Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
18:07:30 (1462066): wrapper (7.7.26015): starting
18:07:30 (1462066): wrapper: running run_atlas (--nthreads 12)
[2025-10-08 18:07:30] Arguments: --nthreads 12
[2025-10-08 18:07:30] Threads: 12
[2025-10-08 18:07:30] Checking for CVMFS
[2025-10-08 18:07:30] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-08 18:07:30] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-08 18:07:30] Running cvmfs_config stat atlas.cern.ch
[2025-10-08 18:07:31] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-08 18:07:31] 2.11.5.0 2671 26127 228796 151490 2 455 29678054 45568000 14792 130560 0 247353212 99.871 97545152 22209 http://cvmfs-s1bnl.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.162:3129 1
[2025-10-08 18:07:31] CVMFS is ok
[2025-10-08 18:07:31] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-08 18:07:31] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-08 18:07:31] Further information can be found at the LHC@home message board.
[2025-10-08 18:07:31] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-08 18:07:31] Checking for apptainer binary...
[2025-10-08 18:07:31] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-08 18:07:31] Running /usr/bin/apptainer --version
[2025-10-08 18:07:31] apptainer version 1.4.1-1.el9
[2025-10-08 18:07:31] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-08 18:07:31] wns0056.triumf.lcg
[2025-10-08 18:07:31] apptainer works
[2025-10-08 18:07:31] Set ATHENA_PROC_NUMBER=12
[2025-10-08 18:07:31] Set ATHENA_CORE_NUMBER=12
[2025-10-08 18:07:31] Starting ATLAS job with PandaID=6836606511
[2025-10-08 18:07:31] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-08 18:12:18]  *** The last 200 lines of the pilot log: ***
[2025-10-08 18:12:18] 2025-10-09 01:11:45,443 | WARNING  | wrong length of table data, x=[1759972148.0], y=[1851.0] (must be same and length>=4)
[2025-10-08 18:12:18] 2025-10-09 01:11:45,443 | INFO     | could have reported an average CPU frequency of 2551 MHz (4 samples)
[2025-10-08 18:12:18] 2025-10-09 01:11:45,443 | INFO     | ..............................
[2025-10-08 18:12:18] 2025-10-09 01:11:45,443 | INFO     | . Timing measurements:
[2025-10-08 18:12:18] 2025-10-09 01:11:45,443 | INFO     | . get job = 0 s
[2025-10-08 18:12:18] 2025-10-09 01:11:45,444 | INFO     | . initial setup = 4 s
[2025-10-08 18:12:18] 2025-10-09 01:11:45,444 | INFO     | . payload setup = 20 s
[2025-10-08 18:12:18] 2025-10-09 01:11:45,444 | INFO     | . stage-in = 0 s
[2025-10-08 18:12:18] 2025-10-09 01:11:45,444 | INFO     | . payload execution = 31 s
[2025-10-08 18:12:18] 2025-10-09 01:11:45,444 | INFO     | . stage-out = 0 s
[2025-10-08 18:12:18] 2025-10-09 01:11:45,444 | INFO     | . log creation = 0 s
[2025-10-08 18:12:18] 2025-10-09 01:11:45,444 | INFO     | ..............................
[2025-10-08 18:12:18] 2025-10-09 01:11:45,444 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-10-08 18:12:18] 2025-10-09 01:11:45,445 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6836606511/pilotlog.txt
[2025-10-08 18:12:18] 2025-10-09 01:11:45,456 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2025-10-08 18:12:18] - Log from pilotlog.txt -
[2025-10-08 18:12:18] 2025-10-09 01:11:45,440 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6836606511/memory_monitor_summary.json (trf name=prmon)
[2025-10-08 18:12:18] 2025-10-09 01:11:45,441 | INFO     | extracted standard info from prmon json
[2025-10-08 18:12:18] 2025-10-09 01:11:45,441 | INFO     | extracted standard memory fields from prmon json
[2025-10-08 18:12:18] 2025-10-09 01:11:45,441 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-08 18:12:18] 2025-10-09 01:11:45,441 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-08 18:12:18] 2025-10-09 01:11:45,441 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-08 18:12:18] 2025-10-09 01:11:45,443 | WARNING  | wrong length of table data, x=[1759972148.0], y=[1851.0] (must be same and length>=4)
[2025-10-08 18:12:18] 2025-10-09 01:11:45,443 | INFO     | could have reported an average CPU frequency of 2551 MHz (4 samples)
[2025-10-08 18:12:18] 2025-10-09 01:11:45,443 | INFO     | ..............................
