Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
20:46:54 (3846959): wrapper (7.7.26015): starting
20:46:54 (3846959): wrapper: running run_atlas (--nthreads 8)
[2025-10-08 20:46:54] Arguments: --nthreads 8
[2025-10-08 20:46:54] Threads: 8
[2025-10-08 20:46:54] Checking for CVMFS
[2025-10-08 20:46:54] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-08 20:46:54] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-08 20:46:54] Running cvmfs_config stat atlas.cern.ch
[2025-10-08 20:46:54] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-08 20:46:54] 2.13.2.0 5248 39259 411268 151490 0 266 25971664 32935937 9104 16776704 0 64937076 99.636 59216098 30877 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-10-08 20:46:54] CVMFS is ok
[2025-10-08 20:46:54] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-08 20:46:54] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-08 20:46:54] Further information can be found at the LHC@home message board.
[2025-10-08 20:46:54] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-08 20:46:54] Checking for apptainer binary...
[2025-10-08 20:46:54] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-08 20:46:54] Running /usr/bin/apptainer --version
[2025-10-08 20:46:54] apptainer version 1.4.3-1.el9
[2025-10-08 20:46:54] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-08 20:46:54] c6-1-24-1.aglt2.org
[2025-10-08 20:46:54] apptainer works
[2025-10-08 20:46:54] Set ATHENA_PROC_NUMBER=8
[2025-10-08 20:46:54] Set ATHENA_CORE_NUMBER=8
[2025-10-08 20:46:54] Starting ATLAS job with PandaID=6836603415
[2025-10-08 20:46:54] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
21:20:08 (3846959): BOINC client no longer exists - exiting
21:20:08 (3846959): timer handler: client dead, exiting
21:28:45 (6286): wrapper (7.7.26015): starting
21:28:45 (6286): wrapper: running run_atlas (--nthreads 8)
[2025-10-08 21:28:45] Arguments: --nthreads 8
[2025-10-08 21:28:45] Threads: 8
[2025-10-08 21:28:45] This job has been restarted, cleaning up previous attempt
[2025-10-08 21:28:45] Checking for CVMFS
[2025-10-08 21:28:45] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-08 21:28:45] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-08 21:28:45] Running cvmfs_config stat atlas.cern.ch
[2025-10-08 21:28:46] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-08 21:28:46] 2.13.2.0 5248 39301 423760 151491 3 591 26396513 32935937 13162 16776704 0 65467825 99.637 59342328 30880 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-10-08 21:28:46] CVMFS is ok
[2025-10-08 21:28:46] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-08 21:28:46] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-08 21:28:46] Further information can be found at the LHC@home message board.
[2025-10-08 21:28:46] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-08 21:28:46] Checking for apptainer binary...
