Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
04:04:48 (3293823): wrapper (7.7.26015): starting
04:04:48 (3293823): wrapper: running run_atlas (--nthreads 9)
[2025-10-09 04:04:48] Arguments: --nthreads 9
[2025-10-09 04:04:48] Threads: 9
[2025-10-09 04:04:48] Checking for CVMFS
[2025-10-09 04:04:48] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-09 04:04:49] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-09 04:04:49] Running cvmfs_config stat atlas.cern.ch
[2025-10-09 04:04:49] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-09 04:04:49] 2.13.2.0 5045 1096 102052 151503 1 51 26364409 40960001 19592 16776704 0 3758255 99.862 770550 38414 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-09 04:04:49] CVMFS is ok
[2025-10-09 04:04:49] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-09 04:04:49] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-09 04:04:49] Further information can be found at the LHC@home message board.
[2025-10-09 04:04:49] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-09 04:04:49] Checking for apptainer binary...
[2025-10-09 04:04:49] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-09 04:04:49] Running /usr/bin/apptainer --version
[2025-10-09 04:04:49] apptainer version 1.4.2-1.el9
[2025-10-09 04:04:49] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-09 04:04:49] c-212-11.aglt2.org
[2025-10-09 04:04:49] apptainer works
[2025-10-09 04:04:49] Set ATHENA_PROC_NUMBER=9
[2025-10-09 04:04:49] Set ATHENA_CORE_NUMBER=9
[2025-10-09 04:04:49] Starting ATLAS job with PandaID=6836603205
[2025-10-09 04:04:49] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-09 05:46:21]  *** The last 200 lines of the pilot log: ***
[2025-10-09 05:46:21]  status=None
[2025-10-09 05:46:21]  status_code=0
[2025-10-09 05:46:21]  storage_token=
[2025-10-09 05:46:21]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6836603205/log.46676269._009475.job.log.tgz.1
[2025-10-09 05:46:21]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/c2/a5/log.46676269._009475.job.log.tgz.1
[2025-10-09 05:46:21]  workdir=None
[2025-10-09 05:46:21] ]
[2025-10-09 05:46:21] 2025-10-09 09:45:31,675 | INFO     | transferring file log.46676269._009475.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6836603205/log.46676269._009475.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-10-09 05:46:21] 2025-10-09 09:45:31,675 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6836603205/log.46676269._009475.job.log.tgz.1 /tmp/boinchome/slots/0/log.46676269._009475.job
[2025-10-09 05:46:21] 2025-10-09 09:45:31,697 | INFO     | adding to output.list: log.46676269._009475.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/c2/a5/log.46676269._009475.job.log.tg
[2025-10-09 05:46:21] 2025-10-09 09:45:31,698 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-09 05:46:21] 2025-10-09 09:45:31,698 | INFO     | summary of transferred files:
[2025-10-09 05:46:21] 2025-10-09 09:45:31,698 | INFO     |  -- lfn=log.46676269._009475.job.log.tgz.1, status_code=0, status=transferred
[2025-10-09 05:46:21] 2025-10-09 09:45:31,698 | INFO     | stage-out finished correctly
[2025-10-09 05:46:21] 2025-10-09 09:45:32,025 | WARNING  | process 3304097 can no longer be monitored (due to stat problems) - aborting
[2025-10-09 05:46:21] 2025-10-09 09:45:32,025 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6836603205/memory_monitor_summary.json (trf name=prmon)
[2025-10-09 05:46:21] 2025-10-09 09:45:32,328 | INFO     | number of running child processes to parent process 3304097: 1
[2025-10-09 05:46:21] 2025-10-09 09:45:32,329 | INFO     | maximum number of monitored processes: 6
[2025-10-09 05:46:21] 2025-10-09 09:45:33,407 | INFO     | time since job start (6028s) is within the limit (172800.0s)