[2025-10-08 18:12:18] 2025-10-09 01:11:45,443 | INFO     | . Timing measurements:
[2025-10-08 18:12:18] 2025-10-09 01:11:45,443 | INFO     | . get job = 0 s
[2025-10-08 18:12:18] 2025-10-09 01:11:45,444 | INFO     | . initial setup = 4 s
[2025-10-08 18:12:18] 2025-10-09 01:11:45,444 | INFO     | . payload setup = 20 s
[2025-10-08 18:12:18] 2025-10-09 01:11:45,444 | INFO     | . stage-in = 0 s
[2025-10-08 18:12:18] 2025-10-09 01:11:45,444 | INFO     | . payload execution = 31 s
[2025-10-08 18:12:18] 2025-10-09 01:11:45,444 | INFO     | . stage-out = 0 s
[2025-10-08 18:12:18] 2025-10-09 01:11:45,444 | INFO     | . log creation = 0 s
[2025-10-08 18:12:18] 2025-10-09 01:11:45,444 | INFO     | ..............................
[2025-10-08 18:12:18] 2025-10-09 01:11:45,444 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-10-08 18:12:18] 2025-10-09 01:11:45,445 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6836606511/pilotlog.txt
[2025-10-08 18:12:18] 2025-10-09 01:11:45,457 | WARNING  | 
[2025-10-08 18:12:18] [begin log extracts]
[2025-10-08 18:12:18] - Log from pilotlog.txt -
[2025-10-08 18:12:18] 2025-10-09 01:11:45,440 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6836606511/memory_monitor_summary.json (trf name=prmon)
[2025-10-08 18:12:18] 2025-10-09 01:11:45,441 | INFO     | extracted standard info from prmon json
[2025-10-08 18:12:18] 2025-10-09 01:11:45,441 | INFO     | extracted standard memory fields from prmon json
[2025-10-08 18:12:18] 2025-10-09 01:11:45,441 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-08 18:12:18] 2025-10-09 01:11:45,441 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-08 18:12:18] 2025-10-09 01:11:45,441 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-08 18:12:18] 2025-10-09 01:11:45,443 | WARNING  | wrong length of table data, x=[1759972148.0], y=[1851.0] (must be same and length>=4)
[2025-10-08 18:12:18] 2025-10-09 01:11:45,443 | INFO     | could have reported an average CPU frequency of 2551 MHz (4 samples)
[2025-10-08 18:12:18] 2025-10-09 01:11:45,443 | INFO     | ..............................
[2025-10-08 18:12:18] 2025-10-09 01:11:45,443 | INFO     | . Timing measurements:
[2025-10-08 18:12:18] 2025-10-09 01:11:45,443 | INFO     | . get job = 0 s
[2025-10-08 18:12:18] 2025-10-09 01:11:45,444 | INFO     | . initial setup = 4 s
[2025-10-08 18:12:18] 2025-10-09 01:11:45,444 | INFO     | . payload setup = 20 s
[2025-10-08 18:12:18] 2025-10-09 01:11:45,444 | INFO     | . stage-in = 0 s
[2025-10-08 18:12:18] 2025-10-09 01:11:45,444 | INFO     | . payload execution = 31 s
[2025-10-08 18:12:18] 2025-10-09 01:11:45,444 | INFO     | . stage-out = 0 s
[2025-10-08 18:12:18] 2025-10-09 01:11:45,444 | INFO     | . log creation = 0 s
[2025-10-08 18:12:18] 2025-10-09 01:11:45,444 | INFO     | ..............................
