Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
17:06:16 (3721289): wrapper (7.7.26015): starting
17:06:16 (3721289): wrapper: running run_atlas (--nthreads 8)
[2025-10-09 17:06:16] Arguments: --nthreads 8
[2025-10-09 17:06:16] Threads: 8
[2025-10-09 17:06:16] Checking for CVMFS
[2025-10-09 17:06:17] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-09 17:06:18] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-09 17:06:18] Running cvmfs_config stat atlas.cern.ch
[2025-10-09 17:06:20] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-09 17:06:20] 2.13.2.0 1270615 125459 620564 151522 3 337 12765130 21042177 27593 16776704 0 77366578 99.362 121513386 29563 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-10-09 17:06:20] CVMFS is ok
[2025-10-09 17:06:20] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-09 17:06:20] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-09 17:06:20] Further information can be found at the LHC@home message board.
[2025-10-09 17:06:20] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-09 17:06:20] Checking for apptainer binary...
[2025-10-09 17:06:20] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-09 17:06:20] Running /usr/bin/apptainer --version
[2025-10-09 17:06:20] apptainer version 1.4.3-1.el9
[2025-10-09 17:06:20] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-09 17:06:22] c-16-12.aglt2.org
[2025-10-09 17:06:22] apptainer works
[2025-10-09 17:06:22] Set ATHENA_PROC_NUMBER=8
[2025-10-09 17:06:22] Set ATHENA_CORE_NUMBER=8
[2025-10-09 17:06:22] Starting ATLAS job with PandaID=6836604853
[2025-10-09 17:06:22] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-10 16:01:47]  *** The last 200 lines of the pilot log: ***
[2025-10-10 16:01:48] 2025-10-10 18:06:42,680 | INFO     | mean y: 2027874.0519059205
[2025-10-10 16:01:48] 2025-10-10 18:06:42,681 | INFO     | -- intersect: 2125698979.338547
[2025-10-10 16:01:48] 2025-10-10 18:06:42,681 | INFO     | intersect: 2125698979.338547
[2025-10-10 16:01:48] 2025-10-10 18:06:42,683 | INFO     | chi2: 10.012709097076627
[2025-10-10 16:01:48] 2025-10-10 18:06:42,741 | INFO     | sum of square deviations: 574222187601.4075
[2025-10-10 16:01:48] 2025-10-10 18:06:42,912 | INFO     | time since job start (75499s) is within the limit (172800.0s)
[2025-10-10 16:01:48] 2025-10-10 18:06:43,709 | INFO     | sum of deviations: -392574861527.0454
[2025-10-10 16:01:48] 2025-10-10 18:06:43,748 | INFO     | mean x: 1760081736.684039
[2025-10-10 16:01:48] 2025-10-10 18:06:43,748 | INFO     | mean y: 2034560.283387622
[2025-10-10 16:01:48] 2025-10-10 18:06:43,748 | INFO     | -- intersect: 1205338540.8231404
[2025-10-10 16:01:48] 2025-10-10 18:06:43,748 | INFO     | intersect: 1205338540.8231404
[2025-10-10 16:01:48] 2025-10-10 18:06:43,750 | INFO     | chi2: 6.710287841801634
[2025-10-10 16:01:48] 2025-10-10 18:06:43,750 | INFO     | current chi2=6.710287841801634 (change=32.982295033810466 %)
[2025-10-10 16:01:48] 2025-10-10 18:06:43,784 | INFO     | sum of square deviations: 567236767658.2307
[2025-10-10 16:01:48] 2025-10-10 18:06:44,140 | INFO     | sum of deviations: -276264251487.9899
[2025-10-10 16:01:48] 2025-10-10 18:06:44,140 | INFO     | mean x: 1760081584.1847916
[2025-10-10 16:01:48] 2025-10-10 18:06:44,141 | INFO     | mean y: 2037096.0973017171
[2025-10-10 16:01:48] 2025-10-10 18:06:44,141 | INFO     | -- intersect: 859258717.0088345