[2025-10-09 05:46:21] 2025-10-09 09:45:33,654 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-09 05:46:21] 2025-10-09 09:45:33,723 | INFO     | job 6836603205 has state=finished
[2025-10-09 05:46:21] 2025-10-09 09:45:33,724 | INFO     | preparing for final server update for job 6836603205 in state='finished'
[2025-10-09 05:46:21] 2025-10-09 09:45:33,724 | INFO     | this job has now completed (state=finished)
[2025-10-09 05:46:21] 2025-10-09 09:45:33,724 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-09 05:46:21] 2025-10-09 09:45:33,724 | INFO     | log transfer has been attempted: DONE
[2025-10-09 05:46:21] 2025-10-09 09:45:33,724 | INFO     | job 6836603205 has finished - writing final server update
[2025-10-09 05:46:21] 2025-10-09 09:45:33,725 | INFO     | total number of processed events: 400 (read)
[2025-10-09 05:46:21] 2025-10-09 09:45:33,725 | INFO     | executing command: lscpu
[2025-10-09 05:46:21] 2025-10-09 09:45:33,794 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-09 05:46:21] 2025-10-09 09:45:34,835 | INFO     | monitor loop #428: job 0:6836603205 is in state 'finished'
[2025-10-09 05:46:21] 2025-10-09 09:45:34,836 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-09 05:46:21] 2025-10-09 09:45:35,413 | INFO     | time since job start (6030s) is within the limit (172800.0s)
[2025-10-09 05:46:21] 2025-10-09 09:45:37,338 | INFO     | monitor loop #429: job 0:6836603205 is in state 'finished'
[2025-10-09 05:46:21] 2025-10-09 09:45:37,339 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-09 05:46:21] 2025-10-09 09:45:37,419 | INFO     | time since job start (6032s) is within the limit (172800.0s)
[2025-10-09 05:46:21] 2025-10-09 09:45:37,989 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-09 05:46:21] 2025-10-09 09:45:37,994 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 3048.257364583334
[2025-10-09 05:46:21] 2025-10-09 09:45:38,010 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6836603205/memory_monitor_summary.json (trf name=prmon)
[2025-10-09 05:46:21] 2025-10-09 09:45:38,011 | INFO     | extracted standard info from prmon json
[2025-10-09 05:46:21] 2025-10-09 09:45:38,011 | INFO     | extracted standard memory fields from prmon json
[2025-10-09 05:46:21] 2025-10-09 09:45:38,011 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-09 05:46:21] 2025-10-09 09:45:38,011 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-09 05:46:21] 2025-10-09 09:45:38,011 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-09 05:46:21] 2025-10-09 09:45:38,013 | INFO     | fitting pss+swap vs Time
[2025-10-09 05:46:21] 2025-10-09 09:45:38,014 | INFO     | sum of square deviations: 241429643.0
[2025-10-09 05:46:21] 2025-10-09 09:45:38,014 | INFO     | sum of deviations: 99789869.5000001
[2025-10-09 05:46:21] 2025-10-09 09:45:38,014 | INFO     | mean x: 1760000221.5
[2025-10-09 05:46:21] 2025-10-09 09:45:38,014 | INFO     | mean y: 2595143.902173913
[2025-10-09 05:46:21] 2025-10-09 09:45:38,014 | INFO     | -- intersect: -724863962.7803319
[2025-10-09 05:46:21] 2025-10-09 09:45:38,014 | INFO     | intersect: -724863962.7803319
[2025-10-09 05:46:21] 2025-10-09 09:45:38,015 | INFO     | chi2: 0.008164187404706728
[2025-10-09 05:46:21] 2025-10-09 09:45:38,015 | INFO     | -- intersect: -724863962.7803319
[2025-10-09 05:46:21] 2025-10-09 09:45:38,015 | INFO     | current memory leak: 0.41 B/s (using 92 data points, chi2=0.01)
[2025-10-09 05:46:21] 2025-10-09 09:45:38,015 | INFO     | could have reported an average CPU frequency of 2992 MHz (7 samples)
[2025-10-09 05:46:21] 2025-10-09 09:45:38,015 | INFO     | ..............................
