Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
03:55:41 (1192031): wrapper (7.7.26015): starting
03:55:41 (1192031): wrapper: running run_atlas (--nthreads 2)
[2025-10-09 03:55:41] Arguments: --nthreads 2
[2025-10-09 03:55:41] Threads: 2
[2025-10-09 03:55:41] Checking for CVMFS
[2025-10-09 03:55:43] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-09 03:55:44] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-09 03:55:44] Running cvmfs_config stat atlas.cern.ch
[2025-10-09 03:55:44] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-09 03:55:44] 2.9.2.0 1192227 0 30040 151491 3 1 27197148 36864000 0 130560 0 0 0.000 1291 1180 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-09 03:55:44] CVMFS is ok
[2025-10-09 03:55:44] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-09 03:55:44] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-09 03:55:44] Further information can be found at the LHC@home message board.
[2025-10-09 03:55:44] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-09 03:55:44] Checking for apptainer binary...
[2025-10-09 03:55:44] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-09 03:55:44] Running /usr/bin/apptainer --version
[2025-10-09 03:55:44] apptainer version 1.4.1-1.1
[2025-10-09 03:55:44] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-09 03:55:44] thA337
[2025-10-09 03:55:44] apptainer works
[2025-10-09 03:55:44] Set ATHENA_PROC_NUMBER=2
[2025-10-09 03:55:44] Set ATHENA_CORE_NUMBER=2
[2025-10-09 03:55:44] Starting ATLAS job with PandaID=6836605886
[2025-10-09 03:55:44] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-09 05:58:18]  *** The last 200 lines of the pilot log: ***
[2025-10-09 05:58:18] 2025-10-09 03:57:33,863 | INFO     | collected zombie processes
[2025-10-09 05:58:18] 2025-10-09 03:57:33,863 | INFO     | will attempt to kill all subprocesses of pid=1202709
[2025-10-09 05:58:18] 2025-10-09 03:57:33,896 | INFO     | process IDs to be killed: [1202709] (in reverse order)
[2025-10-09 05:58:18] 2025-10-09 03:57:33,915 | WARNING  | found no corresponding commands to process id(s)
[2025-10-09 05:58:18] 2025-10-09 03:57:33,915 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-09 05:58:18] 2025-10-09 03:57:33,916 | INFO     | did not find any defunct processes belonging to 1202709
[2025-10-09 05:58:18] 2025-10-09 03:57:33,916 | INFO     | did not find any defunct processes belonging to 1202709
[2025-10-09 05:58:18] 2025-10-09 03:57:33,916 | INFO     | ready for new job
[2025-10-09 05:58:18] 2025-10-09 03:57:33,917 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-09 05:58:18] 2025-10-09 03:57:33,917 | INFO     | ***************************************
[2025-10-09 05:58:18] 2025-10-09 03:57:33,917 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-09 05:58:18] 2025-10-09 03:57:33,917 | INFO     | ***************************************
[2025-10-09 05:58:18] 2025-10-09 03:57:33,917 | INFO     | 
[2025-10-09 05:58:18] 2025-10-09 03:57:33,917 | INFO     | architecture information:
[2025-10-09 05:58:18] 2025-10-09 03:57:33,917 | INFO     | executing command: cat /etc/os-release
[2025-10-09 05:58:18] 2025-10-09 03:57:33,925 | INFO     | cat /etc/os-release:
[2025-10-09 05:58:18] NAME="CentOS Linux"
[2025-10-09 05:58:18] VERSION="7 (Core)"
[2025-10-09 05:58:18] ID="centos"