[2025-10-10 16:01:48] 2025-10-10 18:06:44,141 | INFO     | intersect: 859258717.0088345
[2025-10-10 16:01:48] 2025-10-10 18:06:44,168 | INFO     | chi2: 5.800045066484306
[2025-10-10 16:01:48] 2025-10-10 18:06:44,168 | INFO     | current chi2=5.800045066484306 (change=13.564884201345054 %)
[2025-10-10 16:01:48] 2025-10-10 18:06:44,168 | INFO     | right removable region: 1222
[2025-10-10 16:01:48] 2025-10-10 18:06:44,170 | INFO     | sum of square deviations: 574221375263.038
[2025-10-10 16:01:48] 2025-10-10 18:06:44,590 | INFO     | sum of deviations: -974798367359.464
[2025-10-10 16:01:48] 2025-10-10 18:06:44,591 | INFO     | mean x: 1760082041.6848533
[2025-10-10 16:01:48] 2025-10-10 18:06:44,591 | INFO     | mean y: 2033792.453583062
[2025-10-10 16:01:48] 2025-10-10 18:06:44,591 | INFO     | -- intersect: 2989949559.029099
[2025-10-10 16:01:48] 2025-10-10 18:06:44,591 | INFO     | intersect: 2989949559.029099
[2025-10-10 16:01:48] 2025-10-10 18:06:44,593 | INFO     | chi2: 7.2595586362557
[2025-10-10 16:01:48] 2025-10-10 18:06:44,593 | INFO     | current chi2=7.2595586362557 (change=27.49655896449397 %)
[2025-10-10 16:01:48] 2025-10-10 18:06:44,635 | INFO     | sum of square deviations: 567235742001.4951
[2025-10-10 16:01:48] 2025-10-10 18:06:44,990 | INFO     | time since job start (75501s) is within the limit (172800.0s)
[2025-10-10 16:01:48] 2025-10-10 18:06:45,694 | INFO     | sum of deviations: -1090337946977.2537
[2025-10-10 16:01:48] 2025-10-10 18:06:45,694 | INFO     | mean x: 1760082194.1864269
[2025-10-10 16:01:48] 2025-10-10 18:06:45,694 | INFO     | mean y: 2036314.0449713818
[2025-10-10 16:01:48] 2025-10-10 18:06:45,695 | INFO     | -- intersect: 3385258251.627653
[2025-10-10 16:01:48] 2025-10-10 18:06:45,695 | INFO     | intersect: 3385258251.627653
[2025-10-10 16:01:48] 2025-10-10 18:06:45,696 | INFO     | chi2: 6.733876834025095
[2025-10-10 16:01:48] 2025-10-10 18:06:45,697 | INFO     | current chi2=6.733876834025095 (change=7.241236397006895 %)
[2025-10-10 16:01:48] 2025-10-10 18:06:45,697 | INFO     | left removable region: 20
[2025-10-10 16:01:48] 2025-10-10 18:06:45,703 | INFO     | sum of square deviations: 538515101582.97864
[2025-10-10 16:01:48] 2025-10-10 18:06:45,791 | INFO     | monitor loop #2701: job 0:6836604853 is in state 'finished'
[2025-10-10 16:01:48] 2025-10-10 18:06:45,791 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-10 16:01:48] 2025-10-10 18:06:46,568 | INFO     | sum of deviations: -734193412010.402
[2025-10-10 16:01:48] 2025-10-10 18:06:46,569 | INFO     | mean x: 1760082163.6988354
[2025-10-10 16:01:48] 2025-10-10 18:06:46,569 | INFO     | mean y: 2047461.3552412644
[2025-10-10 16:01:48] 2025-10-10 18:06:46,569 | INFO     | -- intersect: 2401684398.900957
[2025-10-10 16:01:48] 2025-10-10 18:06:46,569 | INFO     | intersect: 2401684398.900957
[2025-10-10 16:01:48] 2025-10-10 18:06:46,606 | INFO     | chi2: 2.3052817370620793
[2025-10-10 16:01:48] 2025-10-10 18:06:46,606 | INFO     | -- intersect: 2401684398.900957
[2025-10-10 16:01:48] 2025-10-10 18:06:46,607 | INFO     | current memory leak: -1.36 B/s (using 1202 data points, chi2=2.31)
[2025-10-10 16:01:48] 2025-10-10 18:06:46,608 | INFO     | could have reported an average CPU frequency of 2900 MHz (43 samples)
[2025-10-10 16:01:48] 2025-10-10 18:06:46,609 | INFO     | ..............................