[2025-10-08 18:12:18] 2025-10-09 01:11:45,444 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-10-08 18:12:18] 2025-10-09 01:11:45,445 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6836606511/pilotlog.txt
[2025-10-08 18:12:18] [end log extracts]
[2025-10-08 18:12:18] 2025-10-09 01:11:45,457 | WARNING  | pilotErrorCodes = [1305] (will report primary/first error code)
[2025-10-08 18:12:18] 2025-10-09 01:11:45,458 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return c
[2025-10-08 18:12:18] 2025-10-09 01:11:45,528 | INFO     | 
[2025-10-08 18:12:18] 2025-10-09 01:11:45,528 | INFO     | job summary report
[2025-10-08 18:12:18] 2025-10-09 01:11:45,528 | INFO     | --------------------------------------------------
[2025-10-08 18:12:18] 2025-10-09 01:11:45,528 | INFO     | PanDA job id: 6836606511
[2025-10-08 18:12:18] 2025-10-09 01:11:45,528 | INFO     | task id: 46676269
[2025-10-08 18:12:18] 2025-10-09 01:11:45,528 | INFO     | error 1/1: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2025-10-08 18:09:23,194 CRITICAL Transform executor raised TransformValidationExceptio
[2025-10-08 18:12:18] 2025-10-09 01:11:45,528 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-08 18:12:18] 2025-10-09 01:11:45,528 | INFO     | pilot state: failed 
[2025-10-08 18:12:18] 2025-10-09 01:11:45,528 | INFO     | transexitcode: 65
[2025-10-08 18:12:18] 2025-10-09 01:11:45,528 | INFO     | exeerrorcode: 65
[2025-10-08 18:12:18] 2025-10-09 01:11:45,529 | INFO     | exeerrordiag: Non-zero return code from EVNTtoHITS (1)
[2025-10-08 18:12:18] 2025-10-09 01:11:45,529 | INFO     | exitcode: 65
[2025-10-08 18:12:18] 2025-10-09 01:11:45,529 | INFO     | exitmsg: Non-zero return code from EVNTtoHITS (1)
[2025-10-08 18:12:18] 2025-10-09 01:11:45,529 | INFO     | cpuconsumptiontime: 17 s
[2025-10-08 18:12:18] 2025-10-09 01:11:45,529 | INFO     | nevents: 0
[2025-10-08 18:12:18] 2025-10-09 01:11:45,529 | INFO     | neventsw: 0
[2025-10-08 18:12:18] 2025-10-09 01:11:45,529 | INFO     | pid: 1484603
[2025-10-08 18:12:18] 2025-10-09 01:11:45,529 | INFO     | pgrp: 1484603
[2025-10-08 18:12:18] 2025-10-09 01:11:45,529 | INFO     | corecount: 12
[2025-10-08 18:12:18] 2025-10-09 01:11:45,529 | INFO     | event service: False
[2025-10-08 18:12:18] 2025-10-09 01:11:45,529 | INFO     | sizes: {0: 2348681, 1: 2348880, 2: 2348880, 13: 2348908, 17: 2349226, 23: 2349254, 55: 2372587, 57: 2376879, 60: 2376907, 189: 2377073}
[2025-10-08 18:12:18] 2025-10-09 01:11:45,529 | INFO     | --------------------------------------------------
[2025-10-08 18:12:18] 2025-10-09 01:11:45,529 | INFO     | 
[2025-10-08 18:12:18] 2025-10-09 01:11:45,529 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2025-10-08 18:12:18] 2025-10-09 01:11:45,598 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-08 18:12:18] 2025-10-09 01:11:45,598 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-08 18:12:18] 2025-10-09 01:11:45,599 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-08 18:12:18] 2025-10-09 01:11:45,599 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-08 18:12:18] 2025-10-09 01:11:45,599 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-08 18:12:18] 2025-10-09 01:11:45,599 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-08 18:12:18] 2025-10-09 01:11:45,599 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-08 