Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
02:29:43 (3923363): wrapper (7.7.26015): starting
02:29:43 (3923363): wrapper: running run_atlas (--nthreads 10)
[2025-10-09 02:29:43] Arguments: --nthreads 10
[2025-10-09 02:29:43] Threads: 10
[2025-10-09 02:29:43] Checking for CVMFS
[2025-10-09 02:29:44] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-09 02:29:44] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-09 02:29:44] Running cvmfs_config stat atlas.cern.ch
[2025-10-09 02:29:44] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-09 02:29:44] 2.13.2.0 5034 1001 116012 151497 0 561 23879971 40960000 23543 16776704 0 4815174 99.787 2732749 34036 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-09 02:29:44] CVMFS is ok
[2025-10-09 02:29:44] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-09 02:29:44] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-09 02:29:44] Further information can be found at the LHC@home message board.
[2025-10-09 02:29:44] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-09 02:29:44] Checking for apptainer binary...
[2025-10-09 02:29:44] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-09 02:29:44] Running /usr/bin/apptainer --version
[2025-10-09 02:29:44] apptainer version 1.4.2-1.el9
[2025-10-09 02:29:44] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-09 02:29:44] c-212-9.aglt2.org
[2025-10-09 02:29:44] apptainer works
[2025-10-09 02:29:44] Set ATHENA_PROC_NUMBER=10
[2025-10-09 02:29:44] Set ATHENA_CORE_NUMBER=10
[2025-10-09 02:29:44] Starting ATLAS job with PandaID=6835974871
[2025-10-09 02:29:44] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-09 04:08:28]  *** The last 200 lines of the pilot log: ***
[2025-10-09 04:08:29]  status_code=0
[2025-10-09 04:08:29]  storage_token=
[2025-10-09 04:08:29]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6835974871/log.46676269._002562.job.log.tgz.1
[2025-10-09 04:08:29]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/a7/93/log.46676269._002562.job.log.tgz.1
[2025-10-09 04:08:29]  workdir=None
[2025-10-09 04:08:29] ]
[2025-10-09 04:08:29] 2025-10-09 08:07:47,900 | INFO     | transferring file log.46676269._002562.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6835974871/log.46676269._002562.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-10-09 04:08:29] 2025-10-09 08:07:47,901 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6835974871/log.46676269._002562.job.log.tgz.1 /tmp/boinchome/slots/0/log.46676269._002562.job
[2025-10-09 04:08:29] 2025-10-09 08:07:47,922 | INFO     | adding to output.list: log.46676269._002562.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/a7/93/log.46676269._002562.job.log.tg
[2025-10-09 04:08:29] 2025-10-09 08:07:47,923 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-09 04:08:29] 2025-10-09 08:07:47,923 | INFO     | summary of transferred files:
[2025-10-09 04:08:29] 2025-10-09 08:07:47,923 | INFO     |  -- lfn=log.46676269._002562.job.log.tgz.1, status_code=0, status=transferred
[2025-10-09 04:08:29] 2025-10-09 08:07:47,923 | INFO     | stage-out finished correctly
[2025-10-09 04:08:29] 2025-10-09 08:07:48,650 | INFO     | time since job start (5872s) is within the limit (172800.0s)
[2025-10-09 04:08:29] 2025-10-09 08:07:49,262 | INFO     | monitor loop #416: job 0:6835974871 is in state 'finished'
[2025-10-09 04:08:29] 2025-10-09 08:07:49,263 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-09 04:08:29] 2025-10-09 08:07:49,516 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-09 04:08:29] 2025-10-09 08:07:50,655 | INFO     | time since job start (5874s) is within the limit (172800.0s)
