-10-11 18:24:58] 2025-10-11 22:24:17,658 | INFO     | exeerrorcode: 0
[2025-10-11 18:24:58] 2025-10-11 22:24:17,658 | INFO     | exeerrordiag: 
[2025-10-11 18:24:58] 2025-10-11 22:24:17,658 | INFO     | exitcode: 0
[2025-10-11 18:24:58] 2025-10-11 22:24:17,658 | INFO     | exitmsg: OK
[2025-10-11 18:24:58] 2025-10-11 22:24:17,658 | INFO     | cpuconsumptiontime: 49872 s
[2025-10-11 18:24:58] 2025-10-11 22:24:17,659 | INFO     | nevents: 400
[2025-10-11 18:24:58] 2025-10-11 22:24:17,659 | INFO     | neventsw: 0
[2025-10-11 18:24:58] 2025-10-11 22:24:17,659 | INFO     | pid: 809562
[2025-10-11 18:24:58] 2025-10-11 22:24:17,659 | INFO     | pgrp: 809562
[2025-10-11 18:24:58] 2025-10-11 22:24:17,659 | INFO     | corecount: 12
[2025-10-11 18:24:58] 2025-10-11 22:24:17,659 | INFO     | event service: False
[2025-10-11 18:24:58] 2025-10-11 22:24:17,659 | INFO     | sizes: {0: 2348629, 1: 2348884, 2: 2348884, 12: 2348912, 23: 2348940, 26: 2349230, 34: 2349386, 35637: 2388987, 35646: 2398041, 35687: 2398179}
[2025-10-11 18:24:58] 2025-10-11 22:24:17,659 | INFO     | --------------------------------------------------
[2025-10-11 18:24:58] 2025-10-11 22:24:17,659 | INFO     | 
[2025-10-11 18:24:58] 2025-10-11 22:24:17,660 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-10-11 18:24:58] 2025-10-11 22:24:17,905 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-11 18:24:58] 2025-10-11 22:24:17,905 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-11 18:24:58] 2025-10-11 22:24:17,906 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-11 18:24:58] 2025-10-11 22:24:17,906 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-11 18:24:58] 2025-10-11 22:24:17,906 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-11 18:24:58] 2025-10-11 22:24:17,906 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-11 18:24:58] 2025-10-11 22:24:17,906 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-11 18:24:58] 2025-10-11 22:24:17,906 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-11 18:24:58] 2025-10-11 22:24:17,906 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-11 18:24:58] 2025-10-11 22:24:17,906 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-11 18:24:58] 2025-10-11 22:24:17,906 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-11 18:24:58] 2025-10-11 22:24:17,906 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-11 18:24:58] 2025-10-11 22:24:17,907 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-11 18:24:58] 2025-10-11 22:24:17,907 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-11 18:24:58] 2025-10-11 22:24:17,907 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-11 18:24:58] 2025-10-11 22:24:17,907 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-11 18:24:58] 2025-10-11 22:24:17,907 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-11 18:24:58] 2025-10-11 22:24:17,907 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-11 18:24:58] 2025-10-11 22:24:17,907 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-11 18:24:58] 2025-10-11 22:24:17,907 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-11 18:24:58] 2025-10-11 22:24:17,907 | INFO     | job 6837322608 has completed (purged errors)
[2025-10-11 18:24:58] 2025-10-11 22:24:17,908 | INFO     | overall cleanup function is called
[2025-10-11 18:24:58] 2025-10-11 22:24:19,037 | INFO     | --- collectZombieJob: --- 10, [809562]
[2025-10-11 18:24:58] 2025-10-11 22:24:19,037 | INFO     | zombie collector waiting for pid 809562
[2025-10-11 18:24:58] 2025-10-11 22:24:19,037 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-11 18:24:58] 2025-10-11 22:24:19,037 | INFO     | collected zombie processes
[2025-10-11 18:24:58] 2025-10-11 22:24:19,037 | INFO     | will attempt to kill all subprocesses of pid=809562
[2025-10-11 18:24:58] 2025-10-11 22:24:21,053 | INFO     | PID=801001 has CPU usage=3.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-10-11 18:24:58] 2025-10-11 22:24:21,053 | INFO     | .. there are 41 such processes running
