Stderr output

<core_client_version>8.2.4</core_client_version>
<![CDATA[
<stderr_txt>
13:29:10 (5770): wrapper (7.7.26015): starting
13:29:10 (5770): wrapper: running run_atlas (--nthreads 4)
[2025-10-09 13:29:10] Arguments: --nthreads 4
[2025-10-09 13:29:10] Threads: 4
[2025-10-09 13:29:10] Checking for CVMFS
[2025-10-09 13:29:26] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-09 13:29:36] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-09 13:29:36] Running cvmfs_config stat atlas.cern.ch
[2025-10-09 13:29:37] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-09 13:29:37] 2.13.2.0 5843 0 24760 151511 3 1 3877998 4096001 0 130560 0 0 0.000 1291 83 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
[2025-10-09 13:29:37] CVMFS is ok
[2025-10-09 13:29:37] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-09 13:29:37] Small home clusters do not require a local http proxy but it is suggested if
[2025-10-09 13:29:37] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2025-10-09 13:29:37] Further information can be found at the LHC@home message board.
[2025-10-09 13:29:37] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-09 13:29:37] Checking for apptainer binary...
[2025-10-09 13:29:37] apptainer is not installed, using version from CVMFS
[2025-10-09 13:29:37] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-09 13:29:37] pascal-Intel-Z790-Workstation
[2025-10-09 13:29:37] apptainer works
[2025-10-09 13:29:37] Set ATHENA_PROC_NUMBER=4
[2025-10-09 13:29:37] Set ATHENA_CORE_NUMBER=4
[2025-10-09 13:29:37] Starting ATLAS job with PandaID=6837322408
[2025-10-09 13:29:37] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-09 14:58:32]  *** The last 200 lines of the pilot log: ***
[2025-10-09 14:58:32]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/63/73/log.46676269._011944.job.log.tgz.1
[2025-10-09 14:58:32]  workdir=None
[2025-10-09 14:58:32] ]
[2025-10-09 14:58:32] 2025-10-09 12:57:33,860 | INFO     | transferring file log.46676269._011944.job.log.tgz.1 from /var/lib/boinc/slots/2/PanDA_Pilot-6837322408/log.46676269._011944.job.log.tgz.1 to /var/lib/boinc/slots/
[2025-10-09 14:58:32] 2025-10-09 12:57:33,860 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/slots/2/PanDA_Pilot-6837322408/log.46676269._011944.job.log.tgz.1 /var/lib/boinc/slots/2/log.46676269._011944.job
[2025-10-09 14:58:32] 2025-10-09 12:57:33,872 | INFO     | adding to output.list: log.46676269._011944.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/63/73/log.46676269._011944.job.log.tg
[2025-10-09 14:58:32] 2025-10-09 12:57:33,872 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-09 14:58:32] 2025-10-09 12:57:33,872 | INFO     | summary of transferred files:
[2025-10-09 14:58:32] 2025-10-09 12:57:33,872 | INFO     |  -- lfn=log.46676269._011944.job.log.tgz.1, status_code=0, status=transferred
[2025-10-09 14:58:32] 2025-10-09 12:57:33,872 | INFO     | stage-out finished correctly
[2025-10-09 14:58:32] 2025-10-09 12:57:33,944 | INFO     | time since job start (5234s) is within the limit (172800.0s)
[2025-10-09 14:58:32] 2025-10-09 12:57:34,080 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-09 14:58:32] 2025-10-09 12:57:35,316 | INFO     | monitor loop #398: job 0:6837322408 is in state 'finished'
[2025-10-09 14:58:32] 2025-10-09 12:57:35,316 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-09 14:58:32] 2025-10-09 12:57:35,950 | INFO     | time since job start (5236s) is within the limit (172800.0s)
[2025-10-09 14:58:32] 2025-10-09 12:57:36,628 | INFO     | job 6837322408 has state=finished
[2025-10-09 14:58:32] 2025-10-09 12:57:36,628 | INFO     | preparing for final server update for job 6837322408 in state='finished'
[2025-10-09 14:58:32] 2025-10-09 12:57:36,629 | INFO     | this job has now completed (state=finished)