[2025-10-09 04:08:29] 2025-10-09 08:07:50,936 | INFO     | job 6835974871 has state=finished
[2025-10-09 04:08:29] 2025-10-09 08:07:50,936 | INFO     | preparing for final server update for job 6835974871 in state='finished'
[2025-10-09 04:08:29] 2025-10-09 08:07:50,937 | INFO     | this job has now completed (state=finished)
[2025-10-09 04:08:29] 2025-10-09 08:07:50,937 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-09 04:08:29] 2025-10-09 08:07:50,937 | INFO     | log transfer has been attempted: DONE
[2025-10-09 04:08:29] 2025-10-09 08:07:50,937 | INFO     | job 6835974871 has finished - writing final server update
[2025-10-09 04:08:29] 2025-10-09 08:07:50,937 | INFO     | total number of processed events: 400 (read)
[2025-10-09 04:08:29] 2025-10-09 08:07:50,938 | INFO     | executing command: lscpu
[2025-10-09 04:08:29] 2025-10-09 08:07:50,998 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-09 04:08:29] 2025-10-09 08:07:51,766 | INFO     | monitor loop #417: job 0:6835974871 is in state 'finished'
[2025-10-09 04:08:29] 2025-10-09 08:07:51,768 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-09 04:08:29] 2025-10-09 08:07:52,661 | INFO     | time since job start (5876s) is within the limit (172800.0s)
[2025-10-09 04:08:29] 2025-10-09 08:07:54,272 | INFO     | monitor loop #418: job 0:6835974871 is in state 'finished'
[2025-10-09 04:08:29] 2025-10-09 08:07:54,273 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-09 04:08:29] 2025-10-09 08:07:54,668 | INFO     | time since job start (5878s) is within the limit (172800.0s)
[2025-10-09 04:08:29] 2025-10-09 08:07:55,685 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-09 04:08:29] 2025-10-09 08:07:55,691 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 3045.112531249999
[2025-10-09 04:08:29] 2025-10-09 08:07:55,708 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6835974871/memory_monitor_summary.json (trf name=prmon)
[2025-10-09 04:08:29] 2025-10-09 08:07:55,709 | INFO     | extracted standard info from prmon json
[2025-10-09 04:08:29] 2025-10-09 08:07:55,709 | INFO     | extracted standard memory fields from prmon json
[2025-10-09 04:08:29] 2025-10-09 08:07:55,709 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-09 04:08:29] 2025-10-09 08:07:55,709 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-09 04:08:29] 2025-10-09 08:07:55,709 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-09 04:08:29] 2025-10-09 08:07:55,711 | INFO     | fitting pss+swap vs Time
[2025-10-09 04:08:29] 2025-10-09 08:07:55,712 | INFO     | sum of square deviations: 218571540.0
[2025-10-09 04:08:29] 2025-10-09 08:07:55,712 | INFO     | sum of deviations: -5259849439.999999
[2025-10-09 04:08:29] 2025-10-09 08:07:55,712 | INFO     | mean x: 1759994412.0
[2025-10-09 04:08:29] 2025-10-09 08:07:55,712 | INFO     | mean y: 2687304.5393258426
[2025-10-09 04:08:29] 2025-10-09 08:07:55,712 | INFO     | -- intersect: 42356351566.41591
[2025-10-09 04:08:29] 2025-10-09 08:07:55,712 | INFO     | intersect: 42356351566.41591
[2025-10-09 04:08:29] 2025-10-09 08:07:55,713 | INFO     | chi2: 0.01305978766242583
[2025-10-09 04:08:29] 2025-10-09 08:07:55,713 | INFO     | -- intersect: 42356351566.41591
[2025-10-09 04:08:29] 2025-10-09 08:07:55,713 | INFO     | current memory leak: -24.06 B/s (using 89 data points, chi2=0.01)
[2025-10-09 04:08:29] 2025-10-09 08:07:55,713 | INFO     | could have reported an average CPU frequency of 3061 MHz (7 samples)
[2025-10-09 04:08:29] 2025-10-09 08:07:55,714 | INFO     | ..............................