[2025-10-08 21:28:46] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-08 21:28:46] Running /usr/bin/apptainer --version
[2025-10-08 21:28:46] apptainer version 1.4.3-1.el9
[2025-10-08 21:28:46] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-08 21:28:46] c6-1-24-1.aglt2.org
[2025-10-08 21:28:46] apptainer works
[2025-10-08 21:28:46] Set ATHENA_PROC_NUMBER=8
[2025-10-08 21:28:46] Set ATHENA_CORE_NUMBER=8
[2025-10-08 21:28:46] Starting ATLAS job with PandaID=6836603415
[2025-10-08 21:28:46] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-09 05:58:12]  *** The last 200 lines of the pilot log: ***
[2025-10-09 05:58:12] 2025-10-09 07:44:11,705 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-09 05:58:12] 2025-10-09 07:44:11,705 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-09 05:58:12] 2025-10-09 07:44:11,706 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-09 05:58:12] 2025-10-09 07:44:11,715 | INFO     | fitting pss+swap vs Time
[2025-10-09 05:58:12] 2025-10-09 07:44:11,716 | INFO     | sum of square deviations: 15451808576.27999
[2025-10-09 05:58:12] 2025-10-09 07:44:11,723 | INFO     | sum of deviations: 171776110079.45093
[2025-10-09 05:58:12] 2025-10-09 07:44:11,723 | INFO     | mean x: 1759984588.3994565
[2025-10-09 05:58:12] 2025-10-09 07:44:11,724 | INFO     | mean y: 2083887.2554347827
[2025-10-09 05:58:12] 2025-10-09 07:44:11,724 | INFO     | -- intersect: -19563477315.666626
[2025-10-09 05:58:12] 2025-10-09 07:44:11,724 | INFO     | intersect: -19563477315.666626
[2025-10-09 05:58:12] 2025-10-09 07:44:11,724 | INFO     | chi2: 2.0736805451198568
[2025-10-09 05:58:12] 2025-10-09 07:44:11,725 | INFO     | sum of square deviations: 14830517412.000032
[2025-10-09 05:58:12] 2025-10-09 07:44:11,733 | INFO     | sum of deviations: 170024737783.54532
[2025-10-09 05:58:12] 2025-10-09 07:44:11,733 | INFO     | mean x: 1759984435.909091
[2025-10-09 05:58:12] 2025-10-09 07:44:11,733 | INFO     | mean y: 2083457.0771349862
[2025-10-09 05:58:12] 2025-10-09 07:44:11,733 | INFO     | -- intersect: -20175290258.585342
[2025-10-09 05:58:12] 2025-10-09 07:44:11,733 | INFO     | intersect: -20175290258.585342
[2025-10-09 05:58:12] 2025-10-09 07:44:11,734 | INFO     | chi2: 2.0668581624405187
[2025-10-09 05:58:12] 2025-10-09 07:44:11,734 | INFO     | current chi2=2.0668581624405187 (change=0.3289987310433958 %)
[2025-10-09 05:58:12] 2025-10-09 07:44:11,734 | INFO     | right removable region: 362
[2025-10-09 05:58:12] 2025-10-09 07:44:11,735 | INFO     | sum of square deviations: 14830337827.17911
[2025-10-09 05:58:12] 2025-10-09 07:44:11,742 | INFO     | sum of deviations: 107078314992.54541
[2025-10-09 05:58:12] 2025-10-09 07:44:11,742 | INFO     | mean x: 1759984740.9118457
[2025-10-09 05:58:12] 2025-10-09 07:44:11,742 | INFO     | mean y: 2099713.4545454546
[2025-10-09 05:58:12] 2025-10-09 07:44:11,742 | INFO     | -- intersect: -12705378879.787888
[2025-10-09 05:58:12] 2025-10-09 07:44:11,742 | INFO     | intersect: -12705378879.787888
[2025-10-09 05:58:12] 2025-10-09 07:44:11,743 | INFO     | chi2: 0.26743511358253613
[2025-10-09 05:58:12] 2025-10-09 07:44:11,743 | INFO     | current chi2=0.26743511358253613 (change=87.10336005167669 %)
[2025-10-09 05:58:12] 2025-10-09 07:44:11,744 | INFO     | sum of square deviations: 14225860850.639584