[2025-10-11 18:24:58] 2025-10-11 22:24:21,214 | INFO     | process IDs to be killed: [809562] (in reverse order)
[2025-10-11 18:24:58] 2025-10-11 22:24:21,368 | WARNING  | found no corresponding commands to process id(s)
[2025-10-11 18:24:58] 2025-10-11 22:24:21,369 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-11 18:24:58] 2025-10-11 22:24:21,398 | INFO     | did not find any defunct processes belonging to 809562
[2025-10-11 18:24:58] 2025-10-11 22:24:21,426 | INFO     | did not find any defunct processes belonging to 809562
[2025-10-11 18:24:58] 2025-10-11 22:24:21,430 | INFO     | ready for new job
[2025-10-11 18:24:58] 2025-10-11 22:24:21,430 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-11 18:24:58] 2025-10-11 22:24:21,437 | INFO     | ***************************************
[2025-10-11 18:24:58] 2025-10-11 22:24:21,437 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-11 18:24:58] 2025-10-11 22:24:21,437 | INFO     | ***************************************
[2025-10-11 18:24:58] 2025-10-11 22:24:21,437 | INFO     | 
[2025-10-11 18:24:58] 2025-10-11 22:24:21,452 | INFO     | architecture information:
[2025-10-11 18:24:58] 2025-10-11 22:24:21,457 | INFO     | executing command: cat /etc/os-release
[2025-10-11 18:24:58] 2025-10-11 22:24:21,699 | INFO     | cat /etc/os-release:
[2025-10-11 18:24:58] NAME="CentOS Linux"
[2025-10-11 18:24:58] VERSION="7 (Core)"
[2025-10-11 18:24:58] ID="centos"
[2025-10-11 18:24:58] ID_LIKE="rhel fedora"
[2025-10-11 18:24:58] VERSION_ID="7"
[2025-10-11 18:24:58] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-11 18:24:58] ANSI_COLOR="0;31"
[2025-10-11 18:24:58] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-11 18:24:58] HOME_URL="https://www.centos.org/"
[2025-10-11 18:24:58] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-11 18:24:58] 
[2025-10-11 18:24:58] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-11 18:24:58] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-11 18:24:58] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-11 18:24:58] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-11 18:24:58] 
[2025-10-11 18:24:58] 2025-10-11 22:24:21,699 | INFO     | ***************************************
[2025-10-11 18:24:58] 2025-10-11 22:24:22,211 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-10-11 18:24:58] 2025-10-11 22:24:22,530 | INFO     | sufficient remaining disk space (51725205504 B)
[2025-10-11 18:24:58] 2025-10-11 22:24:22,530 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-11 18:24:58] 2025-10-11 22:24:22,531 | INFO     | current server update state: UPDATING_FINAL
[2025-10-11 18:24:58] 2025-10-11 22:24:22,531 | INFO     | update_server=False
[2025-10-11 18:24:58] 2025-10-11 22:24:22,531 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-11 18:24:58] 2025-10-11 22:24:22,552 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-11 18:24:58] 2025-10-11 22:24:22,657 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-11 18:24:58] 2025-10-11 22:24:22,657 | INFO     | aborting loop
[2025-10-11 18:24:58] 2025-10-11 22:24:22,759 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-11 18:24:58] 2025-10-11 22:24:22,921 | INFO     | all data control threads have been joined
[2025-10-11 18:24:58] 2025-10-11 22:24:23,509 | INFO     | all job control threads have been joined
[2025-10-11 18:24:58] 2025-10-11 22:24:23,536 | INFO     | [job] retrieve thread has finished
[2025-10-11 18:24:58] 2025-10-11 22:24:23,631 | INFO     | [payload] validate_pre thread has finished
[2025-10-11 18:24:58] 2025-10-11 22:24:23,666 | INFO     | [job] job monitor thread has finished
[2025-10-11 18:24:58] 2025-10-11 22:24:23,726 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-11 18:24:58] 2025-10-11 22:24:23,771 | INFO     | [job] queue monitor thread has finished
[2025-10-11 18:24:58] 2025-10-11 22:24:23,915 | INFO     | [payload] failed_post thread has finished