[2025-10-09 14:58:32] 2025-10-09 12:57:36,629 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-09 14:58:32] 2025-10-09 12:57:36,629 | INFO     | log transfer has been attempted: DONE
[2025-10-09 14:58:32] 2025-10-09 12:57:36,629 | INFO     | job 6837322408 has finished - writing final server update
[2025-10-09 14:58:32] 2025-10-09 12:57:36,629 | INFO     | total number of processed events: 400 (read)
[2025-10-09 14:58:32] 2025-10-09 12:57:36,630 | INFO     | executing command: lscpu
[2025-10-09 14:58:32] 2025-10-09 12:57:36,649 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-09 14:58:32] 2025-10-09 12:57:37,819 | INFO     | monitor loop #399: job 0:6837322408 is in state 'finished'
[2025-10-09 14:58:32] 2025-10-09 12:57:37,819 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-09 14:58:32] 2025-10-09 12:57:37,954 | INFO     | time since job start (5238s) is within the limit (172800.0s)
[2025-10-09 14:58:32] 2025-10-09 12:57:39,078 | INFO     | PID=13823 has CPU usage=4.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-09 14:58:32] 2025-10-09 12:57:39,078 | INFO     | .. there are 2 such processes running
[2025-10-09 14:58:32] 2025-10-09 12:57:40,078 | INFO     | time since job start (5241s) is within the limit (172800.0s)
[2025-10-09 14:58:32] 2025-10-09 12:57:40,322 | INFO     | monitor loop #400: job 0:6837322408 is in state 'finished'
[2025-10-09 14:58:32] 2025-10-09 12:57:40,323 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-09 14:58:32] 2025-10-09 12:57:42,083 | INFO     | time since job start (5243s) is within the limit (172800.0s)
[2025-10-09 14:58:32] 2025-10-09 12:57:42,826 | INFO     | monitor loop #401: job 0:6837322408 is in state 'finished'
[2025-10-09 14:58:32] 2025-10-09 12:57:42,826 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-09 14:58:32] 2025-10-09 12:57:43,975 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-09 14:58:32] 2025-10-09 12:57:43,978 | INFO     | found 24 cores (24 cores per socket, 1 socket) , CPU MHz: 2004.69578125
[2025-10-09 14:58:32] 2025-10-09 12:57:43,981 | INFO     | using path: /var/lib/boinc/slots/2/PanDA_Pilot-6837322408/memory_monitor_summary.json (trf name=prmon)
[2025-10-09 14:58:32] 2025-10-09 12:57:43,982 | INFO     | extracted standard info from prmon json
[2025-10-09 14:58:32] 2025-10-09 12:57:43,982 | INFO     | extracted standard memory fields from prmon json
[2025-10-09 14:58:32] 2025-10-09 12:57:43,982 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-09 14:58:32] 2025-10-09 12:57:43,982 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-09 14:58:32] 2025-10-09 12:57:43,982 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-09 14:58:32] 2025-10-09 12:57:43,983 | INFO     | fitting pss+swap vs Time
[2025-10-09 14:58:32] 2025-10-09 12:57:43,984 | INFO     | sum of square deviations: 152858680.0
[2025-10-09 14:58:32] 2025-10-09 12:57:43,984 | INFO     | sum of deviations: -9362920133.999998
[2025-10-09 14:58:32] 2025-10-09 12:57:43,984 | INFO     | mean x: 1760012122.0
[2025-10-09 14:58:32] 2025-10-09 12:57:43,984 | INFO     | mean y: 2441871.5316455695
[2025-10-09 14:58:32] 2025-10-09 12:57:43,984 | INFO     | -- intersect: 107806937718.00803
[2025-10-09 14:58:32] 2025-10-09 12:57:43,984 | INFO     | intersect: 107806937718.00803
[2025-10-09 14:58:32] 2025-10-09 12:57:43,984 | INFO     | chi2: 0.04226700040035804
[2025-10-09 14:58:32] 2025-10-09 12:57:43,984 | INFO     | -- intersect: 107806937718.00803
[2025-10-09 14:58:32] 2025-10-09 12:57:43,984 | INFO     | current memory leak: -61.25 B/s (using 79 data points, chi2=0.04)
[2025-10-09 14:58:32] 2025-10-09 12:57:43,984 | INFO     | could have reported an average CPU frequency of 2356 MHz (6 samples)
[2025-10-09 14:58:32] 2025-10-09 12:57:43,984 | INFO     | ..............................