[2025-10-09 05:46:21] 2025-10-09 09:45:38,015 | INFO     | . Timing measurements:
[2025-10-09 05:46:21] 2025-10-09 09:45:38,015 | INFO     | . get job = 0 s
[2025-10-09 05:46:21] 2025-10-09 09:45:38,015 | INFO     | . initial setup = 2 s
[2025-10-09 05:46:21] 2025-10-09 09:45:38,015 | INFO     | . payload setup = 10 s
[2025-10-09 05:46:21] 2025-10-09 09:45:38,015 | INFO     | . stage-in = 0 s
[2025-10-09 05:46:21] 2025-10-09 09:45:38,015 | INFO     | . payload execution = 5992 s
[2025-10-09 05:46:21] 2025-10-09 09:45:38,016 | INFO     | . stage-out = 0 s
[2025-10-09 05:46:21] 2025-10-09 09:45:38,016 | INFO     | . log creation = 0 s
[2025-10-09 05:46:21] 2025-10-09 09:45:38,016 | INFO     | ..............................
[2025-10-09 05:46:21] 2025-10-09 09:45:38,430 | INFO     | 
[2025-10-09 05:46:21] 2025-10-09 09:45:38,430 | INFO     | job summary report
[2025-10-09 05:46:21] 2025-10-09 09:45:38,430 | INFO     | --------------------------------------------------
[2025-10-09 05:46:21] 2025-10-09 09:45:38,431 | INFO     | PanDA job id: 6836603205
[2025-10-09 05:46:21] 2025-10-09 09:45:38,431 | INFO     | task id: 46676269
[2025-10-09 05:46:21] 2025-10-09 09:45:38,431 | INFO     | errors: (none)
[2025-10-09 05:46:21] 2025-10-09 09:45:38,431 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-09 05:46:21] 2025-10-09 09:45:38,431 | INFO     | pilot state: finished 
[2025-10-09 05:46:21] 2025-10-09 09:45:38,431 | INFO     | transexitcode: 0
[2025-10-09 05:46:21] 2025-10-09 09:45:38,431 | INFO     | exeerrorcode: 0
[2025-10-09 05:46:21] 2025-10-09 09:45:38,431 | INFO     | exeerrordiag: 
[2025-10-09 05:46:21] 2025-10-09 09:45:38,431 | INFO     | exitcode: 0
[2025-10-09 05:46:21] 2025-10-09 09:45:38,431 | INFO     | exitmsg: OK
[2025-10-09 05:46:21] 2025-10-09 09:45:38,431 | INFO     | cpuconsumptiontime: 33757 s
[2025-10-09 05:46:21] 2025-10-09 09:45:38,431 | INFO     | nevents: 400
[2025-10-09 05:46:21] 2025-10-09 09:45:38,431 | INFO     | neventsw: 0
[2025-10-09 05:46:21] 2025-10-09 09:45:38,432 | INFO     | pid: 3304097
[2025-10-09 05:46:21] 2025-10-09 09:45:38,432 | INFO     | pgrp: 3304097
[2025-10-09 05:46:21] 2025-10-09 09:45:38,432 | INFO     | corecount: 9
[2025-10-09 05:46:21] 2025-10-09 09:45:38,432 | INFO     | event service: False
[2025-10-09 05:46:21] 2025-10-09 09:45:38,432 | INFO     | sizes: {0: 2348852, 1: 2348852, 8: 2349142, 11: 2349170, 6006: 2375876, 6007: 2375875, 6009: 2385057, 6011: 2385113, 6015: 2385307}
[2025-10-09 05:46:21] 2025-10-09 09:45:38,432 | INFO     | --------------------------------------------------
[2025-10-09 05:46:21] 2025-10-09 09:45:38,432 | INFO     | 
[2025-10-09 05:46:21] 2025-10-09 09:45:38,432 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-10-09 05:46:21] 2025-10-09 09:45:38,466 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-09 05:46:21] 2025-10-09 09:45:38,466 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-09 05:46:21] 2025-10-09 09:45:38,466 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-09 05:46:21] 2025-10-09 09:45:38,467 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-09 05:46:21] 2025-10-09 09:45:38,467 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-09 05:46:21] 2025-10-09 09:45:38,467 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-09 05:46:21] 2025-10-09 09:45:38,467 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-09 