Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
21:49:21 (4186743): wrapper (7.7.26015): starting
21:49:21 (4186743): wrapper: running run_atlas (--nthreads 9)
[2025-10-08 21:49:21] Arguments: --nthreads 9
[2025-10-08 21:49:21] Threads: 9
[2025-10-08 21:49:21] Checking for CVMFS
[2025-10-08 21:49:21] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-08 21:49:21] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-08 21:49:21] Running cvmfs_config stat atlas.cern.ch
[2025-10-08 21:49:22] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-08 21:49:22] 2.13.2.0 3269412 30768 348668 151491 2 663 35017007 40960000 28348 16776704 0 370855697 99.822 170709368 37121 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-10-08 21:49:22] CVMFS is ok
[2025-10-08 21:49:22] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-08 21:49:22] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-08 21:49:22] Further information can be found at the LHC@home message board.
[2025-10-08 21:49:22] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-08 21:49:22] Checking for apptainer binary...
[2025-10-08 21:49:22] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-08 21:49:22] Running /usr/bin/apptainer --version
[2025-10-08 21:49:22] apptainer version 1.4.3-1.el9
[2025-10-08 21:49:22] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-08 21:49:22] c8-16-2.aglt2.org
[2025-10-08 21:49:22] apptainer works
[2025-10-08 21:49:22] Set ATHENA_PROC_NUMBER=9
[2025-10-08 21:49:22] Set ATHENA_CORE_NUMBER=9
[2025-10-08 21:49:22] Starting ATLAS job with PandaID=6836602374
[2025-10-08 21:49:22] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/9 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-08 22:25:51]  *** The last 200 lines of the pilot log: ***
[2025-10-08 22:25:51]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-10-08 22:25:51]  replicas=None
[2025-10-08 22:25:51]  scope=mc23_13p6TeV
[2025-10-08 22:25:51]  status=None
[2025-10-08 22:25:51]  status_code=0
[2025-10-08 22:25:51]  storage_token=
[2025-10-08 22:25:51]  surl=/tmp/boinchome/slots/9/PanDA_Pilot-6836602374/log.46676269._009009.job.log.tgz.1
[2025-10-08 22:25:51]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/d7/e6/log.46676269._009009.job.log.tgz.1
[2025-10-08 22:25:51]  workdir=None
[2025-10-08 22:25:51] ]
[2025-10-08 22:25:51] 2025-10-09 02:25:14,132 | INFO     | transferring file log.46676269._009009.job.log.tgz.1 from /tmp/boinchome/slots/9/PanDA_Pilot-6836602374/log.46676269._009009.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-10-08 22:25:51] 2025-10-09 02:25:14,132 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/9/PanDA_Pilot-6836602374/log.46676269._009009.job.log.tgz.1 /tmp/boinchome/slots/9/log.46676269._009009.job
[2025-10-08 22:25:51] 2025-10-09 02:25:14,148 | INFO     | adding to output.list: log.46676269._009009.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/d7/e6/log.46676269._009009.job.log.tg
[2025-10-08 22:25:51] 2025-10-09 02:25:14,149 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-08 22:25:51] 2025-10-09 02:25:14,149 | INFO     | summary of transferred files:
[2025-10-08 22:25:51] 2025-10-09 02:25:14,149 | INFO     |  -- lfn=log.46676269._009009.job.log.tgz.1, status_code=0, status=transferred
[2025-10-08 22:25:51] 2025-10-09 02:25:14,149 | INFO     | stage-out finished correctly
[2025-10-08 22:25:51] 2025-10-09 02:25:14,465 | INFO     | monitor loop #158: job 0:6836602374 is in state 'finished'