18:12:18] 2025-10-09 01:11:45,599 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-08 18:12:18] 2025-10-09 01:11:45,599 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-08 18:12:18] 2025-10-09 01:11:45,599 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-08 18:12:18] 2025-10-09 01:11:45,599 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-08 18:12:18] 2025-10-09 01:11:45,599 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-08 18:12:18] 2025-10-09 01:11:45,599 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-08 18:12:18] 2025-10-09 01:11:45,599 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-08 18:12:18] 2025-10-09 01:11:45,599 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-08 18:12:18] 2025-10-09 01:11:45,599 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-08 18:12:18] 2025-10-09 01:11:45,599 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-08 18:12:18] 2025-10-09 01:11:45,599 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-08 18:12:18] 2025-10-09 01:11:45,599 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-08 18:12:18] 2025-10-09 01:11:45,599 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-08 18:12:18] 2025-10-09 01:11:45,600 | INFO     | job 6836606511 has completed (purged errors)
[2025-10-08 18:12:18] 2025-10-09 01:11:45,600 | INFO     | overall cleanup function is called
[2025-10-08 18:12:18] 2025-10-09 01:11:45,877 | INFO     | PID=1474085 has CPU usage=1.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-08 18:12:18] 2025-10-09 01:11:45,877 | INFO     | .. there are 21 such processes running
[2025-10-08 18:12:18] 2025-10-09 01:11:46,611 | INFO     | --- collectZombieJob: --- 10, [1484603]
[2025-10-08 18:12:18] 2025-10-09 01:11:46,611 | INFO     | zombie collector waiting for pid 1484603
[2025-10-08 18:12:18] 2025-10-09 01:11:46,611 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-08 18:12:18] 2025-10-09 01:11:46,611 | INFO     | collected zombie processes
[2025-10-08 18:12:18] 2025-10-09 01:11:46,611 | INFO     | will attempt to kill all subprocesses of pid=1484603
[2025-10-08 18:12:18] 2025-10-09 01:11:46,819 | INFO     | process IDs to be killed: [1484603] (in reverse order)
[2025-10-08 18:12:18] 2025-10-09 01:11:46,882 | WARNING  | found no corresponding commands to process id(s)
[2025-10-08 18:12:18] 2025-10-09 01:11:46,882 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-08 18:12:18] 2025-10-09 01:11:46,889 | INFO     | did not find any defunct processes belonging to 1484603
[2025-10-08 18:12:18] 2025-10-09 01:11:46,896 | INFO     | did not find any defunct processes belonging to 1484603
[2025-10-08 18:12:18] 2025-10-09 01:11:46,897 | INFO     | ready for new job
[2025-10-08 18:12:18] 2025-10-09 01:11:46,897 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-08 18:12:18] 2025-10-09 01:11:46,898 | INFO     | ***************************************
[2025-10-08 18:12:18] 2025-10-09 01:11:46,898 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-08 18:12:18] 2025-10-09 01:11:46,898 | INFO     | ***************************************
[2025-10-08 18:12:18] 2025-10-09 01:11:46,898 | INFO     | 
[2025-10-08 18:12:18] 2025-10-09 01:11:46,900 | INFO     | architecture information:
[2025-10-08 18:12:18] 2025-10-09 01:11:46,900 | INFO     | executing command: cat /etc/os-release
