Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
22:46:07 (2231241): wrapper (7.7.26015): starting
22:46:07 (2231241): wrapper: running run_atlas (--nthreads 8)
[2025-10-08 22:46:07] Arguments: --nthreads 8
[2025-10-08 22:46:07] Threads: 8
[2025-10-08 22:46:07] Checking for CVMFS
[2025-10-08 22:46:07] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-08 22:46:07] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-08 22:46:07] Running cvmfs_config stat atlas.cern.ch
[2025-10-08 22:46:07] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-08 22:46:07] 2.13.2.0 2216807 124340 411236 151493 0 68 32862152 40960001 14701 16776704 30 237903478 99.698 197021641 21778 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-10-08 22:46:07] CVMFS is ok
[2025-10-08 22:46:07] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-08 22:46:07] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-08 22:46:07] Further information can be found at the LHC@home message board.
[2025-10-08 22:46:07] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-08 22:46:07] Checking for apptainer binary...
[2025-10-08 22:46:07] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-08 22:46:07] Running /usr/bin/apptainer --version
[2025-10-08 22:46:07] apptainer version 1.4.3-1.el9
[2025-10-08 22:46:07] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-08 22:46:08] c7-11-11.aglt2.org
[2025-10-08 22:46:08] apptainer works
[2025-10-08 22:46:08] Set ATHENA_PROC_NUMBER=8
[2025-10-08 22:46:08] Set ATHENA_CORE_NUMBER=8
[2025-10-08 22:46:08] Starting ATLAS job with PandaID=6830881264
[2025-10-08 22:46:08] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-08 23:57:33]  *** The last 200 lines of the pilot log: ***
[2025-10-08 23:57:33]  status=None
[2025-10-08 23:57:33]  status_code=0
[2025-10-08 23:57:33]  storage_token=
[2025-10-08 23:57:33]  surl=/tmp/boinchome/slots/2/PanDA_Pilot-6830881264/log.46376905._075886.job.log.tgz.1
[2025-10-08 23:57:33]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/24/8d/log.46376905._075886.job.log.tgz.1
[2025-10-08 23:57:33]  workdir=None
[2025-10-08 23:57:33] ]
[2025-10-08 23:57:33] 2025-10-09 03:56:25,483 | INFO     | transferring file log.46376905._075886.job.log.tgz.1 from /tmp/boinchome/slots/2/PanDA_Pilot-6830881264/log.46376905._075886.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-10-08 23:57:33] 2025-10-09 03:56:25,483 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/2/PanDA_Pilot-6830881264/log.46376905._075886.job.log.tgz.1 /tmp/boinchome/slots/2/log.46376905._075886.job
[2025-10-08 23:57:33] 2025-10-09 03:56:25,559 | INFO     | adding to output.list: log.46376905._075886.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/24/8d/log.46376905._075886.job.log.tg
[2025-10-08 23:57:33] 2025-10-09 03:56:25,563 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-08 23:57:33] 2025-10-09 03:56:25,563 | INFO     | summary of transferred files:
[2025-10-08 23:57:33] 2025-10-09 03:56:25,564 | INFO     |  -- lfn=log.46376905._075886.job.log.tgz.1, status_code=0, status=transferred
[2025-10-08 23:57:33] 2025-10-09 03:56:25,565 | INFO     | stage-out finished correctly
[2025-10-08 23:57:33] 2025-10-09 03:56:26,705 | INFO     | time since job start (4206s) is within the limit (172800.0s)
[2025-10-08 23:57:33] 2025-10-09 03:56:26,706 | INFO     | 4208s have passed since pilot start - server update state is 'RUNNING'
[2025-10-08 23:57:33] 2025-10-09 03:56:26,811 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-08 23:57:33] 2025-10-09 03:56:27,621 | INFO     | job 6830881264 has state=finished
[2025-10-08 23:57:33] 2025-10-09 03:56:27,622 | INFO     | preparing for final server update for job 6830881264 in state='finished'
[2025-10-08 23:57:33] 2025-10-09 03:56:27,622 | INFO     | this job has now completed (state=finished)