[2025-10-10 16:01:48] 2025-10-10 18:06:46,609 | INFO     | . Timing measurements:
[2025-10-10 16:01:48] 2025-10-10 18:06:46,609 | INFO     | . get job = 2 s
[2025-10-10 16:01:48] 2025-10-10 18:06:46,609 | INFO     | . initial setup = 22 s
[2025-10-10 16:01:48] 2025-10-10 18:06:46,609 | INFO     | . payload setup = 59 s
[2025-10-10 16:01:48] 2025-10-10 18:06:46,658 | INFO     | . stage-in = 1 s
[2025-10-10 16:01:48] 2025-10-10 18:06:46,658 | INFO     | . payload execution = 75205 s
[2025-10-10 16:01:48] 2025-10-10 18:06:46,658 | INFO     | . stage-out = 32 s
[2025-10-10 16:01:48] 2025-10-10 18:06:46,658 | INFO     | . log creation = 5 s
[2025-10-10 16:01:48] 2025-10-10 18:06:46,658 | INFO     | ..............................
[2025-10-10 16:01:48] 2025-10-10 18:06:47,120 | INFO     | time since job start (75504s) is within the limit (172800.0s)
[2025-10-10 16:01:48] 2025-10-10 18:06:50,512 | INFO     | 
[2025-10-10 16:01:48] 2025-10-10 18:06:50,512 | INFO     | job summary report
[2025-10-10 16:01:48] 2025-10-10 18:06:50,512 | INFO     | --------------------------------------------------
[2025-10-10 16:01:48] 2025-10-10 18:06:50,512 | INFO     | PanDA job id: 6836604853
[2025-10-10 16:01:48] 2025-10-10 18:06:50,513 | INFO     | task id: 46676269
[2025-10-10 16:01:48] 2025-10-10 18:06:50,513 | INFO     | errors: (none)
[2025-10-10 16:01:48] 2025-10-10 18:06:50,513 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-10 16:01:48] 2025-10-10 18:06:50,513 | INFO     | pilot state: finished 
[2025-10-10 16:01:48] 2025-10-10 18:06:50,513 | INFO     | transexitcode: 0
[2025-10-10 16:01:48] 2025-10-10 18:06:50,513 | INFO     | exeerrorcode: 0
[2025-10-10 16:01:48] 2025-10-10 18:06:50,514 | INFO     | exeerrordiag: 
[2025-10-10 16:01:48] 2025-10-10 18:06:50,514 | INFO     | exitcode: 0
[2025-10-10 16:01:48] 2025-10-10 18:06:50,514 | INFO     | exitmsg: OK
[2025-10-10 16:01:48] 2025-10-10 18:06:50,514 | INFO     | cpuconsumptiontime: 86035 s
[2025-10-10 16:01:48] 2025-10-10 18:06:50,514 | INFO     | nevents: 400
[2025-10-10 16:01:48] 2025-10-10 18:06:50,514 | INFO     | neventsw: 0
[2025-10-10 16:01:48] 2025-10-10 18:06:50,514 | INFO     | pid: 3739870
[2025-10-10 16:01:48] 2025-10-10 18:06:50,515 | INFO     | pgrp: 3739870
[2025-10-10 16:01:48] 2025-10-10 18:06:50,515 | INFO     | corecount: 8
[2025-10-10 16:01:48] 2025-10-10 18:06:50,515 | INFO     | event service: False
[2025-10-10 16:01:48] 2025-10-10 18:06:50,515 | INFO     | sizes: {0: 2348027, 1: 2348712, 2: 2348712, 3: 2348911, 4: 2348939, 5: 2348967, 17: 2349151, 28: 2349179, 39: 2349207, 51: 2349235, 54: 2349525, 62: 2349833, 75272
[2025-10-10 16:01:48] 2025-10-10 18:06:50,515 | INFO     | --------------------------------------------------
[2025-10-10 16:01:48] 2025-10-10 18:06:50,541 | INFO     | 
[2025-10-10 16:01:48] 2025-10-10 18:06:50,541 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-10-10 16:01:48] 2025-10-10 18:06:50,972 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-10 16:01:48] 2025-10-10 18:06:50,973 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-10 16:01:48] 2025-10-10 18:06:50,973 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-10 16:01:48] 2025-10-10 18:06:50,973 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-10 16:01:48] 2025-10-10 18:06:50,973 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-10 16:01:48] 2025-10-10 18:06:50,973 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-10 