[2025-10-11 18:24:58] 2025-10-11 22:24:23,928 | INFO     | [data] control thread has finished
[2025-10-11 18:24:58] 2025-10-11 22:24:23,990 | INFO     | all payload control threads have been joined
[2025-10-11 18:24:58] 2025-10-11 22:24:24,168 | INFO     | [payload] validate_post thread has finished
[2025-10-11 18:24:58] 2025-10-11 22:24:24,219 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-11 18:24:58] 2025-10-11 22:24:24,219 | INFO     | [job] create_data_payload thread has finished
[2025-10-11 18:24:58] 2025-10-11 22:24:24,224 | INFO     | [data] copytool_in thread has finished
[2025-10-11 18:24:58] 2025-10-11 22:24:24,404 | INFO     | [job] validate thread has finished
[2025-10-11 18:24:58] 2025-10-11 22:24:24,416 | INFO     | [payload] execute_payloads thread has finished
[2025-10-11 18:24:58] 2025-10-11 22:24:24,516 | INFO     | [job] control thread has finished
[2025-10-11 18:24:58] 2025-10-11 22:24:24,560 | INFO     | [data] copytool_out thread has finished
[2025-10-11 18:24:58] 2025-10-11 22:24:25,013 | INFO     | [payload] control thread has finished
[2025-10-11 18:24:58] 2025-10-11 22:24:27,756 | INFO     | [data] queue_monitor thread has finished
[2025-10-11 18:24:58] 2025-10-11 22:24:40,235 | INFO     | [monitor] cgroup control has ended
[2025-10-11 18:24:58] 2025-10-11 22:24:41,773 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139909577541440)>', '<ExcThread(monitor, started 139908492556032)>']
[2025-10-11 18:24:58] 2025-10-11 22:24:46,798 | INFO     | all workflow threads have been joined
[2025-10-11 18:24:58] 2025-10-11 22:24:46,799 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-11 18:24:58] 2025-10-11 22:24:46,799 | INFO     | traces error code: 0
[2025-10-11 18:24:58] 2025-10-11 22:24:46,799 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-11 18:24:58] 2025-10-11 22:24:55,844 | INFO     | PID=801001 has CPU usage=3.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-10-11 18:24:58] 2025-10-11 22:24:55,844 | INFO     | .. there are 41 such processes running
[2025-10-11 18:24:58] 2025-10-11 22:24:55,912 | INFO     | found 0 job(s) in 20 queues
[2025-10-11 18:24:58] 2025-10-11 22:24:55,912 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-11 18:24:58] 2025-10-11 22:24:55,912 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-11 18:24:58] 2025-10-11 22:24:55,912 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-11 18:24:58] 2025-10-11 22:24:55,913 | INFO     | [monitor] control thread has ended
[2025-10-11 18:24:58] 2025-10-11 22:24:56,212 [wrapper] ==== pilot stdout END ====
[2025-10-11 18:24:58] 2025-10-11 22:24:56,248 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-11 18:24:58] 2025-10-11 22:24:56,337 [wrapper] pilotpid: 801001
[2025-10-11 18:24:58] 2025-10-11 22:24:56,361 [wrapper] Pilot exit status: 0
[2025-10-11 18:24:58] 2025-10-11 22:24:56,578 [wrapper] pandaids: 6837322608 6837322608
[2025-10-11 18:24:58] 2025-10-11 22:24:57,284 [wrapper] cleanup supervisor_pilot 2571908 801002
[2025-10-11 18:24:58] 2025-10-11 22:24:57,300 [wrapper] Test setup, not cleaning
[2025-10-11 18:24:58] 2025-10-11 22:24:57,314 [wrapper] apfmon messages muted
[2025-10-11 18:24:58] 2025-10-11 22:24:57,355 [wrapper] ==== wrapper stdout END ====
[2025-10-11 18:24:58] 2025-10-11 22:24:57,375 [wrapper] ==== wrapper stderr END ====
[2025-10-11 18:24:58]  *** Error codes and diagnostics ***
[2025-10-11 18:24:58]     "exeErrorCode": 0,
[2025-10-11 18:24:58]     "exeErrorDiag": "",
[2025-10-11 18:24:58]     "pilotErrorCode": 0,
[2025-10-11 18:24:58]     "pilotErrorDiag": "",
[2025-10-11 18:24:58]  *** Listing of results directory ***
[2025-10-11 18:24:58] total 629076
[2025-10-11 18:24:58] drwx------. 5 boincer umatlas      4096 Oct  7 03:00 pilot3
[2025-10-11 18:24:58] -rw-r--r--. 1 boincer umatlas    557409 Oct  9 06:27 pilot3.tar.gz
[2025-10-11 18:24:58] -rw-r--r--. 1 boincer umatlas      5112 Oct  9 06:40 queuedata.json