[2025-10-09 04:08:29] 2025-10-09 08:07:55,714 | INFO     | . Timing measurements:
[2025-10-09 04:08:29] 2025-10-09 08:07:55,714 | INFO     | . get job = 0 s
[2025-10-09 04:08:29] 2025-10-09 08:07:55,714 | INFO     | . initial setup = 2 s
[2025-10-09 04:08:29] 2025-10-09 08:07:55,714 | INFO     | . payload setup = 5 s
[2025-10-09 04:08:29] 2025-10-09 08:07:55,714 | INFO     | . stage-in = 0 s
[2025-10-09 04:08:29] 2025-10-09 08:07:55,714 | INFO     | . payload execution = 5845 s
[2025-10-09 04:08:29] 2025-10-09 08:07:55,714 | INFO     | . stage-out = 0 s
[2025-10-09 04:08:29] 2025-10-09 08:07:55,714 | INFO     | . log creation = 0 s
[2025-10-09 04:08:29] 2025-10-09 08:07:55,715 | INFO     | ..............................
[2025-10-09 04:08:29] 2025-10-09 08:07:55,894 | INFO     | 
[2025-10-09 04:08:29] 2025-10-09 08:07:55,895 | INFO     | job summary report
[2025-10-09 04:08:29] 2025-10-09 08:07:55,895 | INFO     | --------------------------------------------------
[2025-10-09 04:08:29] 2025-10-09 08:07:55,895 | INFO     | PanDA job id: 6835974871
[2025-10-09 04:08:29] 2025-10-09 08:07:55,895 | INFO     | task id: 46676269
[2025-10-09 04:08:29] 2025-10-09 08:07:55,895 | INFO     | errors: (none)
[2025-10-09 04:08:29] 2025-10-09 08:07:55,896 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-09 04:08:29] 2025-10-09 08:07:55,896 | INFO     | pilot state: finished 
[2025-10-09 04:08:29] 2025-10-09 08:07:55,896 | INFO     | transexitcode: 0
[2025-10-09 04:08:29] 2025-10-09 08:07:55,896 | INFO     | exeerrorcode: 0
[2025-10-09 04:08:29] 2025-10-09 08:07:55,896 | INFO     | exeerrordiag: 
[2025-10-09 04:08:29] 2025-10-09 08:07:55,896 | INFO     | exitcode: 0
[2025-10-09 04:08:29] 2025-10-09 08:07:55,896 | INFO     | exitmsg: OK
[2025-10-09 04:08:29] 2025-10-09 08:07:55,897 | INFO     | cpuconsumptiontime: 33637 s
[2025-10-09 04:08:29] 2025-10-09 08:07:55,897 | INFO     | nevents: 400
[2025-10-09 04:08:29] 2025-10-09 08:07:55,897 | INFO     | neventsw: 0
[2025-10-09 04:08:29] 2025-10-09 08:07:55,897 | INFO     | pid: 3935638
[2025-10-09 04:08:29] 2025-10-09 08:07:55,897 | INFO     | pgrp: 3935638
[2025-10-09 04:08:29] 2025-10-09 08:07:55,897 | INFO     | corecount: 10
[2025-10-09 04:08:29] 2025-10-09 08:07:55,897 | INFO     | event service: False
[2025-10-09 04:08:29] 2025-10-09 08:07:55,897 | INFO     | sizes: {0: 2348024, 1: 2348880, 6: 2349142, 12: 2349170, 5854: 2375964, 5856: 2384962, 5857: 2385146, 5863: 2385340}
[2025-10-09 04:08:29] 2025-10-09 08:07:55,897 | INFO     | --------------------------------------------------
[2025-10-09 04:08:29] 2025-10-09 08:07:55,898 | INFO     | 
[2025-10-09 04:08:29] 2025-10-09 08:07:55,898 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-10-09 04:08:29] 2025-10-09 08:07:55,920 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-09 04:08:29] 2025-10-09 08:07:55,921 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-09 04:08:29] 2025-10-09 08:07:55,922 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-09 04:08:29] 2025-10-09 08:07:55,922 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-09 04:08:29] 2025-10-09 08:07:55,922 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-09 04:08:29] 2025-10-09 08:07:55,922 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-09 04:08:29] 2025-10-09 08:07:55,922 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-09 04:08:29] 2025-10-09 08:07:55,923 