[2025-10-09 14:58:32] 2025-10-09 12:57:43,985 | INFO     | . Timing measurements:
[2025-10-09 14:58:32] 2025-10-09 12:57:43,985 | INFO     | . get job = 0 s
[2025-10-09 14:58:32] 2025-10-09 12:57:43,985 | INFO     | . initial setup = 13 s
[2025-10-09 14:58:32] 2025-10-09 12:57:43,985 | INFO     | . payload setup = 3 s
[2025-10-09 14:58:32] 2025-10-09 12:57:43,985 | INFO     | . stage-in = 0 s
[2025-10-09 14:58:32] 2025-10-09 12:57:43,985 | INFO     | . payload execution = 5213 s
[2025-10-09 14:58:32] 2025-10-09 12:57:43,985 | INFO     | . stage-out = 0 s
[2025-10-09 14:58:32] 2025-10-09 12:57:43,985 | INFO     | . log creation = 0 s
[2025-10-09 14:58:32] 2025-10-09 12:57:43,985 | INFO     | ..............................
[2025-10-09 14:58:32] 2025-10-09 12:57:44,022 | INFO     | 
[2025-10-09 14:58:32] 2025-10-09 12:57:44,022 | INFO     | job summary report
[2025-10-09 14:58:32] 2025-10-09 12:57:44,022 | INFO     | --------------------------------------------------
[2025-10-09 14:58:32] 2025-10-09 12:57:44,022 | INFO     | PanDA job id: 6837322408
[2025-10-09 14:58:32] 2025-10-09 12:57:44,022 | INFO     | task id: 46676269
[2025-10-09 14:58:32] 2025-10-09 12:57:44,022 | INFO     | errors: (none)
[2025-10-09 14:58:32] 2025-10-09 12:57:44,022 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-09 14:58:32] 2025-10-09 12:57:44,022 | INFO     | pilot state: finished 
[2025-10-09 14:58:32] 2025-10-09 12:57:44,022 | INFO     | transexitcode: 0
[2025-10-09 14:58:32] 2025-10-09 12:57:44,022 | INFO     | exeerrorcode: 0
[2025-10-09 14:58:32] 2025-10-09 12:57:44,022 | INFO     | exeerrordiag: 
[2025-10-09 14:58:32] 2025-10-09 12:57:44,022 | INFO     | exitcode: 0
[2025-10-09 14:58:32] 2025-10-09 12:57:44,022 | INFO     | exitmsg: OK
[2025-10-09 14:58:32] 2025-10-09 12:57:44,022 | INFO     | cpuconsumptiontime: 19779 s
[2025-10-09 14:58:32] 2025-10-09 12:57:44,022 | INFO     | nevents: 400
[2025-10-09 14:58:32] 2025-10-09 12:57:44,022 | INFO     | neventsw: 0
[2025-10-09 14:58:32] 2025-10-09 12:57:44,023 | INFO     | pid: 27112
[2025-10-09 14:58:32] 2025-10-09 12:57:44,023 | INFO     | pgrp: 27112
[2025-10-09 14:58:32] 2025-10-09 12:57:44,023 | INFO     | corecount: 4
[2025-10-09 14:58:32] 2025-10-09 12:57:44,023 | INFO     | event service: False
[2025-10-09 14:58:32] 2025-10-09 12:57:44,023 | INFO     | sizes: {0: 2348856, 2: 2349118, 11: 2349146, 5220: 2375678, 5222: 2384732, 5232: 2384870}
[2025-10-09 14:58:32] 2025-10-09 12:57:44,023 | INFO     | --------------------------------------------------
[2025-10-09 14:58:32] 2025-10-09 12:57:44,023 | INFO     | 
[2025-10-09 14:58:32] 2025-10-09 12:57:44,023 | INFO     | executing command: ls -lF /var/lib/boinc/slots/2
[2025-10-09 14:58:32] 2025-10-09 12:57:44,035 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-09 14:58:32] 2025-10-09 12:57:44,035 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-09 14:58:32] 2025-10-09 12:57:44,035 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-09 14:58:32] 2025-10-09 12:57:44,035 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-09 14:58:32] 2025-10-09 12:57:44,036 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-09 14:58:32] 2025-10-09 12:57:44,036 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-09 14:58:32] 2025-10-09 12:57:44,036 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-09 14:58:32] 