[2025-10-11 18:24:58] -rwx------. 1 boincer umatlas     36292 Oct  9 06:40 runpilot2-wrapper.sh
[2025-10-11 18:24:58] -rw-r--r--. 1 boincer umatlas       100 Oct  9 06:44 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-11 18:24:58] -rwxr-xr-x. 1 boincer umatlas      7986 Oct  9 06:44 run_atlas
[2025-10-11 18:24:58] -rw-r--r--. 1 boincer umatlas       105 Oct  9 06:44 job.xml
[2025-10-11 18:24:58] -rw-r--r--. 3 boincer umatlas 220565719 Oct  9 06:44 EVNT.46676267._000488.pool.root.1
[2025-10-11 18:24:58] -rw-r--r--. 3 boincer umatlas 220565719 Oct  9 06:44 ATLAS.root_0
[2025-10-11 18:24:58] -rw-r--r--. 2 boincer umatlas     15120 Oct  9 06:44 start_atlas.sh
[2025-10-11 18:24:58] drwxrwx--x. 2 boincer umatlas      4096 Oct  9 06:44 shared
[2025-10-11 18:24:58] -rw-r--r--. 2 boincer umatlas    569679 Oct  9 06:44 input.tar.gz
[2025-10-11 18:24:58] -rw-r--r--. 1 boincer umatlas         0 Oct  9 06:44 boinc_lockfile
[2025-10-11 18:24:58] -rw-------. 1 boincer umatlas         0 Oct 11 08:01 wrapper_sigint_4100249
[2025-10-11 18:24:58] -rw-------. 1 boincer umatlas         0 Oct 11 08:04 wrapper_sigkill_4100249
[2025-10-11 18:24:58] -rw-r--r--. 1 boincer umatlas      2550 Oct 11 08:27 pandaJob.out
[2025-10-11 18:24:58] -rw-------. 1 boincer umatlas    975504 Oct 11 08:28 agis_schedconf.cvmfs.json
[2025-10-11 18:24:58] -rw-------. 1 boincer umatlas 189958004 Oct 11 18:20 HITS.46676269._012144.pool.root.1
[2025-10-11 18:24:58] -rw-r--r--. 1 boincer umatlas       532 Oct 11 18:20 boinc_task_state.xml
[2025-10-11 18:24:58] -rw-r--r--. 1 boincer umatlas      6658 Oct 11 18:21 init_data.xml
[2025-10-11 18:24:58] -rw-------. 1 boincer umatlas      1052 Oct 11 18:23 memory_monitor_summary.json
[2025-10-11 18:24:58] -rw-------. 1 boincer umatlas   1560580 Oct 11 18:23 agis_ddmendpoints.agis.ALL.json
[2025-10-11 18:24:58] -rw-------. 1 boincer umatlas    755755 Oct 11 18:23 log.46676269._012144.job.log.tgz.1
[2025-10-11 18:24:58] -rw-------. 1 boincer umatlas        97 Oct 11 18:24 pilot_heartbeat.json
[2025-10-11 18:24:58] -rw-------. 1 boincer umatlas      7844 Oct 11 18:24 heartbeat.json
[2025-10-11 18:24:58] -rw-r--r--. 1 boincer umatlas        29 Oct 11 18:24 wrapper_checkpoint.txt
[2025-10-11 18:24:58] -rw-------. 1 boincer umatlas       822 Oct 11 18:24 pilotlog.txt
[2025-10-11 18:24:58] -rw-------. 1 boincer umatlas   3836620 Oct 11 18:24 log.46676269._012144.job.log.1
[2025-10-11 18:24:58] -rw-r--r--. 1 boincer umatlas      8192 Oct 11 18:24 boinc_mmap_file
[2025-10-11 18:24:58] -rw-------. 1 boincer umatlas       357 Oct 11 18:24 output.list
[2025-10-11 18:24:58] -rw-r--r--. 1 boincer umatlas       620 Oct 11 18:24 runtime_log
[2025-10-11 18:24:58] -rw-------. 1 boincer umatlas   4608000 Oct 11 18:24 result.tar.gz
[2025-10-11 18:24:58] -rw-r--r--. 1 boincer umatlas      8776 Oct 11 18:24 runtime_log.err
[2025-10-11 18:24:58] -rw-------. 1 boincer umatlas      1279 Oct 11 18:24 ciVLDmrF3Q8n9Rq4apOajLDm4fhM0noT9bVof3QYDmOLNMDmXO34Dn.diag
[2025-10-11 18:24:58] -rw-r--r--. 1 boincer umatlas     23358 Oct 11 18:24 stderr.txt
[2025-10-11 18:24:58] HITS file was successfully produced:
[2025-10-11 18:24:58] -rw-------. 1 boincer umatlas 189958004 Oct 11 18:20 shared/HITS.pool.root.1
[2025-10-11 18:24:58]  *** Contents of shared directory: ***
[2025-10-11 18:24:58] total 405988
[2025-10-11 18:24:58] -rw-r--r--. 3 boincer umatlas 220565719 Oct  9 06:44 ATLAS.root_0
[2025-10-11 18:24:58] -rw-r--r--. 2 boincer umatlas     15120 Oct  9 06:44 start_atlas.sh
[2025-10-11 18:24:58] -rw-r--r--. 2 boincer umatlas    569679 Oct  9 06:44 input.tar.gz
[2025-10-11 18:24:58] -rw-------. 1 boincer umatlas 189958004 Oct 11 18:20 HITS.pool.root.1
[2025-10-11 18:24:58] -rw-------. 1 boincer umatlas   4608000 Oct 11 18:24 result.tar.gz
18:25:19 (796666): run_atlas exited; CPU time 51182.834018
18:25:19 (796666): called boinc_finish(0)

</stderr_txt>
]]>

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