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-09 04:08:29] 2025-10-09 08:07:55,923 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-09 04:08:29] 2025-10-09 08:07:55,923 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-09 04:08:29] 2025-10-09 08:07:55,923 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-09 04:08:29] 2025-10-09 08:07:55,923 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-09 04:08:29] 2025-10-09 08:07:55,923 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-09 04:08:29] 2025-10-09 08:07:55,923 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-09 04:08:29] 2025-10-09 08:07:55,923 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-09 04:08:29] 2025-10-09 08:07:55,924 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-09 04:08:29] 2025-10-09 08:07:55,924 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-09 04:08:29] 2025-10-09 08:07:55,924 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-09 04:08:29] 2025-10-09 08:07:55,924 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-09 04:08:29] 2025-10-09 08:07:55,924 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-09 04:08:29] 2025-10-09 08:07:55,924 | INFO     | job 6835974871 has completed (purged errors)
[2025-10-09 04:08:29] 2025-10-09 08:07:55,924 | INFO     | overall cleanup function is called
[2025-10-09 04:08:29] 2025-10-09 08:07:56,225 | INFO     | PID=3927047 has CPU usage=10.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-10-09 04:08:29] 2025-10-09 08:07:56,225 | INFO     | .. there are 19 such processes running
[2025-10-09 04:08:29] 2025-10-09 08:07:56,934 | INFO     | --- collectZombieJob: --- 10, [3935638]
[2025-10-09 04:08:29] 2025-10-09 08:07:56,934 | INFO     | zombie collector waiting for pid 3935638
[2025-10-09 04:08:29] 2025-10-09 08:07:56,935 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-09 04:08:29] 2025-10-09 08:07:56,935 | INFO     | collected zombie processes
[2025-10-09 04:08:29] 2025-10-09 08:07:56,935 | INFO     | will attempt to kill all subprocesses of pid=3935638
[2025-10-09 04:08:29] 2025-10-09 08:07:57,268 | INFO     | process IDs to be killed: [3935638] (in reverse order)
[2025-10-09 04:08:29] 2025-10-09 08:07:57,383 | WARNING  | found no corresponding commands to process id(s)
[2025-10-09 04:08:29] 2025-10-09 08:07:57,383 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-09 04:08:29] 2025-10-09 08:07:57,399 | INFO     | did not find any defunct processes belonging to 3935638
[2025-10-09 04:08:29] 2025-10-09 08:07:57,415 | INFO     | did not find any defunct processes belonging to 3935638
[2025-10-09 04:08:29] 2025-10-09 08:07:57,415 | INFO     | ready for new job
[2025-10-09 04:08:29] 2025-10-09 08:07:57,415 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-09 04:08:29] 2025-10-09 08:07:57,417 | INFO     | ***************************************
[2025-10-09 04:08:29] 2025-10-09 08:07:57,418 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-09 04:08:29] 2025-10-09 08:07:57,418 | INFO     | ***************************************
[2025-10-09 04:08:29] 2025-10-09 08:07:57,418 | INFO     | 
[2025-10-09 04:08:29] 2025-10-09 08:07:57,423 | INFO     | architecture information:
[2025-10-09 04:08:29] 2025-10-09 08:07:57,424 | INFO     | executing command: cat /etc/os-release
[2025-10-09 04:08:29] 2025-10-09 08:07:57,440 | INFO     | cat /etc/os-release:
[2025-10-09 04:08:29] NAME="CentOS Linux"