[2025-10-08 23:57:33] 2025-10-09 03:56:27,622 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-08 23:57:33] 2025-10-09 03:56:27,622 | INFO     | log transfer has been attempted: DONE
[2025-10-08 23:57:33] 2025-10-09 03:56:27,623 | INFO     | job 6830881264 has finished - writing final server update
[2025-10-08 23:57:33] 2025-10-09 03:56:27,623 | INFO     | total number of processed events: 400 (read)
[2025-10-08 23:57:33] 2025-10-09 03:56:27,631 | INFO     | executing command: lscpu
[2025-10-08 23:57:33] 2025-10-09 03:56:27,709 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-08 23:57:33] 2025-10-09 03:56:28,723 | INFO     | time since job start (4208s) is within the limit (172800.0s)
[2025-10-08 23:57:33] 2025-10-09 03:56:29,218 | WARNING  | process 2241347 can no longer be monitored (due to stat problems) - aborting
[2025-10-08 23:57:33] 2025-10-09 03:56:29,219 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6830881264/memory_monitor_summary.json (trf name=prmon)
[2025-10-08 23:57:33] 2025-10-09 03:56:29,220 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6830881264/memory_monitor_summary.json (trf name=prmon)
[2025-10-08 23:57:33] 2025-10-09 03:56:29,478 | INFO     | number of running child processes to parent process 2241347: 1
[2025-10-08 23:57:33] 2025-10-09 03:56:29,479 | INFO     | maximum number of monitored processes: 6
[2025-10-08 23:57:33] 2025-10-09 03:56:30,728 | INFO     | time since job start (4210s) is within the limit (172800.0s)
[2025-10-08 23:57:33] 2025-10-09 03:56:31,987 | INFO     | monitor loop #304: job 0:6830881264 is in state 'finished'
[2025-10-08 23:57:33] 2025-10-09 03:56:31,990 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-08 23:57:33] 2025-10-09 03:56:32,737 | INFO     | time since job start (4212s) is within the limit (172800.0s)
[2025-10-08 23:57:33] 2025-10-09 03:56:32,783 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-08 23:57:33] 2025-10-09 03:56:32,793 | INFO     | found 32 cores (16 cores per socket, 2 sockets) HT, CPU MHz: 3279.340750000001
[2025-10-08 23:57:33] 2025-10-09 03:56:32,815 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6830881264/memory_monitor_summary.json (trf name=prmon)
[2025-10-08 23:57:33] 2025-10-09 03:56:32,816 | INFO     | extracted standard info from prmon json
[2025-10-08 23:57:33] 2025-10-09 03:56:32,816 | INFO     | extracted standard memory fields from prmon json
[2025-10-08 23:57:33] 2025-10-09 03:56:32,816 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-08 23:57:33] 2025-10-09 03:56:32,816 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-08 23:57:33] 2025-10-09 03:56:32,816 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-08 23:57:33] 2025-10-09 03:56:32,822 | INFO     | fitting pss+swap vs Time
[2025-10-08 23:57:33] 2025-10-09 03:56:32,822 | INFO     | sum of square deviations: 73884695.48387094
[2025-10-08 23:57:33] 2025-10-09 03:56:32,822 | INFO     | sum of deviations: -11006650586.387096
[2025-10-08 23:57:33] 2025-10-09 03:56:32,823 | INFO     | mean x: 1759980172.516129
[2025-10-08 23:57:33] 2025-10-09 03:56:32,823 | INFO     | mean y: 2316308.3870967743
[2025-10-08 23:57:33] 2025-10-09 03:56:32,823 | INFO     | -- intersect: 262187694091.84317
[2025-10-08 23:57:33] 2025-10-09 03:56:32,823 | INFO     | intersect: 262187694091.84317
[2025-10-08 23:57:33] 2025-10-09 03:56:32,823 | INFO     | chi2: 0.1181769145342566
[2025-10-08 23:57:33] 2025-10-09 03:56:32,823 | INFO     | -- intersect: 262187694091.84317
[2025-10-08 23:57:33] 2025-10-09 03:56:32,823 | INFO     | current memory leak: -148.97 B/s (using 62 data points, chi2=0.12)
[2025-10-08 23:57:33] 2025-10-09 03:56:32,823 | INFO     | could have reported an average CPU frequency of 3259 MHz (6 samples)
[2025-10-08 23:57:33] 2025-10-09 03:56:32,823 | INFO     | ..............................