[2025-10-09 05:58:12] 2025-10-09 07:44:11,751 | INFO     | sum of deviations: 92023661503.7262
[2025-10-09 05:58:12] 2025-10-09 07:44:11,751 | INFO     | mean x: 1759984893.4106145
[2025-10-09 05:58:12] 2025-10-09 07:44:11,752 | INFO     | mean y: 2103497.3351955307
[2025-10-09 05:58:12] 2025-10-09 07:44:11,752 | INFO     | -- intersect: -11382814138.465271
[2025-10-09 05:58:12] 2025-10-09 07:44:11,752 | INFO     | intersect: -11382814138.465271
[2025-10-09 05:58:12] 2025-10-09 07:44:11,752 | INFO     | chi2: 0.1979853337153831
[2025-10-09 05:58:12] 2025-10-09 07:44:11,752 | INFO     | current chi2=0.1979853337153831 (change=25.968833687098968 %)
[2025-10-09 05:58:12] 2025-10-09 07:44:11,757 | INFO     | sum of square deviations: 13638036087.099129
[2025-10-09 05:58:12] 2025-10-09 07:44:11,765 | INFO     | sum of deviations: 86319820122.32016
[2025-10-09 05:58:12] 2025-10-09 07:44:11,765 | INFO     | mean x: 1759985045.9093485
[2025-10-09 05:58:12] 2025-10-09 07:44:11,765 | INFO     | mean y: 2104974.478753541
[2025-10-09 05:58:12] 2025-10-09 07:44:11,765 | INFO     | -- intersect: -11137445589.15249
[2025-10-09 05:58:12] 2025-10-09 07:44:11,765 | INFO     | intersect: -11137445589.15249
[2025-10-09 05:58:12] 2025-10-09 07:44:11,766 | INFO     | chi2: 0.19353247604123233
[2025-10-09 05:58:12] 2025-10-09 07:44:11,766 | INFO     | current chi2=0.19353247604123233 (change=2.2490846117682852 %)
[2025-10-09 05:58:12] 2025-10-09 07:44:11,766 | INFO     | left removable region: 30
[2025-10-09 05:58:12] 2025-10-09 07:44:11,767 | INFO     | sum of square deviations: 11345879948.466871
[2025-10-09 05:58:12] 2025-10-09 07:44:11,770 | INFO     | sum of deviations: 79739322247.24998
[2025-10-09 05:58:12] 2025-10-09 07:44:11,771 | INFO     | mean x: 1759985320.4126506
[2025-10-09 05:58:12] 2025-10-09 07:44:11,771 | INFO     | mean y: 2106282.75
[2025-10-09 05:58:12] 2025-10-09 07:44:11,771 | INFO     | -- intersect: -12367144692.250622
[2025-10-09 05:58:12] 2025-10-09 07:44:11,771 | INFO     | intersect: -12367144692.250622
[2025-10-09 05:58:12] 2025-10-09 07:44:11,772 | INFO     | chi2: 0.16611997920779334
[2025-10-09 05:58:12] 2025-10-09 07:44:11,772 | INFO     | -- intersect: -12367144692.250622
[2025-10-09 05:58:12] 2025-10-09 07:44:11,772 | INFO     | current memory leak: 7.03 B/s (using 332 data points, chi2=0.17)
[2025-10-09 05:58:12] 2025-10-09 07:44:11,773 | INFO     | could have reported an average CPU frequency of 2705 MHz (16 samples)
[2025-10-09 05:58:12] 2025-10-09 07:44:11,773 | INFO     | ..............................
[2025-10-09 05:58:12] 2025-10-09 07:44:11,773 | INFO     | . Timing measurements:
[2025-10-09 05:58:12] 2025-10-09 07:44:11,773 | INFO     | . get job = 0 s
[2025-10-09 05:58:12] 2025-10-09 07:44:11,773 | INFO     | . initial setup = 1 s
[2025-10-09 05:58:12] 2025-10-09 07:44:11,773 | INFO     | . payload setup = 10 s
[2025-10-09 05:58:12] 2025-10-09 07:44:11,773 | INFO     | . stage-in = 0 s
[2025-10-09 05:58:12] 2025-10-09 07:44:11,774 | INFO     | . payload execution = 22450 s
[2025-10-09 05:58:12] 2025-10-09 07:44:11,774 | INFO     | . stage-out = 6 s
[2025-10-09 05:58:12] 2025-10-09 07:44:11,774 | INFO     | . log creation = 0 s
[2025-10-09 05:58:12] 2025-10-09 07:44:11,774 | INFO     | ..............................