[2025-10-08 22:25:51] 2025-10-09 02:25:14,466 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-08 22:25:51] 2025-10-09 02:25:14,638 | INFO     | PID=4192741 has CPU usage=11.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-10-08 22:25:51] 2025-10-09 02:25:14,638 | INFO     | .. there are 33 such processes running
[2025-10-08 22:25:51] 2025-10-09 02:25:15,638 | INFO     | time since job start (2141s) is within the limit (172800.0s)
[2025-10-08 22:25:51] 2025-10-09 02:25:15,704 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-08 22:25:51] 2025-10-09 02:25:15,794 | INFO     | job 6836602374 has state=finished
[2025-10-08 22:25:51] 2025-10-09 02:25:15,794 | INFO     | preparing for final server update for job 6836602374 in state='finished'
[2025-10-08 22:25:51] 2025-10-09 02:25:15,794 | INFO     | this job has now completed (state=finished)
[2025-10-08 22:25:51] 2025-10-09 02:25:15,794 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-08 22:25:51] 2025-10-09 02:25:15,795 | INFO     | log transfer has been attempted: DONE
[2025-10-08 22:25:51] 2025-10-09 02:25:15,795 | INFO     | job 6836602374 has finished - writing final server update
[2025-10-08 22:25:51] 2025-10-09 02:25:15,795 | INFO     | total number of processed events: 400 (read)
[2025-10-08 22:25:51] 2025-10-09 02:25:15,795 | INFO     | executing command: lscpu
[2025-10-08 22:25:51] 2025-10-09 02:25:15,848 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-08 22:25:51] 2025-10-09 02:25:16,969 | INFO     | monitor loop #159: job 0:6836602374 is in state 'finished'
[2025-10-08 22:25:51] 2025-10-09 02:25:16,969 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-08 22:25:51] 2025-10-09 02:25:17,644 | INFO     | time since job start (2143s) is within the limit (172800.0s)
[2025-10-08 22:25:51] 2025-10-09 02:25:18,953 | INFO     | CPU arch script returned: x86-64-v4
[2025-10-08 22:25:51] 2025-10-09 02:25:18,957 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 3473.421796875006
[2025-10-08 22:25:51] 2025-10-09 02:25:18,978 | INFO     | using path: /tmp/boinchome/slots/9/PanDA_Pilot-6836602374/memory_monitor_summary.json (trf name=prmon)
[2025-10-08 22:25:51] 2025-10-09 02:25:18,979 | INFO     | extracted standard info from prmon json
[2025-10-08 22:25:51] 2025-10-09 02:25:18,979 | INFO     | extracted standard memory fields from prmon json
[2025-10-08 22:25:51] 2025-10-09 02:25:18,979 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-08 22:25:51] 2025-10-09 02:25:18,979 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-08 22:25:51] 2025-10-09 02:25:18,979 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-08 22:25:51] 2025-10-09 02:25:18,980 | INFO     | fitting pss+swap vs Time
[2025-10-08 22:25:51] 2025-10-09 02:25:18,980 | INFO     | sum of square deviations: 6798267.0
[2025-10-08 22:25:51] 2025-10-09 02:25:18,981 | INFO     | sum of deviations: -93860059.49999999
[2025-10-08 22:25:51] 2025-10-09 02:25:18,981 | INFO     | mean x: 1759975731.5
[2025-10-08 22:25:51] 2025-10-09 02:25:18,981 | INFO     | mean y: 2258688.1785714286
[2025-10-08 22:25:51] 2025-10-09 02:25:18,981 | INFO     | -- intersect: 24301308266.129246
[2025-10-08 22:25:51] 2025-10-09 02:25:18,981 | INFO     | intersect: 24301308266.129246
[2025-10-08 22:25:51] 2025-10-09 02:25:18,981 | INFO     | chi2: 0.00620148026081657
[2025-10-08 22:25:51] 2025-10-09 02:25:18,981 | INFO     | -- intersect: 24301308266.129246
[2025-10-08 22:25:51] 2025-10-09 02:25:18,981 | INFO     | current memory leak: -13.81 B/s (using 28 data points, chi2=0.01)
[2025-10-08 22:25:51] 2025-10-09 02:25:18,981 | INFO     | could have reported an average CPU frequency of 3664 MHz (5 samples)
[2025-10-08 22:25:51] 2025-10-09 02:25:18,981 | INFO     | ..............................