05:46:21] 2025-10-09 09:45:38,467 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-09 05:46:21] 2025-10-09 09:45:38,467 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-09 05:46:21] 2025-10-09 09:45:38,467 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-09 05:46:21] 2025-10-09 09:45:38,467 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-09 05:46:21] 2025-10-09 09:45:38,467 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-09 05:46:21] 2025-10-09 09:45:38,467 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-09 05:46:21] 2025-10-09 09:45:38,467 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-09 05:46:21] 2025-10-09 09:45:38,467 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-09 05:46:21] 2025-10-09 09:45:38,467 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-09 05:46:21] 2025-10-09 09:45:38,467 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-09 05:46:21] 2025-10-09 09:45:38,468 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-09 05:46:21] 2025-10-09 09:45:38,468 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-09 05:46:21] 2025-10-09 09:45:38,468 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-09 05:46:21] 2025-10-09 09:45:38,468 | INFO     | job 6836603205 has completed (purged errors)
[2025-10-09 05:46:21] 2025-10-09 09:45:38,468 | INFO     | overall cleanup function is called
[2025-10-09 05:46:21] 2025-10-09 09:45:39,476 | INFO     | --- collectZombieJob: --- 10, [3304097]
[2025-10-09 05:46:21] 2025-10-09 09:45:39,477 | INFO     | zombie collector waiting for pid 3304097
[2025-10-09 05:46:21] 2025-10-09 09:45:39,477 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-09 05:46:21] 2025-10-09 09:45:39,477 | INFO     | collected zombie processes
[2025-10-09 05:46:21] 2025-10-09 09:45:39,477 | INFO     | will attempt to kill all subprocesses of pid=3304097
[2025-10-09 05:46:21] 2025-10-09 09:45:39,806 | INFO     | process IDs to be killed: [3304097] (in reverse order)
[2025-10-09 05:46:21] 2025-10-09 09:45:39,917 | WARNING  | found no corresponding commands to process id(s)
[2025-10-09 05:46:21] 2025-10-09 09:45:39,917 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-09 05:46:21] 2025-10-09 09:45:39,932 | INFO     | did not find any defunct processes belonging to 3304097
[2025-10-09 05:46:21] 2025-10-09 09:45:39,946 | INFO     | did not find any defunct processes belonging to 3304097
[2025-10-09 05:46:21] 2025-10-09 09:45:39,947 | INFO     | ready for new job
[2025-10-09 05:46:21] 2025-10-09 09:45:39,947 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-09 05:46:21] 2025-10-09 09:45:39,948 | INFO     | ***************************************
[2025-10-09 05:46:21] 2025-10-09 09:45:39,949 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-09 05:46:21] 2025-10-09 09:45:39,949 | INFO     | ***************************************
[2025-10-09 05:46:21] 2025-10-09 09:45:39,949 | INFO     | 
[2025-10-09 05:46:21] 2025-10-09 09:45:39,954 | INFO     | architecture information:
[2025-10-09 05:46:21] 2025-10-09 09:45:39,954 | INFO     | executing command: cat /etc/os-release
[2025-10-09 05:46:21] 2025-10-09 09:45:39,972 | INFO     | cat /etc/os-release:
[2025-10-09 05:46:21] NAME="CentOS Linux"
[2025-10-09 05:46:21] VERSION="7 (Core)"
[2025-10-09 05:46:21] ID="centos"
[2025-10-09 05:46:21] ID_LIKE="rhel fedora"