[2025-10-09 04:08:29] VERSION="7 (Core)"
[2025-10-09 04:08:29] ID="centos"
[2025-10-09 04:08:29] ID_LIKE="rhel fedora"
[2025-10-09 04:08:29] VERSION_ID="7"
[2025-10-09 04:08:29] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-09 04:08:29] ANSI_COLOR="0;31"
[2025-10-09 04:08:29] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-09 04:08:29] HOME_URL="https://www.centos.org/"
[2025-10-09 04:08:29] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-09 04:08:29] 
[2025-10-09 04:08:29] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-09 04:08:29] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-09 04:08:29] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-09 04:08:29] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-09 04:08:29] 
[2025-10-09 04:08:29] 2025-10-09 08:07:57,441 | INFO     | ***************************************
[2025-10-09 04:08:29] 2025-10-09 08:07:57,944 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-10-09 04:08:29] 2025-10-09 08:07:57,962 | INFO     | sufficient remaining disk space (129837826048 B)
[2025-10-09 04:08:29] 2025-10-09 08:07:57,962 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-09 04:08:29] 2025-10-09 08:07:57,962 | INFO     | current server update state: UPDATING_FINAL
[2025-10-09 04:08:29] 2025-10-09 08:07:57,963 | INFO     | update_server=False
[2025-10-09 04:08:29] 2025-10-09 08:07:57,963 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-09 04:08:29] 2025-10-09 08:07:57,963 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-09 04:08:29] 2025-10-09 08:07:57,963 | INFO     | aborting loop
[2025-10-09 04:08:29] 2025-10-09 08:07:58,486 | INFO     | all data control threads have been joined
[2025-10-09 04:08:29] 2025-10-09 08:07:58,515 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-09 04:08:29] 2025-10-09 08:07:58,968 | INFO     | [job] retrieve thread has finished
[2025-10-09 04:08:29] 2025-10-09 08:07:58,968 | INFO     | [job] job monitor thread has finished
[2025-10-09 04:08:29] 2025-10-09 08:07:59,004 | INFO     | all job control threads have been joined
[2025-10-09 04:08:29] 2025-10-09 08:07:59,064 | INFO     | [payload] validate_pre thread has finished
[2025-10-09 04:08:29] 2025-10-09 08:07:59,093 | INFO     | [payload] validate_post thread has finished
[2025-10-09 04:08:29] 2025-10-09 08:07:59,302 | INFO     | all payload control threads have been joined
[2025-10-09 04:08:29] 2025-10-09 08:07:59,367 | INFO     | [payload] failed_post thread has finished
[2025-10-09 04:08:29] 2025-10-09 08:07:59,491 | INFO     | [data] control thread has finished
[2025-10-09 04:08:29] 2025-10-09 08:07:59,879 | INFO     | [payload] execute_payloads thread has finished
[2025-10-09 04:08:29] 2025-10-09 08:08:00,010 | INFO     | [job] control thread has finished
[2025-10-09 04:08:29] 2025-10-09 08:08:00,097 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-09 04:08:29] 2025-10-09 08:08:00,182 | INFO     | [job] validate thread has finished
[2025-10-09 04:08:29] 2025-10-09 08:08:00,230 | INFO     | [data] copytool_in thread has finished
[2025-10-09 04:08:29] 2025-10-09 08:08:00,291 | INFO     | [job] create_data_payload thread has finished
[2025-10-09 04:08:29] 2025-10-09 08:08:00,308 | INFO     | [payload] control thread has finished
[2025-10-09 04:08:29] 2025-10-09 08:08:00,520 | INFO     | [data] copytool_out thread has finished