[2025-10-08 22:25:51] 2025-10-09 02:25:18,981 | INFO     | . Timing measurements:
[2025-10-08 22:25:51] 2025-10-09 02:25:18,981 | INFO     | . get job = 0 s
[2025-10-08 22:25:51] 2025-10-09 02:25:18,981 | INFO     | . initial setup = 2 s
[2025-10-08 22:25:51] 2025-10-09 02:25:18,981 | INFO     | . payload setup = 6 s
[2025-10-08 22:25:51] 2025-10-09 02:25:18,981 | INFO     | . stage-in = 0 s
[2025-10-08 22:25:51] 2025-10-09 02:25:18,981 | INFO     | . payload execution = 2113 s
[2025-10-08 22:25:51] 2025-10-09 02:25:18,981 | INFO     | . stage-out = 0 s
[2025-10-08 22:25:51] 2025-10-09 02:25:18,981 | INFO     | . log creation = 0 s
[2025-10-08 22:25:51] 2025-10-09 02:25:18,981 | INFO     | ..............................
[2025-10-08 22:25:51] 2025-10-09 02:25:19,013 | INFO     | 
[2025-10-08 22:25:51] 2025-10-09 02:25:19,014 | INFO     | job summary report
[2025-10-08 22:25:51] 2025-10-09 02:25:19,014 | INFO     | --------------------------------------------------
[2025-10-08 22:25:51] 2025-10-09 02:25:19,014 | INFO     | PanDA job id: 6836602374
[2025-10-08 22:25:51] 2025-10-09 02:25:19,014 | INFO     | task id: 46676269
[2025-10-08 22:25:51] 2025-10-09 02:25:19,014 | INFO     | errors: (none)
[2025-10-08 22:25:51] 2025-10-09 02:25:19,014 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-08 22:25:51] 2025-10-09 02:25:19,014 | INFO     | pilot state: finished 
[2025-10-08 22:25:51] 2025-10-09 02:25:19,014 | INFO     | transexitcode: 0
[2025-10-08 22:25:51] 2025-10-09 02:25:19,014 | INFO     | exeerrorcode: 0
[2025-10-08 22:25:51] 2025-10-09 02:25:19,014 | INFO     | exeerrordiag: 
[2025-10-08 22:25:51] 2025-10-09 02:25:19,014 | INFO     | exitcode: 0
[2025-10-08 22:25:51] 2025-10-09 02:25:19,015 | INFO     | exitmsg: OK
[2025-10-08 22:25:51] 2025-10-09 02:25:19,015 | INFO     | cpuconsumptiontime: 17377 s
[2025-10-08 22:25:51] 2025-10-09 02:25:19,015 | INFO     | nevents: 400
[2025-10-08 22:25:51] 2025-10-09 02:25:19,015 | INFO     | neventsw: 0
[2025-10-08 22:25:51] 2025-10-09 02:25:19,015 | INFO     | pid: 11275
[2025-10-08 22:25:51] 2025-10-09 02:25:19,015 | INFO     | pgrp: 11275
[2025-10-08 22:25:51] 2025-10-09 02:25:19,015 | INFO     | corecount: 9
[2025-10-08 22:25:51] 2025-10-09 02:25:19,015 | INFO     | event service: False
[2025-10-08 22:25:51] 2025-10-09 02:25:19,015 | INFO     | sizes: {0: 2348681, 1: 2348880, 6: 2349142, 11: 2349170, 2124: 2383285, 2126: 2383285, 2129: 2383639}
[2025-10-08 22:25:51] 2025-10-09 02:25:19,015 | INFO     | --------------------------------------------------
[2025-10-08 22:25:51] 2025-10-09 02:25:19,015 | INFO     | 
[2025-10-08 22:25:51] 2025-10-09 02:25:19,015 | INFO     | executing command: ls -lF /tmp/boinchome/slots/9
[2025-10-08 22:25:51] 2025-10-09 02:25:19,026 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-08 22:25:51] 2025-10-09 02:25:19,026 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-08 22:25:51] 2025-10-09 02:25:19,026 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-08 22:25:51] 2025-10-09 02:25:19,026 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-08 22:25:51] 2025-10-09 02:25:19,027 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-08 22:25:51] 2025-10-09 02:25:19,027 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-08 22:25:51] 2025-10-09 02:25:19,027 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-08 