[2025-10-09 05:46:21] VERSION_ID="7"
[2025-10-09 05:46:21] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-09 05:46:21] ANSI_COLOR="0;31"
[2025-10-09 05:46:21] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-09 05:46:21] HOME_URL="https://www.centos.org/"
[2025-10-09 05:46:21] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-09 05:46:21] 
[2025-10-09 05:46:21] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-09 05:46:21] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-09 05:46:21] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-09 05:46:21] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-09 05:46:21] 
[2025-10-09 05:46:21] 2025-10-09 09:45:39,972 | INFO     | ***************************************
[2025-10-09 05:46:21] 2025-10-09 09:45:40,474 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-10-09 05:46:21] 2025-10-09 09:45:40,486 | INFO     | sufficient remaining disk space (129401618432 B)
[2025-10-09 05:46:21] 2025-10-09 09:45:40,486 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-09 05:46:21] 2025-10-09 09:45:40,486 | INFO     | current server update state: UPDATING_FINAL
[2025-10-09 05:46:21] 2025-10-09 09:45:40,486 | INFO     | update_server=False
[2025-10-09 05:46:21] 2025-10-09 09:45:40,486 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-09 05:46:21] 2025-10-09 09:45:40,486 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-09 05:46:21] 2025-10-09 09:45:40,486 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-09 05:46:21] 2025-10-09 09:45:40,846 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-09 05:46:21] 2025-10-09 09:45:40,846 | INFO     | aborting loop
[2025-10-09 05:46:21] 2025-10-09 09:45:40,868 | INFO     | all payload control threads have been joined
[2025-10-09 05:46:21] 2025-10-09 09:45:41,367 | INFO     | all data control threads have been joined
[2025-10-09 05:46:21] 2025-10-09 09:45:41,491 | INFO     | [job] retrieve thread has finished
[2025-10-09 05:46:21] 2025-10-09 09:45:41,641 | INFO     | all job control threads have been joined
[2025-10-09 05:46:21] 2025-10-09 09:45:41,851 | INFO     | [job] job monitor thread has finished
[2025-10-09 05:46:21] 2025-10-09 09:45:41,873 | INFO     | [payload] control thread has finished
[2025-10-09 05:46:21] 2025-10-09 09:45:42,156 | INFO     | [data] copytool_in thread has finished
[2025-10-09 05:46:21] 2025-10-09 09:45:42,244 | INFO     | [payload] validate_post thread has finished
[2025-10-09 05:46:21] 2025-10-09 09:45:42,373 | INFO     | [data] control thread has finished
[2025-10-09 05:46:21] 2025-10-09 09:45:42,497 | INFO     | [data] copytool_out thread has finished
[2025-10-09 05:46:21] 2025-10-09 09:45:42,516 | INFO     | [payload] execute_payloads thread has finished
[2025-10-09 05:46:21] 2025-10-09 09:45:42,647 | INFO     | [job] control thread has finished
[2025-10-09 05:46:21] 2025-10-09 09:45:42,671 | INFO     | [payload] validate_pre thread has finished
[2025-10-09 05:46:21] 2025-10-09 09:45:42,684 | INFO     | [job] validate thread has finished
[2025-10-09 05:46:21] 2025-10-09 09:45:42,710 | INFO     | [job] create_data_payload thread has finished
[2025-10-09 05:46:21] 2025-10-09 09:45:42,949 | INFO     | [payload] failed_post thread has finished
[2025-10-09 05:46:21] 2025-10-09 09:45:43,103 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-09 05:46:21] 2025-10-09 09:45:44,108 | INFO     | [job] queue monitor thread has finished