[2025-10-09 05:58:12] 2025-10-09 07:44:11,955 | INFO     | 
[2025-10-09 05:58:12] 2025-10-09 07:44:11,955 | INFO     | job summary report
[2025-10-09 05:58:12] 2025-10-09 07:44:11,956 | INFO     | --------------------------------------------------
[2025-10-09 05:58:12] 2025-10-09 07:44:11,956 | INFO     | PanDA job id: 6836603415
[2025-10-09 05:58:12] 2025-10-09 07:44:11,956 | INFO     | task id: 46676269
[2025-10-09 05:58:12] 2025-10-09 07:44:11,956 | INFO     | errors: (none)
[2025-10-09 05:58:12] 2025-10-09 07:44:11,956 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-09 05:58:12] 2025-10-09 07:44:11,956 | INFO     | pilot state: finished 
[2025-10-09 05:58:12] 2025-10-09 07:44:11,956 | INFO     | transexitcode: 0
[2025-10-09 05:58:12] 2025-10-09 07:44:11,956 | INFO     | exeerrorcode: 0
[2025-10-09 05:58:12] 2025-10-09 07:44:11,956 | INFO     | exeerrordiag: 
[2025-10-09 05:58:12] 2025-10-09 07:44:11,956 | INFO     | exitcode: 0
[2025-10-09 05:58:12] 2025-10-09 07:44:11,956 | INFO     | exitmsg: OK
[2025-10-09 05:58:12] 2025-10-09 07:44:11,957 | INFO     | cpuconsumptiontime: 43299 s
[2025-10-09 05:58:12] 2025-10-09 07:44:11,957 | INFO     | nevents: 400
[2025-10-09 05:58:12] 2025-10-09 07:44:11,957 | INFO     | neventsw: 0
[2025-10-09 05:58:12] 2025-10-09 07:44:11,957 | INFO     | pid: 83923
[2025-10-09 05:58:12] 2025-10-09 07:44:11,957 | INFO     | pgrp: 83923
[2025-10-09 05:58:12] 2025-10-09 07:44:11,957 | INFO     | corecount: 8
[2025-10-09 05:58:12] 2025-10-09 07:44:11,957 | INFO     | event service: False
[2025-10-09 05:58:12] 2025-10-09 07:44:11,957 | INFO     | sizes: {0: 2348024, 1: 2348709, 2: 2348908, 9: 2349170, 13: 2349198, 22467: 2383029, 22468: 2383156, 22476: 2392266, 22486: 2392404}
[2025-10-09 05:58:12] 2025-10-09 07:44:11,957 | INFO     | --------------------------------------------------
[2025-10-09 05:58:12] 2025-10-09 07:44:11,957 | INFO     | 
[2025-10-09 05:58:12] 2025-10-09 07:44:11,958 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-10-09 05:58:12] 2025-10-09 07:44:11,984 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-09 05:58:12] 2025-10-09 07:44:11,984 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-09 05:58:12] 2025-10-09 07:44:11,984 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-09 05:58:12] 2025-10-09 07:44:11,984 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-09 05:58:12] 2025-10-09 07:44:11,984 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-09 05:58:12] 2025-10-09 07:44:11,984 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-09 05:58:12] 2025-10-09 07:44:11,984 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-09 05:58:12] 2025-10-09 07:44:11,984 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-09 05:58:12] 2025-10-09 07:44:11,984 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-09 05:58:12] 2025-10-09 07:44:11,984 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-09 05:58:12] 2025-10-09 07:44:11,985 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-09 05:58:12] 2025-10-09 07:44:11,985 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-09 05:58:12] 2025-10-09 07:44:11,985 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-09 05:58:12] 2025-10-09 