2025-10-09 12:57:44,036 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-09 14:58:32] 2025-10-09 12:57:44,036 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-09 14:58:32] 2025-10-09 12:57:44,036 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-09 14:58:32] 2025-10-09 12:57:44,036 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-09 14:58:32] 2025-10-09 12:57:44,036 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-09 14:58:32] 2025-10-09 12:57:44,036 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-09 14:58:32] 2025-10-09 12:57:44,036 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-09 14:58:32] 2025-10-09 12:57:44,036 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-09 14:58:32] 2025-10-09 12:57:44,036 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-09 14:58:32] 2025-10-09 12:57:44,036 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-09 14:58:32] 2025-10-09 12:57:44,036 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-09 14:58:32] 2025-10-09 12:57:44,036 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-09 14:58:32] 2025-10-09 12:57:44,036 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-09 14:58:32] 2025-10-09 12:57:44,036 | INFO     | job 6837322408 has completed (purged errors)
[2025-10-09 14:58:32] 2025-10-09 12:57:44,037 | INFO     | overall cleanup function is called
[2025-10-09 14:58:32] 2025-10-09 12:57:45,043 | INFO     | --- collectZombieJob: --- 10, [27112]
[2025-10-09 14:58:32] 2025-10-09 12:57:45,043 | INFO     | zombie collector waiting for pid 27112
[2025-10-09 14:58:32] 2025-10-09 12:57:45,043 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-09 14:58:32] 2025-10-09 12:57:45,043 | INFO     | collected zombie processes
[2025-10-09 14:58:32] 2025-10-09 12:57:45,043 | INFO     | will attempt to kill all subprocesses of pid=27112
[2025-10-09 14:58:32] 2025-10-09 12:57:45,089 | INFO     | process IDs to be killed: [27112] (in reverse order)
[2025-10-09 14:58:32] 2025-10-09 12:57:45,123 | WARNING  | found no corresponding commands to process id(s)
[2025-10-09 14:58:32] 2025-10-09 12:57:45,123 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-09 14:58:32] 2025-10-09 12:57:45,125 | INFO     | did not find any defunct processes belonging to 27112
[2025-10-09 14:58:32] 2025-10-09 12:57:45,126 | INFO     | did not find any defunct processes belonging to 27112
[2025-10-09 14:58:32] 2025-10-09 12:57:45,127 | INFO     | ready for new job
[2025-10-09 14:58:32] 2025-10-09 12:57:45,127 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-09 14:58:32] 2025-10-09 12:57:45,127 | INFO     | ***************************************
[2025-10-09 14:58:32] 2025-10-09 12:57:45,127 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-09 14:58:32] 2025-10-09 12:57:45,127 | INFO     | ***************************************
[2025-10-09 14:58:32] 2025-10-09 12:57:45,127 | INFO     | 
[2025-10-09 14:58:32] 2025-10-09 12:57:45,128 | INFO     | architecture information:
[2025-10-09 14:58:32] 2025-10-09 12:57:45,128 | INFO     | executing command: cat /etc/os-release
[2025-10-09 14:58:32] 2025-10-09 12:57:45,136 | INFO     | cat /etc/os-release:
[2025-10-09 14:58:32] NAME="CentOS Linux"
[2025-10-09 14:58:32] VERSION="7 (Core)"
[2025-10-09 14:58:32] ID="centos"
[2025-10-09 14:58:32] ID_LIKE="rhel fedora"
[2025-10-09 14:58:32] VERSION_ID="7"