[2025-10-08 18:12:18] 2025-10-09 01:11:46,912 | INFO     | cat /etc/os-release:
[2025-10-08 18:12:18] NAME="CentOS Linux"
[2025-10-08 18:12:18] VERSION="7 (Core)"
[2025-10-08 18:12:18] ID="centos"
[2025-10-08 18:12:18] ID_LIKE="rhel fedora"
[2025-10-08 18:12:18] VERSION_ID="7"
[2025-10-08 18:12:18] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-08 18:12:18] ANSI_COLOR="0;31"
[2025-10-08 18:12:18] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-08 18:12:18] HOME_URL="https://www.centos.org/"
[2025-10-08 18:12:18] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-08 18:12:18] 
[2025-10-08 18:12:18] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-08 18:12:18] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-08 18:12:18] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-08 18:12:18] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-08 18:12:18] 
[2025-10-08 18:12:18] 2025-10-09 01:11:46,913 | INFO     | ***************************************
[2025-10-08 18:12:18] 2025-10-09 01:11:47,420 | INFO     | executing command: df -mP /home/boinc/slots/0
[2025-10-08 18:12:18] 2025-10-09 01:11:47,500 | INFO     | sufficient remaining disk space (1820327936000 B)
[2025-10-08 18:12:18] 2025-10-09 01:11:47,501 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-08 18:12:18] 2025-10-09 01:11:47,501 | INFO     | current server update state: UPDATING_FINAL
[2025-10-08 18:12:18] 2025-10-09 01:11:47,501 | INFO     | update_server=False
[2025-10-08 18:12:18] 2025-10-09 01:11:47,501 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-08 18:12:18] 2025-10-09 01:11:47,501 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-08 18:12:18] 2025-10-09 01:11:47,502 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-08 18:12:18] 2025-10-09 01:11:47,847 | INFO     | all job control threads have been joined
[2025-10-08 18:12:18] 2025-10-09 01:11:48,270 | INFO     | all payload control threads have been joined
[2025-10-08 18:12:18] 2025-10-09 01:11:48,340 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-08 18:12:18] 2025-10-09 01:11:48,399 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-08 18:12:18] 2025-10-09 01:11:48,400 | INFO     | aborting loop
[2025-10-08 18:12:18] 2025-10-09 01:11:48,483 | INFO     | all data control threads have been joined
[2025-10-08 18:12:18] 2025-10-09 01:11:48,506 | INFO     | [job] retrieve thread has finished
[2025-10-08 18:12:18] 2025-10-09 01:11:48,508 | INFO     | [job] queue monitor thread has finished
[2025-10-08 18:12:18] 2025-10-09 01:11:48,853 | INFO     | [job] control thread has finished
[2025-10-08 18:12:18] 2025-10-09 01:11:48,871 | INFO     | [payload] validate_pre thread has finished
[2025-10-08 18:12:18] 2025-10-09 01:11:49,083 | INFO     | [payload] failed_post thread has finished
[2025-10-08 18:12:18] 2025-10-09 01:11:49,111 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-08 18:12:18] 2025-10-09 01:11:49,277 | INFO     | [payload] control thread has finished
[2025-10-08 18:12:18] 2025-10-09 01:11:49,341 | INFO     | [payload] execute_payloads thread has finished
[2025-10-08 18:12:18] 2025-10-09 01:11:49,360 | INFO     | [job] validate thread has finished
[2025-10-08 18:12:18] 2025-10-09 01:11:49,406 | INFO     | [job] job monitor thread has finished
[2025-10-08 18:12:18] 2025-10-09 01:11:49,489 | INFO     | [data] control thread has finished