16:01:48] 2025-10-10 18:06:50,973 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-10 16:01:48] 2025-10-10 18:06:50,974 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-10 16:01:48] 2025-10-10 18:06:50,974 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-10 16:01:48] 2025-10-10 18:06:50,974 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-10 16:01:48] 2025-10-10 18:06:50,974 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-10 16:01:48] 2025-10-10 18:06:50,974 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-10 16:01:48] 2025-10-10 18:06:50,974 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-10 16:01:48] 2025-10-10 18:06:50,975 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-10 16:01:48] 2025-10-10 18:06:50,975 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-10 16:01:48] 2025-10-10 18:06:50,975 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-10 16:01:48] 2025-10-10 18:06:50,975 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-10 16:01:48] 2025-10-10 18:06:50,975 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-10 16:01:48] 2025-10-10 18:06:51,004 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-10 16:01:48] 2025-10-10 18:06:51,004 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-10 16:01:48] 2025-10-10 18:06:51,004 | INFO     | job 6836604853 has completed (purged errors)
[2025-10-10 16:01:48] 2025-10-10 18:06:51,005 | INFO     | overall cleanup function is called
[2025-10-10 16:01:48] 2025-10-10 18:06:52,047 | INFO     | PID=3726072 has CPU usage=5.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-10 16:01:48] 2025-10-10 18:06:52,048 | INFO     | .. there are 43 such processes running
[2025-10-10 16:01:48] 2025-10-10 18:06:52,063 | INFO     | --- collectZombieJob: --- 10, [3739870]
[2025-10-10 16:01:48] 2025-10-10 18:06:52,063 | INFO     | zombie collector waiting for pid 3739870
[2025-10-10 16:01:48] 2025-10-10 18:06:52,063 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-10 16:01:48] 2025-10-10 18:06:52,063 | INFO     | collected zombie processes
[2025-10-10 16:01:48] 2025-10-10 18:06:52,063 | INFO     | will attempt to kill all subprocesses of pid=3739870
[2025-10-10 16:01:48] 2025-10-10 18:06:54,360 | INFO     | process IDs to be killed: [3739870] (in reverse order)
[2025-10-10 16:01:48] 2025-10-10 18:06:56,431 | WARNING  | found no corresponding commands to process id(s)
[2025-10-10 16:01:48] 2025-10-10 18:06:56,431 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-10 16:01:48] 2025-10-10 18:06:58,127 | INFO     | did not find any defunct processes belonging to 3739870
[2025-10-10 16:01:48] 2025-10-10 18:06:58,574 | INFO     | did not find any defunct processes belonging to 3739870
[2025-10-10 16:01:48] 2025-10-10 18:06:58,575 | INFO     | ready for new job
[2025-10-10 16:01:48] 2025-10-10 18:06:58,575 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-10 16:01:48] 2025-10-10 18:06:58,600 | INFO     | ***************************************
[2025-10-10 16:01:48] 2025-10-10 18:06:58,618 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-10 16:01:48] 2025-10-10 18:06:58,618 | INFO     | ***************************************
[2025-10-10 16:01:48] 2025-10-10 18:06:58,618 | INFO     | 
[2025-10-10 16:01:48] 2025-10-10 18:06:58,644 | INFO     | architecture information:
[2025-10-10 16:01:48] 2025-10-10 18:06:58,648 | INFO     | executing command: cat /etc/os-release
