Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
20:40:27 (3239674): wrapper (7.7.26015): starting
20:40:27 (3239674): wrapper: running run_atlas (--nthreads 9)
[2025-10-08 20:40:27] Arguments: --nthreads 9
[2025-10-08 20:40:27] Threads: 9
[2025-10-08 20:40:27] Checking for CVMFS
[2025-10-08 20:40:27] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-08 20:40:27] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-08 20:40:27] Running cvmfs_config stat atlas.cern.ch
[2025-10-08 20:40:28] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-08 20:40:28] 2.13.2.0 112940 133084 372928 151490 2 271 31811859 40960000 29120 16776704 0 355622720 99.819 172771712 32001 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-10-08 20:40:28] CVMFS is ok
[2025-10-08 20:40:28] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-08 20:40:28] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-08 20:40:28] Further information can be found at the LHC@home message board.
[2025-10-08 20:40:28] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-08 20:40:28] Checking for apptainer binary...
[2025-10-08 20:40:28] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-08 20:40:28] Running /usr/bin/apptainer --version
[2025-10-08 20:40:28] apptainer version 1.4.3-1.el9
[2025-10-08 20:40:28] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-08 20:40:28] c8-7-3.aglt2.org
[2025-10-08 20:40:28] apptainer works
[2025-10-08 20:40:28] Set ATHENA_PROC_NUMBER=9
[2025-10-08 20:40:28] Set ATHENA_CORE_NUMBER=9
[2025-10-08 20:40:28] Starting ATLAS job with PandaID=6836603400
[2025-10-08 20:40:28] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/6 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-08 21:31:20]  *** The last 200 lines of the pilot log: ***
[2025-10-08 21:31:20] 2025-10-09 01:29:56,989 | INFO     | time since job start (2947s) is within the limit (172800.0s)
[2025-10-08 21:31:20] 2025-10-09 01:29:58,996 | INFO     | time since job start (2949s) is within the limit (172800.0s)
[2025-10-08 21:31:20] 2025-10-09 01:30:01,003 | INFO     | time since job start (2952s) is within the limit (172800.0s)
[2025-10-08 21:31:20] 2025-10-09 01:30:03,014 | INFO     | time since job start (2954s) is within the limit (172800.0s)
[2025-10-08 21:31:20] 2025-10-09 01:30:05,022 | INFO     | time since job start (2956s) is within the limit (172800.0s)
[2025-10-08 21:31:20] 2025-10-09 01:30:07,040 | INFO     | time since job start (2958s) is within the limit (172800.0s)
[2025-10-08 21:31:20] 2025-10-09 01:30:09,070 | INFO     | time since job start (2960s) is within the limit (172800.0s)
[2025-10-08 21:31:20] 2025-10-09 01:30:11,090 | INFO     | time since job start (2962s) is within the limit (172800.0s)
[2025-10-08 21:31:20] 2025-10-09 01:30:13,097 | INFO     | time since job start (2964s) is within the limit (172800.0s)
[2025-10-08 21:31:20] 2025-10-09 01:30:15,104 | INFO     | time since job start (2966s) is within the limit (172800.0s)
[2025-10-08 21:31:20] 2025-10-09 01:30:17,111 | INFO     | time since job start (2968s) is within the limit (172800.0s)
[2025-10-08 21:31:20] 2025-10-09 01:30:20,021 | INFO     | PID=3244027 has CPU usage=2.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-08 21:31:20] 2025-10-09 01:30:20,021 | INFO     | .. there are 44 such processes running
[2025-10-08 21:31:20] 2025-10-09 01:30:21,023 | INFO     | time since job start (2972s) is within the limit (172800.0s)
[2025-10-08 21:31:20] 2025-10-09 01:30:23,033 | INFO     | time since job start (2974s) is within the limit (172800.0s)
[2025-10-08 21:31:20] 2025-10-09 01:30:25,042 | INFO     | time since job start (2976s) is within the limit (172800.0s)
[2025-10-08 21:31:20] 2025-10-09 01:30:27,049 | INFO     | time since job start (2978s) is within the limit (172800.0s)
[2025-10-08 21:31:20] 2025-10-09 01:30:29,057 | INFO     | time since job start (2980s) is within the limit (172800.0s)
[2025-10-08 21:31:20] 2025-10-09 01:30:31,063 | INFO     | time since job start (2982s) is within the limit (172800.0s)
[2025-10-08 21:31:20] 2025-10-09 01:30:33,071 | INFO     | time since job start (2984s) is within the limit (172800.0s)