[2025-10-09 04:08:29] 2025-10-09 08:08:00,801 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-09 04:08:29] 2025-10-09 08:08:01,806 | INFO     | [job] queue monitor thread has finished
[2025-10-09 04:08:29] 2025-10-09 08:08:04,102 | INFO     | [data] queue_monitor thread has finished
[2025-10-09 04:08:29] 2025-10-09 08:08:06,160 | INFO     | [monitor] cgroup control has ended
[2025-10-09 04:08:29] 2025-10-09 08:08:08,927 | INFO     | job.realtimelogging is not enabled
[2025-10-09 04:08:29] 2025-10-09 08:08:09,932 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-09 04:08:29] 2025-10-09 08:08:10,160 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139832674301760)>', '<ExcThread(monitor, started 139832047167232)>']
[2025-10-09 04:08:29] 2025-10-09 08:08:15,186 | INFO     | all workflow threads have been joined
[2025-10-09 04:08:29] 2025-10-09 08:08:15,186 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-09 04:08:29] 2025-10-09 08:08:15,187 | INFO     | traces error code: 0
[2025-10-09 04:08:29] 2025-10-09 08:08:15,187 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-09 04:08:29] 2025-10-09 08:08:28,653 | INFO     | PID=3927047 has CPU usage=2.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-09 04:08:29] 2025-10-09 08:08:28,654 | INFO     | .. there are 20 such processes running
[2025-10-09 04:08:29] 2025-10-09 08:08:28,654 | INFO     | found 0 job(s) in 20 queues
[2025-10-09 04:08:29] 2025-10-09 08:08:28,654 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-09 04:08:29] 2025-10-09 08:08:28,654 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-09 04:08:29] 2025-10-09 08:08:28,654 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-09 04:08:29] 2025-10-09 08:08:28,654 | INFO     | [monitor] control thread has ended
[2025-10-09 04:08:29] 2025-10-09 08:08:28,801 [wrapper] ==== pilot stdout END ====
[2025-10-09 04:08:29] 2025-10-09 08:08:28,804 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-09 04:08:29] 2025-10-09 08:08:28,808 [wrapper] pilotpid: 3927047
[2025-10-09 04:08:29] 2025-10-09 08:08:28,811 [wrapper] Pilot exit status: 0
[2025-10-09 04:08:29] 2025-10-09 08:08:28,826 [wrapper] pandaids: 6835974871
[2025-10-09 04:08:29] 2025-10-09 08:08:28,907 [wrapper] cleanup supervisor_pilot 4108379 3927048
[2025-10-09 04:08:29] 2025-10-09 08:08:28,911 [wrapper] Test setup, not cleaning
[2025-10-09 04:08:29] 2025-10-09 08:08:28,914 [wrapper] apfmon messages muted
[2025-10-09 04:08:29] 2025-10-09 08:08:28,918 [wrapper] ==== wrapper stdout END ====
[2025-10-09 04:08:29] 2025-10-09 08:08:28,921 [wrapper] ==== wrapper stderr END ====
[2025-10-09 04:08:29]  *** Error codes and diagnostics ***
[2025-10-09 04:08:29]     "exeErrorCode": 0,
[2025-10-09 04:08:29]     "exeErrorDiag": "",
[2025-10-09 04:08:29]     "pilotErrorCode": 0,
[2025-10-09 04:08:29]     "pilotErrorDiag": "",
[2025-10-09 04:08:29]  *** Listing of results directory ***
[2025-10-09 04:08:29] total 406316
[2025-10-09 04:08:29] -rw-r--r--. 1 boincer umatlas    557409 Oct  8 05:48 pilot3.tar.gz
[2025-10-09 04:08:29] -rwx------. 1 boincer umatlas     36292 Oct  8 05:51 runpilot2-wrapper.sh
[2025-10-09 04:08:29] -rw-r--r--. 1 boincer umatlas      5112 Oct  8 05:51 queuedata.json
[2025-10-09 04:08:29] -rw-r--r--. 1 boincer umatlas       100 Oct  9 02:29 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-09 04:08:29] -rwxr-xr-x. 1 boincer umatlas      7986 Oct  9 02:29 run_atlas