[2025-10-10 16:01:48] 2025-10-10 18:06:58,781 | INFO     | cat /etc/os-release:
[2025-10-10 16:01:48] NAME="CentOS Linux"
[2025-10-10 16:01:48] VERSION="7 (Core)"
[2025-10-10 16:01:48] ID="centos"
[2025-10-10 16:01:48] ID_LIKE="rhel fedora"
[2025-10-10 16:01:48] VERSION_ID="7"
[2025-10-10 16:01:48] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-10 16:01:48] ANSI_COLOR="0;31"
[2025-10-10 16:01:48] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-10 16:01:48] HOME_URL="https://www.centos.org/"
[2025-10-10 16:01:48] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-10 16:01:48] 
[2025-10-10 16:01:48] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-10 16:01:48] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-10 16:01:48] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-10 16:01:48] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-10 16:01:48] 
[2025-10-10 16:01:48] 2025-10-10 18:06:58,782 | INFO     | ***************************************
[2025-10-10 16:01:48] 2025-10-10 18:06:59,287 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-10-10 16:01:48] 2025-10-10 18:06:59,512 | INFO     | sufficient remaining disk space (51907657728 B)
[2025-10-10 16:01:48] 2025-10-10 18:06:59,513 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-10 16:01:48] 2025-10-10 18:06:59,513 | INFO     | current server update state: UPDATING_FINAL
[2025-10-10 16:01:48] 2025-10-10 18:06:59,513 | INFO     | update_server=False
[2025-10-10 16:01:48] 2025-10-10 18:06:59,513 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-10 16:01:48] 2025-10-10 18:06:59,525 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-10 16:01:48] 2025-10-10 18:06:59,553 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-10 16:01:48] 2025-10-10 18:06:59,748 | INFO     | all data control threads have been joined
[2025-10-10 16:01:48] 2025-10-10 18:07:00,435 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-10 16:01:48] 2025-10-10 18:07:00,435 | INFO     | aborting loop
[2025-10-10 16:01:48] 2025-10-10 18:07:00,520 | INFO     | [job] retrieve thread has finished
[2025-10-10 16:01:48] 2025-10-10 18:07:00,572 | INFO     | [job] queue monitor thread has finished
[2025-10-10 16:01:48] 2025-10-10 18:07:00,769 | INFO     | all job control threads have been joined
[2025-10-10 16:01:48] 2025-10-10 18:07:00,790 | INFO     | all payload control threads have been joined
[2025-10-10 16:01:48] 2025-10-10 18:07:00,802 | INFO     | [payload] failed_post thread has finished
[2025-10-10 16:01:48] 2025-10-10 18:07:00,805 | INFO     | [data] control thread has finished
[2025-10-10 16:01:48] 2025-10-10 18:07:00,963 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-10 16:01:48] 2025-10-10 18:07:00,963 | INFO     | [payload] execute_payloads thread has finished
[2025-10-10 16:01:48] 2025-10-10 18:07:01,451 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-10 16:01:48] 2025-10-10 18:07:01,460 | INFO     | [job] validate thread has finished
[2025-10-10 16:01:48] 2025-10-10 18:07:01,461 | INFO     | [job] job monitor thread has finished
[2025-10-10 16:01:48] 2025-10-10 18:07:01,474 | INFO     | [payload] validate_pre thread has finished
[2025-10-10 16:01:48] 2025-10-10 18:07:01,486 | INFO     | [data] copytool_in thread has finished
[2025-10-10 16:01:48] 2025-10-10 18:07:01,775 | INFO     | [job] control thread has finished
[2025-10-10 16:01:48] 2025-10-10 18:07:01,808 | INFO     | [payload] control thread has finished