07:44:11,985 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-09 05:58:12] 2025-10-09 07:44:11,985 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-09 05:58:12] 2025-10-09 07:44:11,985 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-09 05:58:12] 2025-10-09 07:44:11,985 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-09 05:58:12] 2025-10-09 07:44:11,985 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-09 05:58:12] 2025-10-09 07:44:11,985 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-09 05:58:12] 2025-10-09 07:44:11,985 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-09 05:58:12] 2025-10-09 07:44:11,985 | INFO     | job 6836603415 has completed (purged errors)
[2025-10-09 05:58:12] 2025-10-09 07:44:11,986 | INFO     | overall cleanup function is called
[2025-10-09 05:58:12] 2025-10-09 07:44:13,030 | INFO     | --- collectZombieJob: --- 10, [83923]
[2025-10-09 05:58:12] 2025-10-09 07:44:13,030 | INFO     | zombie collector waiting for pid 83923
[2025-10-09 05:58:12] 2025-10-09 07:44:13,030 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-09 05:58:12] 2025-10-09 07:44:13,030 | INFO     | collected zombie processes
[2025-10-09 05:58:12] 2025-10-09 07:44:13,030 | INFO     | will attempt to kill all subprocesses of pid=83923
[2025-10-09 05:58:12] 2025-10-09 07:44:15,720 | INFO     | process IDs to be killed: [83923] (in reverse order)
[2025-10-09 05:58:12] 2025-10-09 07:44:15,860 | WARNING  | found no corresponding commands to process id(s)
[2025-10-09 05:58:12] 2025-10-09 07:44:15,860 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-09 05:58:12] 2025-10-09 07:44:15,874 | INFO     | did not find any defunct processes belonging to 83923
[2025-10-09 05:58:12] 2025-10-09 07:44:15,892 | INFO     | did not find any defunct processes belonging to 83923
[2025-10-09 05:58:12] 2025-10-09 07:44:15,893 | INFO     | ready for new job
[2025-10-09 05:58:12] 2025-10-09 07:44:15,893 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-09 05:58:12] 2025-10-09 07:44:15,897 | INFO     | ***************************************
[2025-10-09 05:58:12] 2025-10-09 07:44:15,897 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-09 05:58:12] 2025-10-09 07:44:15,897 | INFO     | ***************************************
[2025-10-09 05:58:12] 2025-10-09 07:44:15,897 | INFO     | 
[2025-10-09 05:58:12] 2025-10-09 07:44:15,914 | INFO     | architecture information:
[2025-10-09 05:58:12] 2025-10-09 07:44:15,942 | INFO     | executing command: cat /etc/os-release
[2025-10-09 05:58:12] 2025-10-09 07:44:15,984 | INFO     | cat /etc/os-release:
[2025-10-09 05:58:12] NAME="CentOS Linux"
[2025-10-09 05:58:12] VERSION="7 (Core)"
[2025-10-09 05:58:12] ID="centos"
[2025-10-09 05:58:12] ID_LIKE="rhel fedora"
[2025-10-09 05:58:12] VERSION_ID="7"
[2025-10-09 05:58:12] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-09 05:58:12] ANSI_COLOR="0;31"
[2025-10-09 05:58:12] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-09 05:58:12] HOME_URL="https://www.centos.org/"
[2025-10-09 05:58:12] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-09 05:58:12] 