[2025-10-09 05:46:21] 2025-10-09 09:45:44,496 | INFO     | [data] queue_monitor thread has finished
[2025-10-09 05:46:21] 2025-10-09 09:45:51,009 | INFO     | job.realtimelogging is not enabled
[2025-10-09 05:46:21] 2025-10-09 09:45:52,014 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-09 05:46:21] 2025-10-09 09:46:10,899 | INFO     | PID=3297516 has CPU usage=5.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-09 05:46:21] 2025-10-09 09:46:10,899 | INFO     | .. there are 13 such processes running
[2025-10-09 05:46:21] 2025-10-09 09:46:10,900 | INFO     | found 0 job(s) in 20 queues
[2025-10-09 05:46:21] 2025-10-09 09:46:10,900 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-09 05:46:21] 2025-10-09 09:46:10,900 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-09 05:46:21] 2025-10-09 09:46:15,486 | INFO     | [monitor] cgroup control has ended
[2025-10-09 05:46:21] 2025-10-09 09:46:16,135 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140422300866368)>', '<ExcThread(monitor, started 140422028433152)>']
[2025-10-09 05:46:21] 2025-10-09 09:46:16,931 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-09 05:46:21] 2025-10-09 09:46:16,931 | INFO     | [monitor] control thread has ended
[2025-10-09 05:46:21] 2025-10-09 09:46:21,160 | INFO     | all workflow threads have been joined
[2025-10-09 05:46:21] 2025-10-09 09:46:21,160 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-09 05:46:21] 2025-10-09 09:46:21,161 | INFO     | traces error code: 0
[2025-10-09 05:46:21] 2025-10-09 09:46:21,161 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-09 05:46:21] 2025-10-09 09:46:21,289 [wrapper] ==== pilot stdout END ====
[2025-10-09 05:46:21] 2025-10-09 09:46:21,292 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-09 05:46:21] 2025-10-09 09:46:21,295 [wrapper] pilotpid: 3297516
[2025-10-09 05:46:21] 2025-10-09 09:46:21,299 [wrapper] Pilot exit status: 0
[2025-10-09 05:46:21] 2025-10-09 09:46:21,313 [wrapper] pandaids: 6836603205
[2025-10-09 05:46:21] 2025-10-09 09:46:21,391 [wrapper] cleanup supervisor_pilot 3495145 3297517
[2025-10-09 05:46:21] 2025-10-09 09:46:21,393 [wrapper] Test setup, not cleaning
[2025-10-09 05:46:21] 2025-10-09 09:46:21,395 [wrapper] apfmon messages muted
[2025-10-09 05:46:21] 2025-10-09 09:46:21,397 [wrapper] ==== wrapper stdout END ====
[2025-10-09 05:46:21] 2025-10-09 09:46:21,399 [wrapper] ==== wrapper stderr END ====
[2025-10-09 05:46:21]  *** Error codes and diagnostics ***
[2025-10-09 05:46:21]     "exeErrorCode": 0,
[2025-10-09 05:46:21]     "exeErrorDiag": "",
[2025-10-09 05:46:21]     "pilotErrorCode": 0,
[2025-10-09 05:46:21]     "pilotErrorDiag": "",
[2025-10-09 05:46:21]  *** Listing of results directory ***
[2025-10-09 05:46:21] total 403368
[2025-10-09 05:46:21] -rw-r--r--. 1 boincer umatlas    557409 Oct  8 18:57 pilot3.tar.gz
[2025-10-09 05:46:21] -rwx------. 1 boincer umatlas     36292 Oct  8 19:03 runpilot2-wrapper.sh
[2025-10-09 05:46:21] -rw-r--r--. 1 boincer umatlas      5112 Oct  8 19:05 queuedata.json
[2025-10-09 05:46:21] -rw-r--r--. 1 boincer umatlas       100 Oct  9 04:04 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-09 05:46:21] -rwxr-xr-x. 1 boincer umatlas      7986 Oct  9 04:04 run_atlas
[2025-10-09 05:46:21] -rw-r--r--. 1 boincer umatlas       105 Oct  9 04:04 job.xml