[2025-10-10 16:01:48] 2025-10-10 18:07:01,865 | INFO     | [job] create_data_payload thread has finished
[2025-10-10 16:01:48] 2025-10-10 18:07:02,094 | INFO     | [payload] validate_post thread has finished
[2025-10-10 16:01:48] 2025-10-10 18:07:02,970 | INFO     | [data] copytool_out thread has finished
[2025-10-10 16:01:48] 2025-10-10 18:07:03,565 | INFO     | [data] queue_monitor thread has finished
[2025-10-10 16:01:48] 2025-10-10 18:07:14,768 | INFO     | [monitor] cgroup control has ended
[2025-10-10 16:01:48] 2025-10-10 18:07:15,612 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139628803045184)>', '<ExcThread(monitor, started 139627558065920)>']
[2025-10-10 16:01:48] 2025-10-10 18:07:20,637 | INFO     | all workflow threads have been joined
[2025-10-10 16:01:48] 2025-10-10 18:07:20,641 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-10 16:01:48] 2025-10-10 18:07:20,641 | INFO     | traces error code: 0
[2025-10-10 16:01:48] 2025-10-10 18:07:20,641 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-10 16:01:48] 2025-10-10 18:07:29,272 | INFO     | PID=3726072 has CPU usage=4.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-10 16:01:48] 2025-10-10 18:07:29,273 | INFO     | .. there are 43 such processes running
[2025-10-10 16:01:48] 2025-10-10 18:07:29,274 | INFO     | found 0 job(s) in 20 queues
[2025-10-10 16:01:48] 2025-10-10 18:07:29,274 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-10 16:01:48] 2025-10-10 18:07:29,274 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-10 16:01:48] 2025-10-10 18:07:29,274 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-10 16:01:48] 2025-10-10 18:07:29,275 | INFO     | [monitor] control thread has ended
[2025-10-10 16:01:48] 2025-10-10 18:07:31,268 [wrapper] ==== pilot stdout END ====
[2025-10-10 16:01:48] 2025-10-10 18:07:31,311 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-10 16:01:48] 2025-10-10 18:07:31,368 [wrapper] pilotpid: 3726072
[2025-10-10 16:01:48] 2025-10-10 18:07:31,487 [wrapper] Pilot exit status: 0
[2025-10-10 16:01:48] 2025-10-10 18:07:31,833 [wrapper] pandaids: 6836604853
[2025-10-10 16:01:48] 2025-10-10 18:07:32,266 [wrapper] cleanup supervisor_pilot 3249004 3726073
[2025-10-10 16:01:48] 2025-10-10 18:07:32,298 [wrapper] Test setup, not cleaning
[2025-10-10 16:01:48] 2025-10-10 18:07:32,442 [wrapper] apfmon messages muted
[2025-10-10 16:01:48] 2025-10-10 18:07:32,471 [wrapper] ==== wrapper stdout END ====
[2025-10-10 16:01:48] 2025-10-10 18:07:32,581 [wrapper] ==== wrapper stderr END ====
[2025-10-10 16:01:48]  *** Error codes and diagnostics ***
[2025-10-10 16:01:48]     "exeErrorCode": 0,
[2025-10-10 16:01:48]     "exeErrorDiag": "",
[2025-10-10 16:01:48]     "pilotErrorCode": 0,
[2025-10-10 16:01:48]     "pilotErrorDiag": "",
[2025-10-10 16:01:48]  *** Listing of results directory ***
[2025-10-10 16:01:48] total 428624
[2025-10-10 16:01:48] -rw-r--r--. 1 boincer umatlas    557409 Oct  8 18:57 pilot3.tar.gz
[2025-10-10 16:01:48] -rwx------. 1 boincer umatlas     36292 Oct  8 19:15 runpilot2-wrapper.sh
[2025-10-10 16:01:48] -rw-r--r--. 1 boincer umatlas      5112 Oct  8 19:15 queuedata.json
[2025-10-10 16:01:48] -rw-r--r--. 1 boincer umatlas       100 Oct  9 17:06 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-10 16:01:48] -rwxr-xr-x. 1 boincer umatlas      7986 Oct  9 17:06 run_atlas