[2025-10-08 23:57:33] 2025-10-09 03:56:32,824 | INFO     | . Timing measurements:
[2025-10-08 23:57:33] 2025-10-09 03:56:32,824 | INFO     | . get job = 0 s
[2025-10-08 23:57:33] 2025-10-09 03:56:32,824 | INFO     | . initial setup = 2 s
[2025-10-08 23:57:33] 2025-10-09 03:56:32,824 | INFO     | . payload setup = 5 s
[2025-10-08 23:57:33] 2025-10-09 03:56:32,824 | INFO     | . stage-in = 0 s
[2025-10-08 23:57:33] 2025-10-09 03:56:32,824 | INFO     | . payload execution = 4179 s
[2025-10-08 23:57:33] 2025-10-09 03:56:32,824 | INFO     | . stage-out = 1 s
[2025-10-08 23:57:33] 2025-10-09 03:56:32,824 | INFO     | . log creation = 0 s
[2025-10-08 23:57:33] 2025-10-09 03:56:32,824 | INFO     | ..............................
[2025-10-08 23:57:33] 2025-10-09 03:56:33,365 | INFO     | 
[2025-10-08 23:57:33] 2025-10-09 03:56:33,365 | INFO     | job summary report
[2025-10-08 23:57:33] 2025-10-09 03:56:33,366 | INFO     | --------------------------------------------------
[2025-10-08 23:57:33] 2025-10-09 03:56:33,366 | INFO     | PanDA job id: 6830881264
[2025-10-08 23:57:33] 2025-10-09 03:56:33,366 | INFO     | task id: 46376905
[2025-10-08 23:57:33] 2025-10-09 03:56:33,366 | INFO     | errors: (none)
[2025-10-08 23:57:33] 2025-10-09 03:56:33,366 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-08 23:57:33] 2025-10-09 03:56:33,366 | INFO     | pilot state: finished 
[2025-10-08 23:57:33] 2025-10-09 03:56:33,366 | INFO     | transexitcode: 0
[2025-10-08 23:57:33] 2025-10-09 03:56:33,366 | INFO     | exeerrorcode: 0
[2025-10-08 23:57:33] 2025-10-09 03:56:33,366 | INFO     | exeerrordiag: 
[2025-10-08 23:57:33] 2025-10-09 03:56:33,366 | INFO     | exitcode: 0
[2025-10-08 23:57:33] 2025-10-09 03:56:33,366 | INFO     | exitmsg: OK
[2025-10-08 23:57:33] 2025-10-09 03:56:33,366 | INFO     | cpuconsumptiontime: 28099 s
[2025-10-08 23:57:33] 2025-10-09 03:56:33,366 | INFO     | nevents: 400
[2025-10-08 23:57:33] 2025-10-09 03:56:33,366 | INFO     | neventsw: 0
[2025-10-08 23:57:33] 2025-10-09 03:56:33,367 | INFO     | pid: 2241347
[2025-10-08 23:57:33] 2025-10-09 03:56:33,367 | INFO     | pgrp: 2241347
[2025-10-08 23:57:33] 2025-10-09 03:56:33,367 | INFO     | corecount: 8
[2025-10-08 23:57:33] 2025-10-09 03:56:33,367 | INFO     | event service: False
[2025-10-08 23:57:33] 2025-10-09 03:56:33,367 | INFO     | sizes: {0: 2348815, 5: 2349077, 11: 2349133, 4188: 2375005, 4190: 2384003, 4191: 2384059, 4197: 2384381}
[2025-10-08 23:57:33] 2025-10-09 03:56:33,367 | INFO     | --------------------------------------------------
[2025-10-08 23:57:33] 2025-10-09 03:56:33,367 | INFO     | 
[2025-10-08 23:57:33] 2025-10-09 03:56:33,367 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-10-08 23:57:33] 2025-10-09 03:56:33,397 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-08 23:57:33] 2025-10-09 03:56:33,398 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-08 23:57:33] 2025-10-09 03:56:33,398 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-08 23:57:33] 2025-10-09 03:56:33,398 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-08 23:57:33] 2025-10-09 03:56:33,398 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-08 23:57:33] 2025-10-09 03:56:33,398 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-08 23:57:33] 2025-10-09 03:56:33,398 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-08 