[2025-10-09 05:58:18] ID_LIKE="rhel fedora"
[2025-10-09 05:58:18] VERSION_ID="7"
[2025-10-09 05:58:18] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-09 05:58:18] ANSI_COLOR="0;31"
[2025-10-09 05:58:18] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-09 05:58:18] HOME_URL="https://www.centos.org/"
[2025-10-09 05:58:18] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-09 05:58:18] 
[2025-10-09 05:58:18] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-09 05:58:18] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-09 05:58:18] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-09 05:58:18] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-09 05:58:18] 
[2025-10-09 05:58:18] 2025-10-09 03:57:33,925 | INFO     | ***************************************
[2025-10-09 05:58:18] 2025-10-09 03:57:34,429 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-09 05:58:18] 2025-10-09 03:57:34,440 | INFO     | sufficient remaining disk space (485035606016 B)
[2025-10-09 05:58:18] 2025-10-09 03:57:34,440 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-09 05:58:18] 2025-10-09 03:57:34,441 | INFO     | current server update state: UPDATING_FINAL
[2025-10-09 05:58:18] 2025-10-09 03:57:34,441 | INFO     | update_server=False
[2025-10-09 05:58:18] 2025-10-09 03:57:34,441 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-09 05:58:18] 2025-10-09 03:57:34,441 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-09 05:58:18] 2025-10-09 03:57:34,441 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-09 05:58:18] 2025-10-09 03:57:34,441 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-09 05:58:18] 2025-10-09 03:57:34,441 | INFO     | aborting loop
[2025-10-09 05:58:18] 2025-10-09 03:57:34,454 | INFO     | all payload control threads have been joined
[2025-10-09 05:58:18] 2025-10-09 03:57:35,444 | INFO     | [job] job monitor thread has finished
[2025-10-09 05:58:18] 2025-10-09 03:57:35,446 | INFO     | [job] retrieve thread has finished
[2025-10-09 05:58:18] 2025-10-09 03:57:35,446 | INFO     | [job] queue monitor thread has finished
[2025-10-09 05:58:18] 2025-10-09 03:57:35,447 | INFO     | all data control threads have been joined
[2025-10-09 05:58:18] 2025-10-09 03:57:35,460 | INFO     | [payload] control thread has finished
[2025-10-09 05:58:18] 2025-10-09 03:57:35,791 | INFO     | all job control threads have been joined
[2025-10-09 05:58:18] 2025-10-09 03:57:35,873 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-09 05:58:18] 2025-10-09 03:57:36,009 | INFO     | [data] copytool_in thread has finished
[2025-10-09 05:58:18] 2025-10-09 03:57:36,087 | INFO     | [payload] validate_post thread has finished
[2025-10-09 05:58:18] 2025-10-09 03:57:36,246 | INFO     | [job] validate thread has finished
[2025-10-09 05:58:18] 2025-10-09 03:57:36,444 | INFO     | [payload] validate_pre thread has finished
[2025-10-09 05:58:18] 2025-10-09 03:57:36,446 | INFO     | [data] copytool_out thread has finished
[2025-10-09 05:58:18] 2025-10-09 03:57:36,452 | INFO     | [data] control thread has finished
[2025-10-09 05:58:18] 2025-10-09 03:57:36,575 | INFO     | [job] create_data_payload thread has finished
[2025-10-09 05:58:18] 2025-10-09 03:57:36,747 | INFO     | [payload] execute_payloads thread has finished