[2025-10-09 05:58:12] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-09 05:58:12] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-09 05:58:12] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-09 05:58:12] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-09 05:58:12] 
[2025-10-09 05:58:12] 2025-10-09 07:44:15,984 | INFO     | ***************************************
[2025-10-09 05:58:12] 2025-10-09 07:44:16,491 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-10-09 05:58:12] 2025-10-09 07:44:16,513 | INFO     | sufficient remaining disk space (72913780736 B)
[2025-10-09 05:58:12] 2025-10-09 07:44:16,514 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-09 05:58:12] 2025-10-09 07:44:16,514 | INFO     | current server update state: UPDATING_FINAL
[2025-10-09 05:58:12] 2025-10-09 07:44:16,514 | INFO     | update_server=False
[2025-10-09 05:58:12] 2025-10-09 07:44:16,514 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-09 05:58:12] 2025-10-09 07:44:16,755 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-09 05:58:12] 2025-10-09 07:44:16,755 | INFO     | aborting loop
[2025-10-09 05:58:12] 2025-10-09 07:44:16,872 | INFO     | all payload control threads have been joined
[2025-10-09 05:58:12] 2025-10-09 07:44:16,904 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-09 05:58:12] 2025-10-09 07:44:16,960 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-09 05:58:12] 2025-10-09 07:44:16,983 | INFO     | all job control threads have been joined
[2025-10-09 05:58:12] 2025-10-09 07:44:16,983 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-09 05:58:12] 2025-10-09 07:44:17,378 | INFO     | all data control threads have been joined
[2025-10-09 05:58:12] 2025-10-09 07:44:17,544 | INFO     | [job] retrieve thread has finished
[2025-10-09 05:58:12] 2025-10-09 07:44:17,785 | INFO     | [job] job monitor thread has finished
[2025-10-09 05:58:12] 2025-10-09 07:44:17,840 | INFO     | [payload] execute_payloads thread has finished
[2025-10-09 05:58:12] 2025-10-09 07:44:17,895 | INFO     | [payload] control thread has finished
[2025-10-09 05:58:12] 2025-10-09 07:44:17,988 | INFO     | [job] queue monitor thread has finished
[2025-10-09 05:58:12] 2025-10-09 07:44:17,993 | INFO     | [job] control thread has finished
[2025-10-09 05:58:12] 2025-10-09 07:44:18,422 | INFO     | [data] control thread has finished
[2025-10-09 05:58:12] 2025-10-09 07:44:18,432 | INFO     | [payload] validate_post thread has finished
[2025-10-09 05:58:12] 2025-10-09 07:44:18,437 | INFO     | [payload] failed_post thread has finished
[2025-10-09 05:58:12] 2025-10-09 07:44:18,514 | INFO     | [payload] validate_pre thread has finished
[2025-10-09 05:58:12] 2025-10-09 07:44:18,745 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-09 05:58:12] 2025-10-09 07:44:18,791 | INFO     | [job] create_data_payload thread has finished
[2025-10-09 05:58:12] 2025-10-09 07:44:18,792 | INFO     | [data] copytool_in thread has finished
[2025-10-09 05:58:12] 2025-10-09 07:44:18,793 | INFO     | [job] validate thread has finished
[2025-10-09 05:58:12] 2025-10-09 07:44:18,966 | INFO     | [data] copytool_out thread has finished
[2025-10-09 05:58:12] 2025-10-09 07:44:21,034 | INFO     | [data] queue_monitor thread has finished