23:57:33] 2025-10-09 03:56:33,398 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-08 23:57:33] 2025-10-09 03:56:33,400 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-08 23:57:33] 2025-10-09 03:56:33,400 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-08 23:57:33] 2025-10-09 03:56:33,400 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-08 23:57:33] 2025-10-09 03:56:33,400 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-08 23:57:33] 2025-10-09 03:56:33,400 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-08 23:57:33] 2025-10-09 03:56:33,400 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-08 23:57:33] 2025-10-09 03:56:33,400 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-08 23:57:33] 2025-10-09 03:56:33,400 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-08 23:57:33] 2025-10-09 03:56:33,400 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-08 23:57:33] 2025-10-09 03:56:33,400 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-08 23:57:33] 2025-10-09 03:56:33,400 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-08 23:57:33] 2025-10-09 03:56:33,400 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-08 23:57:33] 2025-10-09 03:56:33,401 | INFO     | job 6830881264 has completed (purged errors)
[2025-10-08 23:57:33] 2025-10-09 03:56:33,401 | INFO     | overall cleanup function is called
[2025-10-08 23:57:33] 2025-10-09 03:56:34,411 | INFO     | --- collectZombieJob: --- 10, [2241347]
[2025-10-08 23:57:33] 2025-10-09 03:56:34,411 | INFO     | zombie collector waiting for pid 2241347
[2025-10-08 23:57:33] 2025-10-09 03:56:34,412 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-08 23:57:33] 2025-10-09 03:56:34,412 | INFO     | collected zombie processes
[2025-10-08 23:57:33] 2025-10-09 03:56:34,412 | INFO     | will attempt to kill all subprocesses of pid=2241347
[2025-10-08 23:57:33] 2025-10-09 03:56:34,720 | INFO     | process IDs to be killed: [2241347] (in reverse order)
[2025-10-08 23:57:33] 2025-10-09 03:56:34,864 | WARNING  | found no corresponding commands to process id(s)
[2025-10-08 23:57:33] 2025-10-09 03:56:34,864 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-08 23:57:33] 2025-10-09 03:56:34,881 | INFO     | did not find any defunct processes belonging to 2241347
[2025-10-08 23:57:33] 2025-10-09 03:56:34,891 | INFO     | did not find any defunct processes belonging to 2241347
[2025-10-08 23:57:33] 2025-10-09 03:56:34,891 | INFO     | ready for new job
[2025-10-08 23:57:33] 2025-10-09 03:56:34,891 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-08 23:57:33] 2025-10-09 03:56:34,893 | INFO     | ***************************************
[2025-10-08 23:57:33] 2025-10-09 03:56:34,893 | INFO     | ***  PanDA Pilot version 3.10.5.57  ***
[2025-10-08 23:57:33] 2025-10-09 03:56:34,893 | INFO     | ***************************************
[2025-10-08 23:57:33] 2025-10-09 03:56:34,893 | INFO     | 
[2025-10-08 23:57:33] 2025-10-09 03:56:34,910 | INFO     | architecture information:
[2025-10-08 23:57:33] 2025-10-09 03:56:34,910 | INFO     | executing command: cat /etc/os-release
[2025-10-08 23:57:33] 2025-10-09 03:56:34,928 | INFO     | cat /etc/os-release:
[2025-10-08 23:57:33] NAME="CentOS Linux"
[2025-10-08 23:57:33] VERSION="7 (Core)"
[2025-10-08 23:57:33] ID="centos"
[2025-10-08 23:57:33] ID_LIKE="rhel fedora"