[2025-10-08 18:12:18] 2025-10-09 01:11:49,507 | INFO     | [data] copytool_out thread has finished
[2025-10-08 18:12:18] 2025-10-09 01:11:49,626 | INFO     | [job] create_data_payload thread has finished
[2025-10-08 18:12:18] 2025-10-09 01:11:49,640 | INFO     | [payload] validate_post thread has finished
[2025-10-08 18:12:18] 2025-10-09 01:11:49,992 | INFO     | [data] copytool_in thread has finished
[2025-10-08 18:12:18] 2025-10-09 01:11:52,356 | INFO     | [data] queue_monitor thread has finished
[2025-10-08 18:12:18] 2025-10-09 01:11:58,743 | INFO     | [monitor] cgroup control has ended
[2025-10-08 18:12:18] 2025-10-09 01:12:00,546 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140594696361792)>', '<ExcThread(monitor, started 140594294789888)>']
[2025-10-08 18:12:18] 2025-10-09 01:12:05,572 | INFO     | all workflow threads have been joined
[2025-10-08 18:12:18] 2025-10-09 01:12:05,573 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-08 18:12:18] 2025-10-09 01:12:05,573 | INFO     | traces error code: 0
[2025-10-08 18:12:18] 2025-10-09 01:12:05,573 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-08 18:12:18] 2025-10-09 01:12:18,351 | INFO     | PID=1474085 has CPU usage=1.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-08 18:12:18] 2025-10-09 01:12:18,351 | INFO     | .. there are 21 such processes running
[2025-10-08 18:12:18] 2025-10-09 01:12:18,352 | INFO     | found 0 job(s) in 20 queues
[2025-10-08 18:12:18] 2025-10-09 01:12:18,352 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-08 18:12:18] 2025-10-09 01:12:18,352 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-08 18:12:18] 2025-10-09 01:12:18,352 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-08 18:12:18] 2025-10-09 01:12:18,352 | CRITICAL | thread 'MainThread' is not alive
[2025-10-08 18:12:18] 2025-10-09 01:12:18,352 | INFO     | [monitor] control thread has ended
[2025-10-08 18:12:18] 2025-10-09 01:12:18,483 [wrapper] ==== pilot stdout END ====
[2025-10-08 18:12:18] 2025-10-09 01:12:18,506 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-08 18:12:18] 2025-10-09 01:12:18,508 [wrapper] pilotpid: 1474085
[2025-10-08 18:12:18] 2025-10-09 01:12:18,511 [wrapper] Pilot exit status: 0
[2025-10-08 18:12:18] 2025-10-09 01:12:18,520 [wrapper] pandaids: 6836606511
[2025-10-08 18:12:18] 2025-10-09 01:12:18,560 [wrapper] cleanup supervisor_pilot 1474094 1474086
[2025-10-08 18:12:18] 2025-10-09 01:12:18,562 [wrapper] Test setup, not cleaning
[2025-10-08 18:12:18] 2025-10-09 01:12:18,564 [wrapper] apfmon messages muted
[2025-10-08 18:12:18] 2025-10-09 01:12:18,566 [wrapper] ==== wrapper stdout END ====
[2025-10-08 18:12:18] 2025-10-09 01:12:18,568 [wrapper] ==== wrapper stderr END ====
[2025-10-08 18:12:18]  *** Error codes and diagnostics ***
[2025-10-08 18:12:18]     "exeErrorCode": 65,
[2025-10-08 18:12:18]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (1)",
[2025-10-08 18:12:18]     "pilotErrorCode": 1305,
[2025-10-08 18:12:18]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (1)",
[2025-10-08 18:12:18]  *** Listing of results directory ***
[2025-10-08 18:12:18] total 221276
[2025-10-08 18:12:18] -rw-r--r--. 1 boinc boinc    557409 Oct  8 16:22 pilot3.tar.gz
[2025-10-08 18:12:18] -rwx------. 1 boinc boinc     36292 Oct  8 16:37 runpilot2-wrapper.sh