[2025-10-09 14:58:32] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-09 14:58:32] ANSI_COLOR="0;31"
[2025-10-09 14:58:32] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-09 14:58:32] HOME_URL="https://www.centos.org/"
[2025-10-09 14:58:32] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-09 14:58:32] 
[2025-10-09 14:58:32] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-09 14:58:32] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-09 14:58:32] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-09 14:58:32] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-09 14:58:32] 
[2025-10-09 14:58:32] 2025-10-09 12:57:45,136 | INFO     | ***************************************
[2025-10-09 14:58:32] 2025-10-09 12:57:45,639 | INFO     | executing command: df -mP /var/lib/boinc/slots/2
[2025-10-09 14:58:32] 2025-10-09 12:57:45,649 | INFO     | sufficient remaining disk space (405827223552 B)
[2025-10-09 14:58:32] 2025-10-09 12:57:45,650 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-09 14:58:32] 2025-10-09 12:57:45,650 | INFO     | current server update state: UPDATING_FINAL
[2025-10-09 14:58:32] 2025-10-09 12:57:45,650 | INFO     | update_server=False
[2025-10-09 14:58:32] 2025-10-09 12:57:45,650 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-09 14:58:32] 2025-10-09 12:57:45,650 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-09 14:58:32] 2025-10-09 12:57:45,675 | INFO     | all data control threads have been joined
[2025-10-09 14:58:32] 2025-10-09 12:57:46,334 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-09 14:58:32] 2025-10-09 12:57:46,334 | INFO     | aborting loop
[2025-10-09 14:58:32] 2025-10-09 12:57:46,409 | INFO     | all payload control threads have been joined
[2025-10-09 14:58:32] 2025-10-09 12:57:46,655 | INFO     | [job] queue monitor thread has finished
[2025-10-09 14:58:32] 2025-10-09 12:57:46,655 | INFO     | [job] retrieve thread has finished
[2025-10-09 14:58:32] 2025-10-09 12:57:46,680 | INFO     | [data] control thread has finished
[2025-10-09 14:58:32] 2025-10-09 12:57:46,685 | INFO     | [payload] execute_payloads thread has finished
[2025-10-09 14:58:32] 2025-10-09 12:57:46,837 | INFO     | [payload] failed_post thread has finished
[2025-10-09 14:58:32] 2025-10-09 12:57:46,937 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-09 14:58:32] 2025-10-09 12:57:47,279 | INFO     | [job] validate thread has finished
[2025-10-09 14:58:32] 2025-10-09 12:57:47,320 | INFO     | all job control threads have been joined
[2025-10-09 14:58:32] 2025-10-09 12:57:47,339 | INFO     | [job] job monitor thread has finished
[2025-10-09 14:58:32] 2025-10-09 12:57:47,414 | INFO     | [payload] control thread has finished
[2025-10-09 14:58:32] 2025-10-09 12:57:47,443 | INFO     | [payload] validate_pre thread has finished
[2025-10-09 14:58:32] 2025-10-09 12:57:47,452 | INFO     | [job] create_data_payload thread has finished
[2025-10-09 14:58:32] 2025-10-09 12:57:47,643 | INFO     | [payload] validate_post thread has finished
[2025-10-09 14:58:32] 2025-10-09 12:57:47,943 | INFO     | [data] copytool_in thread has finished
[2025-10-09 14:58:32] 2025-10-09 12:57:48,325 | INFO     | [job] control thread has finished
[2025-10-09 14:58:32] 2025-10-09 12:57:48,942 | INFO     | [data] copytool_out thread has finished