[2025-10-08 23:57:33] VERSION_ID="7"
[2025-10-08 23:57:33] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-08 23:57:33] ANSI_COLOR="0;31"
[2025-10-08 23:57:33] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-08 23:57:33] HOME_URL="https://www.centos.org/"
[2025-10-08 23:57:33] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-08 23:57:33] 
[2025-10-08 23:57:33] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-08 23:57:33] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-08 23:57:33] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-08 23:57:33] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-08 23:57:33] 
[2025-10-08 23:57:33] 2025-10-09 03:56:34,929 | INFO     | ***************************************
[2025-10-08 23:57:33] 2025-10-09 03:56:35,434 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-10-08 23:57:33] 2025-10-09 03:56:35,456 | INFO     | sufficient remaining disk space (85026930688 B)
[2025-10-08 23:57:33] 2025-10-09 03:56:35,457 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-08 23:57:33] 2025-10-09 03:56:35,457 | INFO     | current server update state: UPDATING_FINAL
[2025-10-08 23:57:33] 2025-10-09 03:56:35,457 | INFO     | update_server=False
[2025-10-08 23:57:33] 2025-10-09 03:56:35,457 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-08 23:57:33] 2025-10-09 03:56:35,501 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-08 23:57:33] 2025-10-09 03:56:35,502 | INFO     | aborting loop
[2025-10-08 23:57:33] 2025-10-09 03:56:35,506 | INFO     | all data control threads have been joined
[2025-10-08 23:57:33] 2025-10-09 03:56:35,935 | INFO     | all job control threads have been joined
[2025-10-08 23:57:33] 2025-10-09 03:56:36,234 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-08 23:57:33] 2025-10-09 03:56:36,303 | INFO     | all payload control threads have been joined
[2025-10-08 23:57:33] 2025-10-09 03:56:36,461 | INFO     | [job] retrieve thread has finished
[2025-10-08 23:57:33] 2025-10-09 03:56:36,511 | INFO     | [data] control thread has finished
[2025-10-08 23:57:33] 2025-10-09 03:56:36,519 | INFO     | [job] job monitor thread has finished
[2025-10-08 23:57:33] 2025-10-09 03:56:36,941 | INFO     | [job] control thread has finished
[2025-10-08 23:57:33] 2025-10-09 03:56:37,026 | INFO     | [payload] execute_payloads thread has finished
[2025-10-08 23:57:33] 2025-10-09 03:56:37,072 | INFO     | [data] copytool_in thread has finished
[2025-10-08 23:57:33] 2025-10-09 03:56:37,112 | INFO     | [job] create_data_payload thread has finished
[2025-10-08 23:57:33] 2025-10-09 03:56:37,267 | INFO     | [job] validate thread has finished
[2025-10-08 23:57:33] 2025-10-09 03:56:37,309 | INFO     | [payload] control thread has finished
[2025-10-08 23:57:33] 2025-10-09 03:56:37,453 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-08 23:57:33] 2025-10-09 03:56:37,518 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-08 23:57:33] 2025-10-09 03:56:37,643 | INFO     | [payload] validate_pre thread has finished
[2025-10-08 23:57:33] 2025-10-09 03:56:37,693 | INFO     | [payload] failed_post thread has finished
[2025-10-08 23:57:33] 2025-10-09 03:56:37,959 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-08 23:57:33] 2025-10-09 03:56:37,987 | INFO     | [payload] validate_post thread has finished