[2025-10-09 04:08:29] -rw-r--r--. 1 boincer umatlas       105 Oct  9 02:29 job.xml
[2025-10-09 04:08:29] -rw-r--r--. 2 boincer umatlas 219865219 Oct  9 02:29 EVNT.46676267._000103.pool.root.1
[2025-10-09 04:08:29] -rw-r--r--. 2 boincer umatlas     15120 Oct  9 02:29 start_atlas.sh
[2025-10-09 04:08:29] drwxrwx--x. 2 boincer umatlas      4096 Oct  9 02:29 shared
[2025-10-09 04:08:29] -rw-r--r--. 2 boincer umatlas    569673 Oct  9 02:29 input.tar.gz
[2025-10-09 04:08:29] -rw-r--r--. 1 boincer umatlas         0 Oct  9 02:29 boinc_lockfile
[2025-10-09 04:08:29] -rw-r--r--. 1 boincer umatlas      2548 Oct  9 02:29 pandaJob.out
[2025-10-09 04:08:29] -rw-------. 1 boincer umatlas    979298 Oct  9 02:29 agis_schedconf.cvmfs.json
[2025-10-09 04:08:29] -rw-------. 1 boincer umatlas   1560401 Oct  9 02:29 agis_ddmendpoints.agis.ALL.json
[2025-10-09 04:08:29] drwx------. 5 boincer umatlas      4096 Oct  9 02:29 pilot3
[2025-10-09 04:08:29] -rw-r--r--. 1 boincer umatlas      6946 Oct  9 04:02 init_data.xml
[2025-10-09 04:08:29] -rw-------. 1 boincer umatlas 189885097 Oct  9 04:07 HITS.46676269._002562.pool.root.1
[2025-10-09 04:08:29] -rw-r--r--. 1 boincer umatlas       529 Oct  9 04:07 boinc_task_state.xml
[2025-10-09 04:08:29] -rw-------. 1 boincer umatlas      1042 Oct  9 04:07 memory_monitor_summary.json
[2025-10-09 04:08:29] -rw-------. 1 boincer umatlas        95 Oct  9 04:07 pilot_heartbeat.json
[2025-10-09 04:08:29] -rw-------. 1 boincer umatlas    367645 Oct  9 04:07 log.46676269._002562.job.log.tgz.1
[2025-10-09 04:08:29] -rw-------. 1 boincer umatlas      7787 Oct  9 04:07 heartbeat.json
[2025-10-09 04:08:29] -rw-r--r--. 1 boincer umatlas      8192 Oct  9 04:08 boinc_mmap_file
[2025-10-09 04:08:29] -rw-r--r--. 1 boincer umatlas        27 Oct  9 04:08 wrapper_checkpoint.txt
[2025-10-09 04:08:29] -rw-------. 1 boincer umatlas       823 Oct  9 04:08 pilotlog.txt
[2025-10-09 04:08:29] -rw-------. 1 boincer umatlas    837518 Oct  9 04:08 log.46676269._002562.job.log.1
[2025-10-09 04:08:29] -rw-------. 1 boincer umatlas       357 Oct  9 04:08 output.list
[2025-10-09 04:08:29] -rw-r--r--. 1 boincer umatlas       620 Oct  9 04:08 runtime_log
[2025-10-09 04:08:29] -rw-------. 1 boincer umatlas   1228800 Oct  9 04:08 result.tar.gz
[2025-10-09 04:08:29] -rw-------. 1 boincer umatlas       654 Oct  9 04:08 wqBLDmk0fQ8n9Rq4apOajLDm4fhM0noT9bVof3QYDmn9LMDmpvjctm.diag
[2025-10-09 04:08:29] -rw-r--r--. 1 boincer umatlas      8700 Oct  9 04:08 runtime_log.err
[2025-10-09 04:08:29] -rw-r--r--. 1 boincer umatlas     22168 Oct  9 04:08 stderr.txt
[2025-10-09 04:08:29] HITS file was successfully produced:
[2025-10-09 04:08:29] -rw-------. 1 boincer umatlas 189885097 Oct  9 04:07 shared/HITS.pool.root.1
[2025-10-09 04:08:29]  *** Contents of shared directory: ***
[2025-10-09 04:08:29] total 401936
[2025-10-09 04:08:29] -rw-r--r--. 2 boincer umatlas 219865219 Oct  9 02:29 ATLAS.root_0
[2025-10-09 04:08:29] -rw-r--r--. 2 boincer umatlas     15120 Oct  9 02:29 start_atlas.sh
[2025-10-09 04:08:29] -rw-r--r--. 2 boincer umatlas    569673 Oct  9 02:29 input.tar.gz
[2025-10-09 04:08:29] -rw-------. 1 boincer umatlas 189885097 Oct  9 04:07 HITS.pool.root.1
[2025-10-09 04:08:29] -rw-------. 1 boincer umatlas   1228800 Oct  9 04:08 result.tar.gz
04:08:30 (3923363): run_atlas exited; CPU time 33745.533135
04:08:30 (3923363): called boinc_finish(0)

</stderr_txt>
]]>

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