[2025-10-09 14:58:32] 2025-10-09 12:57:49,138 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-09 14:58:32] 2025-10-09 12:57:53,143 | INFO     | [data] queue_monitor thread has finished
[2025-10-09 14:58:32] 2025-10-09 12:57:56,668 | INFO     | job.realtimelogging is not enabled
[2025-10-09 14:58:32] 2025-10-09 12:57:57,673 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-09 14:58:32] 2025-10-09 12:58:15,203 | INFO     | PID=13823 has CPU usage=0.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-09 14:58:32] 2025-10-09 12:58:15,203 | INFO     | .. there are 2 such processes running
[2025-10-09 14:58:32] 2025-10-09 12:58:15,204 | INFO     | found 0 job(s) in 20 queues
[2025-10-09 14:58:32] 2025-10-09 12:58:15,204 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-09 14:58:32] 2025-10-09 12:58:15,204 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-09 14:58:32] 2025-10-09 12:58:26,368 | INFO     | [monitor] cgroup control has ended
[2025-10-09 14:58:32] 2025-10-09 12:58:27,108 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 137626329929536)>', '<ExcThread(monitor, started 137626011014912)>']
[2025-10-09 14:58:32] 2025-10-09 12:58:27,265 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-09 14:58:32] 2025-10-09 12:58:27,265 | INFO     | [monitor] control thread has ended
[2025-10-09 14:58:32] 2025-10-09 12:58:32,120 | INFO     | all workflow threads have been joined
[2025-10-09 14:58:32] 2025-10-09 12:58:32,121 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-09 14:58:32] 2025-10-09 12:58:32,121 | INFO     | traces error code: 0
[2025-10-09 14:58:32] 2025-10-09 12:58:32,121 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-09 14:58:32] 2025-10-09 12:58:32,179 [wrapper] ==== pilot stdout END ====
[2025-10-09 14:58:32] 2025-10-09 12:58:32,180 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-09 14:58:32] 2025-10-09 12:58:32,182 [wrapper] pilotpid: 13823
[2025-10-09 14:58:32] 2025-10-09 12:58:32,183 [wrapper] Pilot exit status: 0
[2025-10-09 14:58:32] 2025-10-09 12:58:32,189 [wrapper] pandaids: 6837322408
[2025-10-09 14:58:32] 2025-10-09 12:58:32,206 [wrapper] cleanup supervisor_pilot   62374 13825
[2025-10-09 14:58:32] 2025-10-09 12:58:32,207 [wrapper] Test setup, not cleaning
[2025-10-09 14:58:32] 2025-10-09 12:58:32,209 [wrapper] apfmon messages muted
[2025-10-09 14:58:32] 2025-10-09 12:58:32,210 [wrapper] ==== wrapper stdout END ====
[2025-10-09 14:58:32] 2025-10-09 12:58:32,211 [wrapper] ==== wrapper stderr END ====
[2025-10-09 14:58:32]  *** Error codes and diagnostics ***
[2025-10-09 14:58:32]     "exeErrorCode": 0,
[2025-10-09 14:58:32]     "exeErrorDiag": "",
[2025-10-09 14:58:32]     "pilotErrorCode": 0,
[2025-10-09 14:58:32]     "pilotErrorDiag": "",
[2025-10-09 14:58:32]  *** Listing of results directory ***
[2025-10-09 14:58:32] total 412516
[2025-10-09 14:58:32] -rw-r--r-- 1 boinc boinc    557409 oct.   9 12:27 pilot3.tar.gz
[2025-10-09 14:58:32] -rwx------ 1 boinc boinc     36292 oct.   9 12:40 runpilot2-wrapper.sh
[2025-10-09 14:58:32] -rw-r--r-- 1 boinc boinc      5112 oct.   9 12:40 queuedata.json
[2025-10-09 14:58:32] -rw-r--r-- 1 boinc boinc       100 oct.   9 13:29 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-09 14:58:32] -rwxr-xr-x 1 boinc boinc      7986 oct.   9 13:29 run_atlas
[2025-10-09 14:58:32] -rw-r--r-- 1 boinc boinc       105 oct.   9 13:29 job.xml