[2025-10-09 05:58:18] 2025-10-09 03:57:36,748 | INFO     | [payload] failed_post thread has finished
[2025-10-09 05:58:18] 2025-10-09 03:57:36,797 | INFO     | [job] control thread has finished
[2025-10-09 05:58:18] 2025-10-09 03:57:39,879 | INFO     | [data] queue_monitor thread has finished
[2025-10-09 05:58:18] 2025-10-09 03:57:44,924 | INFO     | job.realtimelogging is not enabled
[2025-10-09 05:58:18] 2025-10-09 03:57:45,930 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-09 05:58:18] 2025-10-09 03:58:04,024 | INFO     | PID=1196289 has CPU usage=1.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-09 05:58:18] 2025-10-09 03:58:04,025 | INFO     | found 0 job(s) in 20 queues
[2025-10-09 05:58:18] 2025-10-09 03:58:04,025 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-09 05:58:18] 2025-10-09 03:58:04,025 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-09 05:58:18] 2025-10-09 03:58:12,307 | INFO     | [monitor] cgroup control has ended
[2025-10-09 05:58:18] 2025-10-09 03:58:13,090 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139831708985152)>', '<ExcThread(monitor, started 139830830814976)>']
[2025-10-09 05:58:18] 2025-10-09 03:58:14,078 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-09 05:58:18] 2025-10-09 03:58:14,079 | INFO     | [monitor] control thread has ended
[2025-10-09 05:58:18] 2025-10-09 03:58:18,116 | INFO     | all workflow threads have been joined
[2025-10-09 05:58:18] 2025-10-09 03:58:18,116 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-09 05:58:18] 2025-10-09 03:58:18,117 | INFO     | traces error code: 0
[2025-10-09 05:58:18] 2025-10-09 03:58:18,117 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-09 05:58:18] 2025-10-09 03:58:18,159 [wrapper] ==== pilot stdout END ====
[2025-10-09 05:58:18] 2025-10-09 03:58:18,161 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-09 05:58:18] 2025-10-09 03:58:18,163 [wrapper] pilotpid: 1196289
[2025-10-09 05:58:18] 2025-10-09 03:58:18,165 [wrapper] Pilot exit status: 0
[2025-10-09 05:58:18] 2025-10-09 03:58:18,171 [wrapper] pandaids: 6836605886
[2025-10-09 05:58:18] 2025-10-09 03:58:18,185 [wrapper] cleanup supervisor_pilot 1217685 1196290
[2025-10-09 05:58:18] 2025-10-09 03:58:18,187 [wrapper] Test setup, not cleaning
[2025-10-09 05:58:18] 2025-10-09 03:58:18,189 [wrapper] apfmon messages muted
[2025-10-09 05:58:18] 2025-10-09 03:58:18,191 [wrapper] ==== wrapper stdout END ====
[2025-10-09 05:58:18] 2025-10-09 03:58:18,193 [wrapper] ==== wrapper stderr END ====
[2025-10-09 05:58:18]  *** Error codes and diagnostics ***
[2025-10-09 05:58:18]     "exeErrorCode": 0,
[2025-10-09 05:58:18]     "exeErrorDiag": "",
[2025-10-09 05:58:18]     "pilotErrorCode": 0,
[2025-10-09 05:58:18]     "pilotErrorDiag": "",
[2025-10-09 05:58:18]  *** Listing of results directory ***
[2025-10-09 05:58:18] total 405828
[2025-10-09 05:58:18] -rw-r--r-- 1 boinc boinc    557409 Oct  9 01:22 pilot3.tar.gz
[2025-10-09 05:58:18] -rw-r--r-- 1 boinc boinc      5112 Oct  9 01:22 queuedata.json
[2025-10-09 05:58:18] -rwx------ 1 boinc boinc     36292 Oct  9 01:23 runpilot2-wrapper.sh
[2025-10-09 05:58:18] -rw-r--r-- 1 boinc boinc       100 Oct  9 03:55 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-09 05:58:18] -rwxr-xr-x 1 boinc boinc      7986 Oct  9 03:55 run_atlas
[2025-10-09 05:58:18] -rw-r--r-- 1 boinc boinc       105 Oct  9 03:55 job.xml