[2025-10-08 23:57:33] 2025-10-09 03:56:38,243 | INFO     | [data] copytool_out thread has finished
[2025-10-08 23:57:33] 2025-10-09 03:56:38,964 | INFO     | [job] queue monitor thread has finished
[2025-10-08 23:57:33] 2025-10-09 03:56:41,462 | INFO     | [data] queue_monitor thread has finished
[2025-10-08 23:57:33] 2025-10-09 03:57:06,233 | INFO     | PID=2234963 has CPU usage=5.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-08 23:57:33] 2025-10-09 03:57:06,233 | INFO     | .. there are 17 such processes running
[2025-10-08 23:57:33] 2025-10-09 03:57:06,234 | INFO     | found 0 job(s) in 20 queues
[2025-10-08 23:57:33] 2025-10-09 03:57:06,235 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-08 23:57:33] 2025-10-09 03:57:06,235 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-08 23:57:33] 2025-10-09 03:57:26,983 | INFO     | [monitor] cgroup control has ended
[2025-10-08 23:57:33] 2025-10-09 03:57:28,110 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140563298133824)>', '<ExcThread(monitor, started 140562661369600)>']
[2025-10-08 23:57:33] 2025-10-09 03:57:28,358 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-08 23:57:33] 2025-10-09 03:57:28,358 | INFO     | [monitor] control thread has ended
[2025-10-08 23:57:33] 2025-10-09 03:57:33,136 | INFO     | all workflow threads have been joined
[2025-10-08 23:57:33] 2025-10-09 03:57:33,137 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-08 23:57:33] 2025-10-09 03:57:33,137 | INFO     | traces error code: 0
[2025-10-08 23:57:33] 2025-10-09 03:57:33,137 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-08 23:57:33] 2025-10-09 03:57:33,438 [wrapper] ==== pilot stdout END ====
[2025-10-08 23:57:33] 2025-10-09 03:57:33,442 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-08 23:57:33] 2025-10-09 03:57:33,445 [wrapper] pilotpid: 2234963
[2025-10-08 23:57:33] 2025-10-09 03:57:33,449 [wrapper] Pilot exit status: 0
[2025-10-08 23:57:33] 2025-10-09 03:57:33,463 [wrapper] pandaids: 6830881264
[2025-10-08 23:57:33] 2025-10-09 03:57:33,544 [wrapper] cleanup supervisor_pilot 2419892 2234964
[2025-10-08 23:57:33] 2025-10-09 03:57:33,548 [wrapper] Test setup, not cleaning
[2025-10-08 23:57:33] 2025-10-09 03:57:33,551 [wrapper] apfmon messages muted
[2025-10-08 23:57:33] 2025-10-09 03:57:33,554 [wrapper] ==== wrapper stdout END ====
[2025-10-08 23:57:33] 2025-10-09 03:57:33,557 [wrapper] ==== wrapper stderr END ====
[2025-10-08 23:57:33]  *** Error codes and diagnostics ***
[2025-10-08 23:57:33]     "exeErrorCode": 0,
[2025-10-08 23:57:33]     "exeErrorDiag": "",
[2025-10-08 23:57:33]     "pilotErrorCode": 0,
[2025-10-08 23:57:33]     "pilotErrorDiag": "",
[2025-10-08 23:57:33]  *** Listing of results directory ***
[2025-10-08 23:57:33] total 389776
[2025-10-08 23:57:33] -rw-r--r--. 1 boincer umatlas    552446 Oct  4 23:58 pilot3.tar.gz
[2025-10-08 23:57:33] -rwx------. 1 boincer umatlas     36292 Oct  5 00:11 runpilot2-wrapper.sh
[2025-10-08 23:57:33] -rw-r--r--. 1 boincer umatlas      5112 Oct  5 00:11 queuedata.json
[2025-10-08 23:57:33] -rw-r--r--. 1 boincer umatlas       100 Oct  8 22:46 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-08 23:57:33] -rwxr-xr-x. 1 boincer umatlas      7986 Oct  8 22:46 run_atlas
[2025-10-08 23:57:33] -rw-r--r--. 1 boincer umatlas       105 Oct  8 22:46 job.xml