[2025-10-09 05:58:12] 2025-10-09 07:44:46,983 | INFO     | PID=33129 has CPU usage=2.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-09 05:58:12] 2025-10-09 07:44:46,984 | INFO     | .. there are 20 such processes running
[2025-10-09 05:58:12] 2025-10-09 07:44:46,984 | INFO     | found 0 job(s) in 20 queues
[2025-10-09 05:58:12] 2025-10-09 07:44:46,984 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-09 05:58:12] 2025-10-09 07:44:46,984 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-09 05:58:12] 2025-10-09 07:44:50,243 | INFO     | [monitor] cgroup control has ended
[2025-10-09 05:58:12] 2025-10-09 07:44:51,388 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140231473235776)>', '<ExcThread(monitor, started 140230992578304)>']
[2025-10-09 05:58:12] 2025-10-09 07:44:52,086 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-09 05:58:12] 2025-10-09 07:44:52,086 | INFO     | [monitor] control thread has ended
[2025-10-09 05:58:12] 2025-10-09 07:44:56,414 | INFO     | all workflow threads have been joined
[2025-10-09 05:58:12] 2025-10-09 07:44:56,414 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-09 05:58:12] 2025-10-09 07:44:56,414 | INFO     | traces error code: 0
[2025-10-09 05:58:12] 2025-10-09 07:44:56,415 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-09 05:58:12] 2025-10-09 07:44:59,859 [wrapper] ==== pilot stdout END ====
[2025-10-09 05:58:12] 2025-10-09 07:44:59,881 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-09 05:58:12] 2025-10-09 07:44:59,902 [wrapper] pilotpid: 33129
[2025-10-09 05:58:12] 2025-10-09 07:44:59,924 [wrapper] Pilot exit status: 0
[2025-10-09 05:58:12] 2025-10-09 07:45:00,040 [wrapper] pandaids: 6836603415 6836603415
[2025-10-09 05:58:12] 2025-10-09 07:45:00,315 [wrapper] cleanup supervisor_pilot 1199226 33130
[2025-10-09 05:58:12] 2025-10-09 07:45:00,366 [wrapper] Test setup, not cleaning
[2025-10-09 05:58:12] 2025-10-09 07:45:00,386 [wrapper] apfmon messages muted
[2025-10-09 05:58:12] 2025-10-09 07:45:00,410 [wrapper] ==== wrapper stdout END ====
[2025-10-09 05:58:12] 2025-10-09 07:45:00,430 [wrapper] ==== wrapper stderr END ====
[2025-10-09 05:58:12]  *** Error codes and diagnostics ***
[2025-10-09 05:58:12]     "exeErrorCode": 0,
[2025-10-09 05:58:12]     "exeErrorDiag": "",
[2025-10-09 05:58:12]     "pilotErrorCode": 0,
[2025-10-09 05:58:12]     "pilotErrorDiag": "",
[2025-10-09 05:58:12]  *** Listing of results directory ***
[2025-10-09 05:58:12] total 628428
[2025-10-09 05:58:12] drwx------. 5 boincer umatlas      4096 Oct  7 03:00 pilot3
[2025-10-09 05:58:12] -rw-r--r--. 1 boincer umatlas    557409 Oct  8 18:57 pilot3.tar.gz
[2025-10-09 05:58:12] -rwx------. 1 boincer umatlas     36292 Oct  8 19:03 runpilot2-wrapper.sh
[2025-10-09 05:58:12] -rw-r--r--. 1 boincer umatlas      5112 Oct  8 19:05 queuedata.json
[2025-10-09 05:58:12] -rw-r--r--. 1 boincer umatlas       100 Oct  8 20:46 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-09 05:58:12] -rwxr-xr-x. 1 boincer umatlas      7986 Oct  8 20:46 run_atlas
[2025-10-09 05:58:12] -rw-r--r--. 1 boincer umatlas       105 Oct  8 20:46 job.xml
[2025-10-09 05:58:12] -rw-r--r--. 3 boincer umatlas 218911484 Oct  8 20:46 EVNT.46676267._000390.pool.root.1