22:25:51] 2025-10-09 02:25:19,027 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-08 22:25:51] 2025-10-09 02:25:19,027 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-08 22:25:51] 2025-10-09 02:25:19,027 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-08 22:25:51] 2025-10-09 02:25:19,027 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-08 22:25:51] 2025-10-09 02:25:19,027 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-08 22:25:51] 2025-10-09 02:25:19,027 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-08 22:25:51] 2025-10-09 02:25:19,027 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-08 22:25:51] 2025-10-09 02:25:19,027 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-08 22:25:51] 2025-10-09 02:25:19,027 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-08 22:25:51] 2025-10-09 02:25:19,027 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-08 22:25:51] 2025-10-09 02:25:19,027 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-08 22:25:51] 2025-10-09 02:25:19,027 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-08 22:25:51] 2025-10-09 02:25:19,027 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-08 22:25:51] 2025-10-09 02:25:19,027 | INFO     | job 6836602374 has completed (purged errors)
[2025-10-08 22:25:51] 2025-10-09 02:25:19,027 | INFO     | overall cleanup function is called
[2025-10-08 22:25:51] 2025-10-09 02:25:20,031 | INFO     | --- collectZombieJob: --- 10, [11275]
[2025-10-08 22:25:51] 2025-10-09 02:25:20,031 | INFO     | zombie collector waiting for pid 11275
[2025-10-08 22:25:51] 2025-10-09 02:25:20,031 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-08 22:25:51] 2025-10-09 02:25:20,031 | INFO     | collected zombie processes
[2025-10-08 22:25:51] 2025-10-09 02:25:20,031 | INFO     | will attempt to kill all subprocesses of pid=11275
[2025-10-08 22:25:51] 2025-10-09 02:25:20,394 | INFO     | process IDs to be killed: [11275] (in reverse order)
[2025-10-08 22:25:51] 2025-10-09 02:25:20,546 | WARNING  | found no corresponding commands to process id(s)
[2025-10-08 22:25:51] 2025-10-09 02:25:20,547 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-08 22:25:51] 2025-10-09 02:25:20,576 | INFO     | did not find any defunct processes belonging to 11275
[2025-10-08 22:25:51] 2025-10-09 02:25:20,603 | INFO     | did not find any defunct processes belonging to 11275
[2025-10-08 22:25:51] 2025-10-09 02:25:20,603 | INFO     | ready for new job
[2025-10-08 22:25:51] 2025-10-09 02:25:20,603 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-08 22:25:51] 2025-10-09 02:25:20,604 | INFO     | ***************************************
[2025-10-08 22:25:51] 2025-10-09 02:25:20,604 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-08 22:25:51] 2025-10-09 02:25:20,604 | INFO     | ***************************************
[2025-10-08 22:25:51] 2025-10-09 02:25:20,604 | INFO     | 
[2025-10-08 22:25:51] 2025-10-09 02:25:20,621 | INFO     | architecture information:
[2025-10-08 22:25:51] 2025-10-09 02:25:20,622 | INFO     | executing command: cat /etc/os-release
[2025-10-08 22:25:51] 2025-10-09 02:25:20,634 | INFO     | cat /etc/os-release:
[2025-10-08 22:25:51] NAME="CentOS Linux"
[2025-10-08 22:25:51] VERSION="7 (Core)"
[2025-10-08 22:25:51] ID="centos"
[2025-10-08 22:25:51] ID_LIKE="rhel fedora"
[2025-10-08 22:25:51] VERSION_ID="7"