[2025-10-08 23:57:33] -rw-r--r--. 2 boincer umatlas 213665181 Oct  8 22:46 EVNT.46376901._002770.pool.root.1
[2025-10-08 23:57:33] -rw-r--r--. 2 boincer umatlas     15120 Oct  8 22:46 start_atlas.sh
[2025-10-08 23:57:33] drwxrwx--x. 2 boincer umatlas      4096 Oct  8 22:46 shared
[2025-10-08 23:57:33] -rw-r--r--. 2 boincer umatlas    565598 Oct  8 22:46 input.tar.gz
[2025-10-08 23:57:33] -rw-r--r--. 1 boincer umatlas         0 Oct  8 22:46 boinc_lockfile
[2025-10-08 23:57:33] -rw-r--r--. 1 boincer umatlas      2518 Oct  8 22:46 pandaJob.out
[2025-10-08 23:57:33] -rw-------. 1 boincer umatlas    979306 Oct  8 22:46 agis_schedconf.cvmfs.json
[2025-10-08 23:57:33] -rw-------. 1 boincer umatlas   1560401 Oct  8 22:46 agis_ddmendpoints.agis.ALL.json
[2025-10-08 23:57:33] drwx------. 4 boincer umatlas      4096 Oct  8 22:46 pilot3
[2025-10-08 23:57:33] -rw-r--r--. 1 boincer umatlas      6896 Oct  8 23:55 init_data.xml
[2025-10-08 23:57:33] -rw-------. 1 boincer umatlas 179705470 Oct  8 23:55 HITS.46376905._075886.pool.root.1
[2025-10-08 23:57:33] -rw-r--r--. 1 boincer umatlas       529 Oct  8 23:55 boinc_task_state.xml
[2025-10-08 23:57:33] -rw-------. 1 boincer umatlas      1027 Oct  8 23:56 memory_monitor_summary.json
[2025-10-08 23:57:33] -rw-------. 1 boincer umatlas    315131 Oct  8 23:56 log.46376905._075886.job.log.tgz.1
[2025-10-08 23:57:33] -rw-------. 1 boincer umatlas      7774 Oct  8 23:56 heartbeat.json
[2025-10-08 23:57:33] -rw-------. 1 boincer umatlas        95 Oct  8 23:57 pilot_heartbeat.json
[2025-10-08 23:57:33] -rw-r--r--. 1 boincer umatlas      8192 Oct  8 23:57 boinc_mmap_file
[2025-10-08 23:57:33] -rw-r--r--. 1 boincer umatlas        27 Oct  8 23:57 wrapper_checkpoint.txt
[2025-10-08 23:57:33] -rw-------. 1 boincer umatlas      4824 Oct  8 23:57 pilotlog.txt
[2025-10-08 23:57:33] -rw-------. 1 boincer umatlas    617932 Oct  8 23:57 log.46376905._075886.job.log.1
[2025-10-08 23:57:33] -rw-------. 1 boincer umatlas       357 Oct  8 23:57 output.list
[2025-10-08 23:57:33] -rw-r--r--. 1 boincer umatlas       620 Oct  8 23:57 runtime_log
[2025-10-08 23:57:33] -rw-------. 1 boincer umatlas    952320 Oct  8 23:57 result.tar.gz
[2025-10-08 23:57:33] -rw-------. 1 boincer umatlas       652 Oct  8 23:57 umFODmwGVP8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmzzNNDmXTW9Mo.diag
[2025-10-08 23:57:33] -rw-r--r--. 1 boincer umatlas      8703 Oct  8 23:57 runtime_log.err
[2025-10-08 23:57:33] -rw-r--r--. 1 boincer umatlas     22092 Oct  8 23:57 stderr.txt
[2025-10-08 23:57:33] HITS file was successfully produced:
[2025-10-08 23:57:33] -rw-------. 1 boincer umatlas 179705470 Oct  8 23:55 shared/HITS.pool.root.1
[2025-10-08 23:57:33]  *** Contents of shared directory: ***
[2025-10-08 23:57:33] total 385668
[2025-10-08 23:57:33] -rw-r--r--. 2 boincer umatlas 213665181 Oct  8 22:46 ATLAS.root_0
[2025-10-08 23:57:33] -rw-r--r--. 2 boincer umatlas     15120 Oct  8 22:46 start_atlas.sh
[2025-10-08 23:57:33] -rw-r--r--. 2 boincer umatlas    565598 Oct  8 22:46 input.tar.gz
[2025-10-08 23:57:33] -rw-------. 1 boincer umatlas 179705470 Oct  8 23:55 HITS.pool.root.1
[2025-10-08 23:57:33] -rw-------. 1 boincer umatlas    952320 Oct  8 23:57 result.tar.gz
23:57:34 (2231241): run_atlas exited; CPU time 28140.819972
23:57:34 (2231241): called boinc_finish(0)

</stderr_txt>
]]>

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