[2025-10-09 05:58:12] -rw-r--r--. 3 boincer umatlas 218911484 Oct  8 20:46 ATLAS.root_0
[2025-10-09 05:58:12] -rw-r--r--. 2 boincer umatlas     15120 Oct  8 20:46 start_atlas.sh
[2025-10-09 05:58:12] drwxrwx--x. 2 boincer umatlas      4096 Oct  8 20:46 shared
[2025-10-09 05:58:12] -rw-r--r--. 2 boincer umatlas    569682 Oct  8 20:46 input.tar.gz
[2025-10-09 05:58:12] -rw-r--r--. 1 boincer umatlas         0 Oct  8 20:46 boinc_lockfile
[2025-10-09 05:58:12] -rw-r--r--. 1 boincer umatlas      2548 Oct  8 21:28 pandaJob.out
[2025-10-09 05:58:12] -rw-------. 1 boincer umatlas    979290 Oct  8 21:29 agis_schedconf.cvmfs.json
[2025-10-09 05:58:12] -rw-------. 1 boincer umatlas 195406072 Oct  9 03:43 HITS.46676269._009653.pool.root.1
[2025-10-09 05:58:12] -rw-r--r--. 1 boincer umatlas       531 Oct  9 03:43 boinc_task_state.xml
[2025-10-09 05:58:12] -rw-------. 1 boincer umatlas      1040 Oct  9 03:43 memory_monitor_summary.json
[2025-10-09 05:58:12] -rw-------. 1 boincer umatlas   1560401 Oct  9 03:43 agis_ddmendpoints.agis.ALL.json
[2025-10-09 05:58:12] -rw-------. 1 boincer umatlas    550905 Oct  9 03:43 log.46676269._009653.job.log.tgz.1
[2025-10-09 05:58:12] -rw-------. 1 boincer umatlas        96 Oct  9 03:44 pilot_heartbeat.json
[2025-10-09 05:58:12] -rw-------. 1 boincer umatlas      7820 Oct  9 03:44 heartbeat.json
[2025-10-09 05:58:12] -rw-------. 1 boincer umatlas      4822 Oct  9 03:44 pilotlog.txt
[2025-10-09 05:58:12] -rw-------. 1 boincer umatlas   2636192 Oct  9 03:45 log.46676269._009653.job.log.1
[2025-10-09 05:58:12] -rw-------. 1 boincer umatlas       357 Oct  9 03:45 output.list
[2025-10-09 05:58:12] -rw-r--r--. 1 boincer umatlas       620 Oct  9 03:45 runtime_log
[2025-10-09 05:58:12] -rw-------. 1 boincer umatlas   3205120 Oct  9 03:45 result.tar.gz
[2025-10-09 05:58:12] -rw-r--r--. 1 boincer umatlas      8794 Oct  9 03:45 runtime_log.err
[2025-10-09 05:58:12] -rw-------. 1 boincer umatlas       781 Oct  9 03:45 jz5KDmXNsQ8n9Rq4apOajLDm4fhM0noT9bVof3QYDmu4MMDm9uu4fm.diag
[2025-10-09 05:58:12] -rw-r--r--. 1 boincer umatlas      6840 Oct  9 05:57 init_data.xml
[2025-10-09 05:58:12] -rw-r--r--. 1 boincer umatlas      8192 Oct  9 05:57 boinc_mmap_file
[2025-10-09 05:58:12] -rw-r--r--. 1 boincer umatlas        28 Oct  9 05:57 wrapper_checkpoint.txt
[2025-10-09 05:58:12] -rw-r--r--. 1 boincer umatlas     23262 Oct  9 05:58 stderr.txt
[2025-10-09 05:58:12] HITS file was successfully produced:
[2025-10-09 05:58:12] -rw-------. 1 boincer umatlas 195406072 Oct  9 03:43 shared/HITS.pool.root.1
[2025-10-09 05:58:12]  *** Contents of shared directory: ***
[2025-10-09 05:58:12] total 408324
[2025-10-09 05:58:12] -rw-r--r--. 3 boincer umatlas 218911484 Oct  8 20:46 ATLAS.root_0
[2025-10-09 05:58:12] -rw-r--r--. 2 boincer umatlas     15120 Oct  8 20:46 start_atlas.sh
[2025-10-09 05:58:12] -rw-r--r--. 2 boincer umatlas    569682 Oct  8 20:46 input.tar.gz
[2025-10-09 05:58:12] -rw-------. 1 boincer umatlas 195406072 Oct  9 03:43 HITS.pool.root.1
[2025-10-09 05:58:12] -rw-------. 1 boincer umatlas   3205120 Oct  9 03:45 result.tar.gz
05:58:14 (6286): run_atlas exited; CPU time 44035.265565
05:58:14 (6286): called boinc_finish(0)

</stderr_txt>
]]>

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