[2025-10-09 05:58:18] -rw-r--r-- 2 boinc boinc 219782748 Oct  9 03:55 EVNT.46676267._000447.pool.root.1
[2025-10-09 05:58:18] -rw-r--r-- 2 boinc boinc    569676 Oct  9 03:55 input.tar.gz
[2025-10-09 05:58:18] -rw-r--r-- 2 boinc boinc     15120 Oct  9 03:55 start_atlas.sh
[2025-10-09 05:58:18] drwxrwx--x 2 boinc boinc      4096 Oct  9 03:55 shared
[2025-10-09 05:58:18] -rw-r--r-- 1 boinc boinc         0 Oct  9 03:55 boinc_setup_complete
[2025-10-09 05:58:18] -rw-r--r-- 1 boinc boinc      6206 Oct  9 03:55 init_data.xml
[2025-10-09 05:58:18] -rw-r--r-- 1 boinc boinc         0 Oct  9 03:55 boinc_lockfile
[2025-10-09 05:58:18] -rw-r--r-- 1 boinc boinc      2546 Oct  9 03:55 pandaJob.out
[2025-10-09 05:58:18] -rw------- 1 boinc boinc    979290 Oct  9 03:56 agis_schedconf.cvmfs.json
[2025-10-09 05:58:18] -rw------- 1 boinc boinc   1560401 Oct  9 03:56 agis_ddmendpoints.agis.ALL.json
[2025-10-09 05:58:18] drwx------ 5 boinc boinc      4096 Oct  9 03:56 pilot3
[2025-10-09 05:58:18] -rw-r--r-- 1 boinc boinc       529 Oct  9 05:57 boinc_task_state.xml
[2025-10-09 05:58:18] -rw------- 1 boinc boinc 189270028 Oct  9 05:57 HITS.46676269._010970.pool.root.1
[2025-10-09 05:58:18] -rw------- 1 boinc boinc      1010 Oct  9 05:57 memory_monitor_summary.json
[2025-10-09 05:58:18] -rw------- 1 boinc boinc    255459 Oct  9 05:57 log.46676269._010970.job.log.tgz.1
[2025-10-09 05:58:18] -rw------- 1 boinc boinc      7739 Oct  9 05:57 heartbeat.json
[2025-10-09 05:58:18] -rw-r--r-- 1 boinc boinc      8192 Oct  9 05:58 boinc_mmap_file
[2025-10-09 05:58:18] -rw------- 1 boinc boinc        95 Oct  9 05:58 pilot_heartbeat.json
[2025-10-09 05:58:18] -rw-r--r-- 1 boinc boinc        27 Oct  9 05:58 wrapper_checkpoint.txt
[2025-10-09 05:58:18] -rw------- 1 boinc boinc      4824 Oct  9 05:58 pilotlog.txt
[2025-10-09 05:58:18] -rw------- 1 boinc boinc   1056866 Oct  9 05:58 log.46676269._010970.job.log.1
[2025-10-09 05:58:18] -rw------- 1 boinc boinc       357 Oct  9 05:58 output.list
[2025-10-09 05:58:18] -rw-r--r-- 1 boinc boinc       620 Oct  9 05:58 runtime_log
[2025-10-09 05:58:18] -rw------- 1 boinc boinc   1331200 Oct  9 05:58 result.tar.gz
[2025-10-09 05:58:18] -rw-r--r-- 1 boinc boinc      8777 Oct  9 05:58 runtime_log.err
[2025-10-09 05:58:18] -rw------- 1 boinc boinc       659 Oct  9 05:58 ikZLDmPgsQ8n9Rq4apOajLDm4fhM0noT9bVof3QYDmfCNMDm6WHXQn.diag
[2025-10-09 05:58:18] -rw-r--r-- 1 boinc boinc     10363 Oct  9 05:58 stderr.txt
[2025-10-09 05:58:18] HITS file was successfully produced:
[2025-10-09 05:58:18] -rw------- 1 boinc boinc 189270028 Oct  9 05:57 shared/HITS.pool.root.1
[2025-10-09 05:58:18]  *** Contents of shared directory: ***
[2025-10-09 05:58:18] total 401348
[2025-10-09 05:58:18] -rw-r--r-- 2 boinc boinc 219782748 Oct  9 03:55 ATLAS.root_0
[2025-10-09 05:58:18] -rw-r--r-- 2 boinc boinc    569676 Oct  9 03:55 input.tar.gz
[2025-10-09 05:58:18] -rw-r--r-- 2 boinc boinc     15120 Oct  9 03:55 start_atlas.sh
[2025-10-09 05:58:18] -rw------- 1 boinc boinc 189270028 Oct  9 05:57 HITS.pool.root.1
[2025-10-09 05:58:18] -rw------- 1 boinc boinc   1331200 Oct  9 05:58 result.tar.gz
05:58:20 (1192031): run_atlas exited; CPU time 14134.226115
05:58:20 (1192031): called boinc_finish(0)

</stderr_txt>
]]>

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