[2025-10-10 16:01:48] -rw-r--r--. 1 boincer umatlas       105 Oct  9 17:06 job.xml
[2025-10-10 16:01:48] -rw-r--r--. 2 boincer umatlas 218998915 Oct  9 17:06 EVNT.46676267._000423.pool.root.1
[2025-10-10 16:01:48] -rw-r--r--. 2 boincer umatlas    569675 Oct  9 17:06 input.tar.gz
[2025-10-10 16:01:48] -rw-r--r--. 2 boincer umatlas     15120 Oct  9 17:06 start_atlas.sh
[2025-10-10 16:01:48] drwxrwx--x. 2 boincer umatlas      4096 Oct  9 17:06 shared
[2025-10-10 16:01:48] -rw-r--r--. 1 boincer umatlas         0 Oct  9 17:06 boinc_lockfile
[2025-10-10 16:01:48] -rw-r--r--. 1 boincer umatlas      2549 Oct  9 17:06 pandaJob.out
[2025-10-10 16:01:48] -rw-------. 1 boincer umatlas    975454 Oct  9 17:08 agis_schedconf.cvmfs.json
[2025-10-10 16:01:48] drwx------. 5 boincer umatlas      4096 Oct  9 17:08 pilot3
[2025-10-10 16:01:48] -rw-------. 1 boincer umatlas 200587992 Oct 10 13:58 HITS.46676269._010441.pool.root.1
[2025-10-10 16:01:48] -rw-r--r--. 1 boincer umatlas       531 Oct 10 13:58 boinc_task_state.xml
[2025-10-10 16:01:48] -rw-------. 1 boincer umatlas      1037 Oct 10 14:04 memory_monitor_summary.json
[2025-10-10 16:01:48] -rw-------. 1 boincer umatlas   1560580 Oct 10 14:05 agis_ddmendpoints.agis.ALL.json
[2025-10-10 16:01:48] -rw-------. 1 boincer umatlas   1044204 Oct 10 14:05 log.46676269._010441.job.log.tgz.1
[2025-10-10 16:01:48] -rw-------. 1 boincer umatlas      7823 Oct 10 14:06 heartbeat.json
[2025-10-10 16:01:48] -rw-------. 1 boincer umatlas        95 Oct 10 14:07 pilot_heartbeat.json
[2025-10-10 16:01:48] -rw-------. 1 boincer umatlas       823 Oct 10 14:07 pilotlog.txt
[2025-10-10 16:01:48] -rw-------. 1 boincer umatlas   6671063 Oct 10 14:07 log.46676269._010441.job.log.1
[2025-10-10 16:01:48] -rw-------. 1 boincer umatlas       357 Oct 10 14:07 output.list
[2025-10-10 16:01:48] -rw-r--r--. 1 boincer umatlas       620 Oct 10 14:07 runtime_log
[2025-10-10 16:01:48] -rw-------. 1 boincer umatlas   7731200 Oct 10 14:07 result.tar.gz
[2025-10-10 16:01:48] -rw-r--r--. 1 boincer umatlas      8699 Oct 10 14:07 runtime_log.err
[2025-10-10 16:01:48] -rw-------. 1 boincer umatlas       657 Oct 10 14:07 kamMDmRYsQ8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmpkYNDmrL2fMn.diag
[2025-10-10 16:01:48] -rw-r--r--. 1 boincer umatlas      6524 Oct 10 16:01 init_data.xml
[2025-10-10 16:01:48] -rw-r--r--. 1 boincer umatlas      8192 Oct 10 16:01 boinc_mmap_file
[2025-10-10 16:01:48] -rw-r--r--. 1 boincer umatlas        28 Oct 10 16:01 wrapper_checkpoint.txt
[2025-10-10 16:01:48] -rw-r--r--. 1 boincer umatlas     21224 Oct 10 16:01 stderr.txt
[2025-10-10 16:01:48] HITS file was successfully produced:
[2025-10-10 16:01:48] -rw-------. 1 boincer umatlas 200587992 Oct 10 13:58 shared/HITS.pool.root.1
[2025-10-10 16:01:48]  *** Contents of shared directory: ***
[2025-10-10 16:01:48] total 417888
[2025-10-10 16:01:48] -rw-r--r--. 2 boincer umatlas 218998915 Oct  9 17:06 ATLAS.root_0
[2025-10-10 16:01:48] -rw-r--r--. 2 boincer umatlas    569675 Oct  9 17:06 input.tar.gz
[2025-10-10 16:01:48] -rw-r--r--. 2 boincer umatlas     15120 Oct  9 17:06 start_atlas.sh
[2025-10-10 16:01:48] -rw-------. 1 boincer umatlas 200587992 Oct 10 13:58 HITS.pool.root.1
[2025-10-10 16:01:48] -rw-------. 1 boincer umatlas   7731200 Oct 10 14:07 result.tar.gz
16:01:49 (3721289): run_atlas exited; CPU time 89234.666529
16:01:49 (3721289): called boinc_finish(0)

</stderr_txt>
]]>

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