[2025-10-09 14:58:32] -rw-r--r-- 2 boinc boinc 221067023 oct.   9 13:29 EVNT.46676267._000480.pool.root.1
[2025-10-09 14:58:32] drwxrwx--x 2 boinc boinc      4096 oct.   9 13:29 shared
[2025-10-09 14:58:32] -rw-r--r-- 2 boinc boinc    569680 oct.   9 13:29 input.tar.gz
[2025-10-09 14:58:32] -rw-r--r-- 2 boinc boinc     15120 oct.   9 13:29 start_atlas.sh
[2025-10-09 14:58:32] -rw-r--r-- 1 boinc boinc         0 oct.   9 13:29 boinc_setup_complete
[2025-10-09 14:58:32] -rw-r--r-- 1 boinc boinc         0 oct.   9 13:29 boinc_lockfile
[2025-10-09 14:58:32] -rw-r--r-- 1 boinc boinc      2550 oct.   9 13:29 pandaJob.out
[2025-10-09 14:58:32] -rw------- 1 boinc boinc    975446 oct.   9 13:30 agis_schedconf.cvmfs.json
[2025-10-09 14:58:32] -rw------- 1 boinc boinc   1560401 oct.   9 13:30 agis_ddmendpoints.agis.ALL.json
[2025-10-09 14:58:32] drwx------ 5 boinc boinc      4096 oct.   9 13:30 pilot3
[2025-10-09 14:58:32] -rw-r--r-- 1 boinc boinc      9434 oct.   9 14:56 init_data.xml
[2025-10-09 14:58:32] -rw------- 1 boinc boinc 195336080 oct.   9 14:57 HITS.46676269._011944.pool.root.1
[2025-10-09 14:58:32] -rw-r--r-- 1 boinc boinc       529 oct.   9 14:57 boinc_task_state.xml
[2025-10-09 14:58:32] -rw------- 1 boinc boinc      1012 oct.   9 14:57 memory_monitor_summary.json
[2025-10-09 14:58:32] -rw------- 1 boinc boinc    279684 oct.   9 14:57 log.46676269._011944.job.log.tgz.1
[2025-10-09 14:58:32] -rw------- 1 boinc boinc      7772 oct.   9 14:57 heartbeat.json
[2025-10-09 14:58:32] -rw------- 1 boinc boinc        95 oct.   9 14:58 pilot_heartbeat.json
[2025-10-09 14:58:32] -rw-r--r-- 1 boinc boinc        27 oct.   9 14:58 wrapper_checkpoint.txt
[2025-10-09 14:58:32] -rw-r--r-- 1 boinc boinc      8192 oct.   9 14:58 boinc_mmap_file
[2025-10-09 14:58:32] -rw------- 1 boinc boinc      4894 oct.   9 14:58 pilotlog.txt
[2025-10-09 14:58:32] -rw------- 1 boinc boinc    773290 oct.   9 14:58 log.46676269._011944.job.log.1
[2025-10-09 14:58:32] -rw------- 1 boinc boinc       357 oct.   9 14:58 output.list
[2025-10-09 14:58:32] -rw-r--r-- 1 boinc boinc       620 oct.   9 14:58 runtime_log
[2025-10-09 14:58:32] -rw------- 1 boinc boinc   1075200 oct.   9 14:58 result.tar.gz
[2025-10-09 14:58:32] -rw-r--r-- 1 boinc boinc      8761 oct.   9 14:58 runtime_log.err
[2025-10-09 14:58:32] -rw------- 1 boinc boinc       661 oct.   9 14:58 PhYNDmeF3Q8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmy2YNDmMAA2Xo.diag
[2025-10-09 14:58:32] -rw-r--r-- 1 boinc boinc     22369 oct.   9 14:58 stderr.txt
[2025-10-09 14:58:32] HITS file was successfully produced:
[2025-10-09 14:58:32] -rw------- 1 boinc boinc 195336080 oct.   9 14:57 shared/HITS.pool.root.1
[2025-10-09 14:58:32]  *** Contents of shared directory: ***
[2025-10-09 14:58:32] total 408280
[2025-10-09 14:58:32] -rw-r--r-- 2 boinc boinc 221067023 oct.   9 13:29 ATLAS.root_0
[2025-10-09 14:58:32] -rw-r--r-- 2 boinc boinc    569680 oct.   9 13:29 input.tar.gz
[2025-10-09 14:58:32] -rw-r--r-- 2 boinc boinc     15120 oct.   9 13:29 start_atlas.sh
[2025-10-09 14:58:32] -rw------- 1 boinc boinc 195336080 oct.   9 14:57 HITS.pool.root.1
[2025-10-09 14:58:32] -rw------- 1 boinc boinc   1075200 oct.   9 14:58 result.tar.gz
14:58:34 (5770): run_atlas exited; CPU time 19849.564355
14:58:34 (5770): called boinc_finish(0)

</stderr_txt>
]]>

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