[2025-10-08 22:25:51] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-08 22:25:51] ANSI_COLOR="0;31"
[2025-10-08 22:25:51] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-08 22:25:51] HOME_URL="https://www.centos.org/"
[2025-10-08 22:25:51] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-08 22:25:51] 
[2025-10-08 22:25:51] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-08 22:25:51] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-08 22:25:51] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-08 22:25:51] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-08 22:25:51] 
[2025-10-08 22:25:51] 2025-10-09 02:25:20,634 | INFO     | ***************************************
[2025-10-08 22:25:51] 2025-10-09 02:25:21,137 | INFO     | executing command: df -mP /tmp/boinchome/slots/9
[2025-10-08 22:25:51] 2025-10-09 02:25:21,150 | INFO     | sufficient remaining disk space (173264601088 B)
[2025-10-08 22:25:51] 2025-10-09 02:25:21,150 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-08 22:25:51] 2025-10-09 02:25:21,150 | INFO     | current server update state: UPDATING_FINAL
[2025-10-08 22:25:51] 2025-10-09 02:25:21,150 | INFO     | update_server=False
[2025-10-08 22:25:51] 2025-10-09 02:25:21,150 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-08 22:25:51] 2025-10-09 02:25:21,151 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-08 22:25:51] 2025-10-09 02:25:21,151 | INFO     | aborting loop
[2025-10-08 22:25:51] 2025-10-09 02:25:21,757 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-08 22:25:51] 2025-10-09 02:25:22,156 | INFO     | [job] retrieve thread has finished
[2025-10-08 22:25:51] 2025-10-09 02:25:22,156 | INFO     | [job] job monitor thread has finished
[2025-10-08 22:25:51] 2025-10-09 02:25:22,181 | INFO     | all data control threads have been joined
[2025-10-08 22:25:51] 2025-10-09 02:25:22,190 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-08 22:25:51] 2025-10-09 02:25:22,241 | INFO     | [payload] execute_payloads thread has finished
[2025-10-08 22:25:51] 2025-10-09 02:25:22,367 | INFO     | [data] copytool_in thread has finished
[2025-10-08 22:25:51] 2025-10-09 02:25:22,593 | INFO     | all payload control threads have been joined
[2025-10-08 22:25:51] 2025-10-09 02:25:22,695 | INFO     | all job control threads have been joined
[2025-10-08 22:25:51] 2025-10-09 02:25:22,767 | INFO     | [payload] validate_post thread has finished
[2025-10-08 22:25:51] 2025-10-09 02:25:22,867 | INFO     | [job] validate thread has finished
[2025-10-08 22:25:51] 2025-10-09 02:25:22,977 | INFO     | [job] create_data_payload thread has finished
[2025-10-08 22:25:51] 2025-10-09 02:25:23,101 | INFO     | [payload] validate_pre thread has finished
[2025-10-08 22:25:51] 2025-10-09 02:25:23,186 | INFO     | [data] control thread has finished
[2025-10-08 22:25:51] 2025-10-09 02:25:23,354 | INFO     | [payload] failed_post thread has finished
[2025-10-08 22:25:51] 2025-10-09 02:25:23,599 | INFO     | [payload] control thread has finished
[2025-10-08 22:25:51] 2025-10-09 02:25:23,701 | INFO     | [job] control thread has finished
[2025-10-08 22:25:51] 2025-10-09 02:25:24,024 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-08 22:25:51] 2025-10-09 02:25:24,196 | INFO     | [data] copytool_out thread has finished
[2025-10-08 22:25:51] 2025-10-09 02:25:25,030 | INFO     | [job] queue monitor thread has finished