[2025-10-09 05:46:21] -rw-r--r--. 2 boincer umatlas 217402426 Oct  9 04:04 EVNT.46676267._000383.pool.root.1
[2025-10-09 05:46:21] -rw-r--r--. 2 boincer umatlas     15120 Oct  9 04:04 start_atlas.sh
[2025-10-09 05:46:21] drwxrwx--x. 2 boincer umatlas      4096 Oct  9 04:04 shared
[2025-10-09 05:46:21] -rw-r--r--. 2 boincer umatlas    569680 Oct  9 04:04 input.tar.gz
[2025-10-09 05:46:21] -rw-r--r--. 1 boincer umatlas         0 Oct  9 04:04 boinc_lockfile
[2025-10-09 05:46:21] -rw-r--r--. 1 boincer umatlas      2548 Oct  9 04:04 pandaJob.out
[2025-10-09 05:46:21] -rw-------. 1 boincer umatlas    979274 Oct  9 04:05 agis_schedconf.cvmfs.json
[2025-10-09 05:46:21] -rw-------. 1 boincer umatlas   1560401 Oct  9 04:05 agis_ddmendpoints.agis.ALL.json
[2025-10-09 05:46:21] drwx------. 5 boincer umatlas      4096 Oct  9 04:05 pilot3
[2025-10-09 05:46:21] -rw-------. 1 boincer umatlas 189317795 Oct  9 05:45 HITS.46676269._009475.pool.root.1
[2025-10-09 05:46:21] -rw-r--r--. 1 boincer umatlas       529 Oct  9 05:45 boinc_task_state.xml
[2025-10-09 05:46:21] -rw-------. 1 boincer umatlas      1037 Oct  9 05:45 memory_monitor_summary.json
[2025-10-09 05:46:21] -rw-------. 1 boincer umatlas    354278 Oct  9 05:45 log.46676269._009475.job.log.tgz.1
[2025-10-09 05:46:21] -rw-r--r--. 1 boincer umatlas      6946 Oct  9 05:45 init_data.xml
[2025-10-09 05:46:21] -rw-------. 1 boincer umatlas      7771 Oct  9 05:45 heartbeat.json
[2025-10-09 05:46:21] -rw-------. 1 boincer umatlas        95 Oct  9 05:46 pilot_heartbeat.json
[2025-10-09 05:46:21] -rw-r--r--. 1 boincer umatlas        27 Oct  9 05:46 wrapper_checkpoint.txt
[2025-10-09 05:46:21] -rw-r--r--. 1 boincer umatlas      8192 Oct  9 05:46 boinc_mmap_file
[2025-10-09 05:46:21] -rw-------. 1 boincer umatlas      4897 Oct  9 05:46 pilotlog.txt
[2025-10-09 05:46:21] -rw-------. 1 boincer umatlas    856887 Oct  9 05:46 log.46676269._009475.job.log.1
[2025-10-09 05:46:21] -rw-------. 1 boincer umatlas       357 Oct  9 05:46 output.list
[2025-10-09 05:46:21] -rw-r--r--. 1 boincer umatlas       620 Oct  9 05:46 runtime_log
[2025-10-09 05:46:21] -rw-------. 1 boincer umatlas   1228800 Oct  9 05:46 result.tar.gz
[2025-10-09 05:46:21] -rw-------. 1 boincer umatlas       653 Oct  9 05:46 Xz5MDmmMsQ8n9Rq4apOajLDm4fhM0noT9bVof3QYDm73MMDmndGFTo.diag
[2025-10-09 05:46:21] -rw-r--r--. 1 boincer umatlas      8703 Oct  9 05:46 runtime_log.err
[2025-10-09 05:46:21] -rw-r--r--. 1 boincer umatlas     22033 Oct  9 05:46 stderr.txt
[2025-10-09 05:46:21] HITS file was successfully produced:
[2025-10-09 05:46:21] -rw-------. 1 boincer umatlas 189317795 Oct  9 05:45 shared/HITS.pool.root.1
[2025-10-09 05:46:21]  *** Contents of shared directory: ***
[2025-10-09 05:46:21] total 398976
[2025-10-09 05:46:21] -rw-r--r--. 2 boincer umatlas 217402426 Oct  9 04:04 ATLAS.root_0
[2025-10-09 05:46:21] -rw-r--r--. 2 boincer umatlas     15120 Oct  9 04:04 start_atlas.sh
[2025-10-09 05:46:21] -rw-r--r--. 2 boincer umatlas    569680 Oct  9 04:04 input.tar.gz
[2025-10-09 05:46:21] -rw-------. 1 boincer umatlas 189317795 Oct  9 05:45 HITS.pool.root.1
[2025-10-09 05:46:21] -rw-------. 1 boincer umatlas   1228800 Oct  9 05:46 result.tar.gz
05:46:23 (3293823): run_atlas exited; CPU time 33876.180241
05:46:23 (3293823): called boinc_finish(0)

</stderr_txt>
]]>

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