[2025-10-08 18:12:18] -rw-r--r--. 1 boinc boinc      5112 Oct  8 16:37 queuedata.json
[2025-10-08 18:12:18] -rw-r--r--. 1 boinc boinc       100 Oct  8 18:07 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-08 18:12:18] -rwxr-xr-x. 1 boinc boinc      7986 Oct  8 18:07 run_atlas
[2025-10-08 18:12:18] -rw-r--r--. 1 boinc boinc       105 Oct  8 18:07 job.xml
[2025-10-08 18:12:18] -rw-r--r--. 1 boinc boinc      6593 Oct  8 18:07 init_data.xml
[2025-10-08 18:12:18] -rw-r--r--. 2 boinc boinc 222461601 Oct  8 18:07 EVNT.46676267._000461.pool.root.1
[2025-10-08 18:12:18] -rw-r--r--. 2 boinc boinc     15120 Oct  8 18:07 start_atlas.sh
[2025-10-08 18:12:18] drwxrwx--x. 2 boinc boinc      4096 Oct  8 18:07 shared
[2025-10-08 18:12:18] -rw-r--r--. 2 boinc boinc    569669 Oct  8 18:07 input.tar.gz
[2025-10-08 18:12:18] -rw-r--r--. 1 boinc boinc         0 Oct  8 18:07 boinc_lockfile
[2025-10-08 18:12:18] -rw-r--r--. 1 boinc boinc      2549 Oct  8 18:07 pandaJob.out
[2025-10-08 18:12:18] -rw-------. 1 boinc boinc    979298 Oct  8 18:07 agis_schedconf.cvmfs.json
[2025-10-08 18:12:18] -rw-------. 1 boinc boinc   1560401 Oct  8 18:07 agis_ddmendpoints.agis.ALL.json
[2025-10-08 18:12:18] drwx------. 5 boinc boinc      4096 Oct  8 18:07 pilot3
[2025-10-08 18:12:18] -rw-r--r--. 1 boinc boinc       524 Oct  8 18:09 boinc_task_state.xml
[2025-10-08 18:12:18] -rw-------. 1 boinc boinc       961 Oct  8 18:09 memory_monitor_summary.json
[2025-10-08 18:12:18] -rw-------. 1 boinc boinc     21944 Oct  8 18:09 log.46676269._011306.job.log.tgz.1
[2025-10-08 18:12:18] -rw-------. 1 boinc boinc      8396 Oct  8 18:11 heartbeat.json
[2025-10-08 18:12:18] -rw-r--r--. 1 boinc boinc        22 Oct  8 18:12 wrapper_checkpoint.txt
[2025-10-08 18:12:18] -rw-------. 1 boinc boinc        95 Oct  8 18:12 pilot_heartbeat.json
[2025-10-08 18:12:18] -rw-------. 1 boinc boinc       893 Oct  8 18:12 pilotlog.txt
[2025-10-08 18:12:18] -rw-------. 1 boinc boinc     90076 Oct  8 18:12 log.46676269._011306.job.log.1
[2025-10-08 18:12:18] -rw-------. 1 boinc boinc       188 Oct  8 18:12 output.list
[2025-10-08 18:12:18] -rw-r--r--. 1 boinc boinc       620 Oct  8 18:12 runtime_log
[2025-10-08 18:12:18] -rw-------. 1 boinc boinc    133120 Oct  8 18:12 result.tar.gz
[2025-10-08 18:12:18] -rw-r--r--. 1 boinc boinc      8528 Oct  8 18:12 runtime_log.err
[2025-10-08 18:12:18] -rw-------. 1 boinc boinc       644 Oct  8 18:12 K8cNDmNusQ8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmUtYNDm0Z5vUm.diag
[2025-10-08 18:12:18] -rw-r--r--. 1 boinc boinc      8192 Oct  8 18:12 boinc_mmap_file
[2025-10-08 18:12:18] -rw-r--r--. 1 boinc boinc     21926 Oct  8 18:12 stderr.txt
[2025-10-08 18:12:18] No HITS result produced
[2025-10-08 18:12:18]  *** Contents of shared directory: ***
[2025-10-08 18:12:18] total 217960
[2025-10-08 18:12:18] -rw-r--r--. 2 boinc boinc 222461601 Oct  8 18:07 ATLAS.root_0
[2025-10-08 18:12:18] -rw-r--r--. 2 boinc boinc     15120 Oct  8 18:07 start_atlas.sh
[2025-10-08 18:12:18] -rw-r--r--. 2 boinc boinc    569669 Oct  8 18:07 input.tar.gz
[2025-10-08 18:12:18] -rw-------. 1 boinc boinc    133120 Oct  8 18:12 result.tar.gz
18:12:20 (1462066): run_atlas exited; CPU time 25.764886
18:12:20 (1462066): called boinc_finish(0)

</stderr_txt>
]]>

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