[2025-10-08 22:25:51] 2025-10-09 02:25:25,763 | INFO     | [data] queue_monitor thread has finished
[2025-10-08 22:25:51] 2025-10-09 02:25:31,900 | INFO     | job.realtimelogging is not enabled
[2025-10-08 22:25:51] 2025-10-09 02:25:32,905 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-08 22:25:51] 2025-10-09 02:25:36,802 | INFO     | [monitor] cgroup control has ended
[2025-10-08 22:25:51] 2025-10-09 02:25:38,063 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139751701952320)>', '<ExcThread(monitor, started 139750912550656)>']
[2025-10-08 22:25:51] 2025-10-09 02:25:43,088 | INFO     | all workflow threads have been joined
[2025-10-08 22:25:51] 2025-10-09 02:25:43,088 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-08 22:25:51] 2025-10-09 02:25:43,088 | INFO     | traces error code: 0
[2025-10-08 22:25:51] 2025-10-09 02:25:43,088 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-08 22:25:51] 2025-10-09 02:25:51,196 | INFO     | PID=4192741 has CPU usage=2.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-08 22:25:51] 2025-10-09 02:25:51,197 | INFO     | .. there are 33 such processes running
[2025-10-08 22:25:51] 2025-10-09 02:25:51,197 | INFO     | found 0 job(s) in 20 queues
[2025-10-08 22:25:51] 2025-10-09 02:25:51,197 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-08 22:25:51] 2025-10-09 02:25:51,197 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-08 22:25:51] 2025-10-09 02:25:51,197 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-08 22:25:51] 2025-10-09 02:25:51,197 | INFO     | [monitor] control thread has ended
[2025-10-08 22:25:51] 2025-10-09 02:25:51,334 [wrapper] ==== pilot stdout END ====
[2025-10-08 22:25:51] 2025-10-09 02:25:51,337 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-08 22:25:51] 2025-10-09 02:25:51,339 [wrapper] pilotpid: 4192741
[2025-10-08 22:25:51] 2025-10-09 02:25:51,341 [wrapper] Pilot exit status: 0
[2025-10-08 22:25:51] 2025-10-09 02:25:51,348 [wrapper] pandaids: 6836602374
[2025-10-08 22:25:51] 2025-10-09 02:25:51,452 [wrapper] cleanup supervisor_pilot  277920 4192742
[2025-10-08 22:25:51] 2025-10-09 02:25:51,454 [wrapper] Test setup, not cleaning
[2025-10-08 22:25:51] 2025-10-09 02:25:51,455 [wrapper] apfmon messages muted
[2025-10-08 22:25:51] 2025-10-09 02:25:51,457 [wrapper] ==== wrapper stdout END ====
[2025-10-08 22:25:51] 2025-10-09 02:25:51,458 [wrapper] ==== wrapper stderr END ====
[2025-10-08 22:25:51]  *** Error codes and diagnostics ***
[2025-10-08 22:25:51]     "exeErrorCode": 0,
[2025-10-08 22:25:51]     "exeErrorDiag": "",
[2025-10-08 22:25:51]     "pilotErrorCode": 0,
[2025-10-08 22:25:51]     "pilotErrorDiag": "",
[2025-10-08 22:25:51]  *** Listing of results directory ***
[2025-10-08 22:25:51] total 419948
[2025-10-08 22:25:51] -rw-r--r--. 1 boincer umatlas    557409 Oct  8 18:57 pilot3.tar.gz
[2025-10-08 22:25:51] -rw-r--r--. 1 boincer umatlas      5112 Oct  8 19:01 queuedata.json
[2025-10-08 22:25:51] -rwx------. 1 boincer umatlas     36292 Oct  8 19:01 runpilot2-wrapper.sh
[2025-10-08 22:25:51] -rw-r--r--. 1 boincer umatlas       100 Oct  8 21:49 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-08 22:25:51] -rwxr-xr-x. 1 boincer umatlas      7986 Oct  8 21:49 run_atlas
[2025-10-08 22:25:51] -rw-r--r--. 1 boincer umatlas       105 Oct  8 21:49 job.xml
[2025-10-08 22:25:51] -rw-r--r--. 2 boincer umatlas 224044104 Oct  8 21:49 EVNT.46676267._000361.pool.root.1
[2025-10-08 22:25:51] -rw-r--r--. 2 boincer umatlas    569679 Oct  8 21:49 input.tar.gz
[2025-10-08 22:25:51] -rw-r--r--. 2 boincer umatlas     15120 Oct  8 21:49 start_atlas.sh
[2025-10-08 22:25:51] drwxrwx--x. 2 boincer umatlas      4096 Oct  8 21:49 shared
[2025-10-08 22:25:51] -rw-r--r--. 1 boincer umatlas         0 Oct  8 21:49 boinc_lockfile
[2025-10-08 22:25:51] -rw-r--r--. 1 boincer umatlas      2548 Oct  8 21:49 pandaJob.out
[2025-10-08 22:25:51] -rw-------. 1 boincer umatlas    979290 Oct  8 21:49 agis_schedconf.cvmfs.json
[2025-10-08 22:25:51] -rw-------. 1 boincer umatlas   1560401 Oct  8 21:49 agis_ddmendpoints.agis.ALL.json
[2025-10-08 22:25:51] drwx------. 5 boincer umatlas      4096 Oct  8 21:49 pilot3
[2025-10-08 22:25:51] -rw-r--r--. 1 boincer umatlas      7162 Oct  8 22:18 init_data.xml
[2025-10-08 22:25:51] -rw-------. 1 boincer umatlas 200772580 Oct  8 22:24 HITS.46676269._009009.pool.root.1
[2025-10-08 22:25:51] -rw-r--r--. 1 boincer umatlas       529 Oct  8 22:24 boinc_task_state.xml
[2025-10-08 22:25:51] -rw-------. 1 boincer umatlas        95 Oct  8 22:25 pilot_heartbeat.json
[2025-10-08 22:25:51] -rw-------. 1 boincer umatlas      1034 Oct  8 22:25 memory_monitor_summary.json
[2025-10-08 22:25:51] -rw-------. 1 boincer umatlas    308776 Oct  8 22:25 log.46676269._009009.job.log.tgz.1
[2025-10-08 22:25:51] -rw-------. 1 boincer umatlas      7772 Oct  8 22:25 heartbeat.json
[2025-10-08 22:25:51] -rw-r--r--. 1 boincer umatlas        27 Oct  8 22:25 wrapper_checkpoint.txt
[2025-10-08 22:25:51] -rw-r--r--. 1 boincer umatlas      8192 Oct  8 22:25 boinc_mmap_file
[2025-10-08 22:25:51] -rw-------. 1 boincer umatlas       823 Oct  8 22:25 pilotlog.txt
[2025-10-08 22:25:51] -rw-------. 1 boincer umatlas    342813 Oct  8 22:25 log.46676269._009009.job.log.1
[2025-10-08 22:25:51] -rw-------. 1 boincer umatlas       357 Oct  8 22:25 output.list
[2025-10-08 22:25:51] -rw-r--r--. 1 boincer umatlas       620 Oct  8 22:25 runtime_log
[2025-10-08 22:25:51] -rw-------. 1 boincer umatlas    675840 Oct  8 22:25 result.tar.gz
[2025-10-08 22:25:51] -rw-------. 1 boincer umatlas       650 Oct  8 22:25 y9fKDmaLsQ8n9Rq4apOajLDm4fhM0noT9bVof3QYDmzzMMDmvCKoym.diag
[2025-10-08 22:25:51] -rw-r--r--. 1 boincer umatlas      8698 Oct  8 22:25 runtime_log.err
[2025-10-08 22:25:51] -rw-r--r--. 1 boincer umatlas     21908 Oct  8 22:25 stderr.txt
[2025-10-08 22:25:51] HITS file was successfully produced:
[2025-10-08 22:25:51] -rw-------. 1 boincer umatlas 200772580 Oct  8 22:24 shared/HITS.pool.root.1
[2025-10-08 22:25:51]  *** Contents of shared directory: ***
[2025-10-08 22:25:51] total 416108
[2025-10-08 22:25:51] -rw-r--r--. 2 boincer umatlas 224044104 Oct  8 21:49 ATLAS.root_0
[2025-10-08 22:25:51] -rw-r--r--. 2 boincer umatlas    569679 Oct  8 21:49 input.tar.gz
[2025-10-08 22:25:51] -rw-r--r--. 2 boincer umatlas     15120 Oct  8 21:49 start_atlas.sh
[2025-10-08 22:25:51] -rw-------. 1 boincer umatlas 200772580 Oct  8 22:24 HITS.pool.root.1
[2025-10-08 22:25:51] -rw-------. 1 boincer umatlas    675840 Oct  8 22:25 result.tar.gz
22:25:53 (4186743): run_atlas exited; CPU time 17432.915516
22:25:53 (4186743): called boinc_finish(0)

</stderr_txt>
]]>

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