[2025-10-08 21:31:20] 2025-10-09 01:30:35,077 | INFO     | time since job start (2986s) is within the limit (172800.0s)
[2025-10-08 21:31:20] 2025-10-09 01:30:37,086 | INFO     | time since job start (2988s) is within the limit (172800.0s)
[2025-10-08 21:31:20] 2025-10-09 01:30:39,096 | INFO     | time since job start (2990s) is within the limit (172800.0s)
[2025-10-08 21:31:20] 2025-10-09 01:30:41,103 | INFO     | time since job start (2992s) is within the limit (172800.0s)
[2025-10-08 21:31:20] 2025-10-09 01:30:43,496 | INFO     | PID=3244027 has CPU usage=2.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-08 21:31:20] 2025-10-09 01:30:43,497 | INFO     | .. there are 43 such processes running
[2025-10-08 21:31:20] 2025-10-09 01:30:43,832 | INFO     | CPU arch script returned: x86-64-v4
[2025-10-08 21:31:20] 2025-10-09 01:30:43,841 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 3782.425453125006
[2025-10-08 21:31:20] 2025-10-09 01:30:43,951 | INFO     | using path: /tmp/boinchome/slots/6/PanDA_Pilot-6836603400/memory_monitor_summary.json (trf name=prmon)
[2025-10-08 21:31:20] 2025-10-09 01:30:43,952 | INFO     | extracted standard info from prmon json
[2025-10-08 21:31:20] 2025-10-09 01:30:43,952 | INFO     | extracted standard memory fields from prmon json
[2025-10-08 21:31:20] 2025-10-09 01:30:43,952 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-08 21:31:20] 2025-10-09 01:30:43,952 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-08 21:31:20] 2025-10-09 01:30:43,952 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-08 21:31:20] 2025-10-09 01:30:43,953 | INFO     | fitting pss+swap vs Time
[2025-10-08 21:31:20] 2025-10-09 01:30:43,953 | INFO     | sum of square deviations: 21358540.0
[2025-10-08 21:31:20] 2025-10-09 01:30:43,953 | INFO     | sum of deviations: -16025614.999999918
[2025-10-08 21:31:20] 2025-10-09 01:30:43,954 | INFO     | mean x: 1759972015.0
[2025-10-08 21:31:20] 2025-10-09 01:30:43,954 | INFO     | mean y: 2255644.1951219514
[2025-10-08 21:31:20] 2025-10-09 01:30:43,954 | INFO     | -- intersect: 1322787568.3418136
[2025-10-08 21:31:20] 2025-10-09 01:30:43,954 | INFO     | intersect: 1322787568.3418136
[2025-10-08 21:31:20] 2025-10-09 01:30:43,954 | INFO     | chi2: 0.003910717293360903
[2025-10-08 21:31:20] 2025-10-09 01:30:43,954 | INFO     | -- intersect: 1322787568.3418136
[2025-10-08 21:31:20] 2025-10-09 01:30:43,954 | INFO     | current memory leak: -0.75 B/s (using 41 data points, chi2=0.00)
[2025-10-08 21:31:20] 2025-10-09 01:30:43,954 | INFO     | could have reported an average CPU frequency of 3793 MHz (5 samples)
[2025-10-08 21:31:20] 2025-10-09 01:30:43,954 | INFO     | ..............................
[2025-10-08 21:31:20] 2025-10-09 01:30:43,954 | INFO     | . Timing measurements:
[2025-10-08 21:31:20] 2025-10-09 01:30:43,954 | INFO     | . get job = 0 s
[2025-10-08 21:31:20] 2025-10-09 01:30:43,954 | INFO     | . initial setup = 2 s
[2025-10-08 21:31:20] 2025-10-09 01:30:43,954 | INFO     | . payload setup = 11 s
[2025-10-08 21:31:20] 2025-10-09 01:30:43,954 | INFO     | . stage-in = 0 s
[2025-10-08 21:31:20] 2025-10-09 01:30:43,954 | INFO     | . payload execution = 2891 s
[2025-10-08 21:31:20] 2025-10-09 01:30:43,978 | INFO     | . stage-out = 3 s
[2025-10-08 21:31:20] 2025-10-09 01:30:43,978 | INFO     | . log creation = 0 s
[2025-10-08 21:31:20] 2025-10-09 01:30:43,978 | INFO     | ..............................
[2025-10-08 21:31:20] 2025-10-09 01:30:43,993 | INFO     | sufficient remaining disk space (167414595584 B)
[2025-10-08 21:31:20] 2025-10-09 01:30:43,993 | INFO     | work directory size check will use 2537553920 B as a max limit (10% grace limit added)
[2025-10-08 21:31:20] 2025-10-09 01:30:43,994 | INFO     | size of work directory /tmp/boinchome/slots/6/PanDA_Pilot-6836603400: 4050729 B (within 2537553920 B limit)
[2025-10-08 21:31:20] 2025-10-09 01:30:43,994 | INFO     | pfn file=/tmp/boinchome/slots/6/PanDA_Pilot-6836603400/HITS.46676269._009638.pool.root.1 does not exist (skip from workdir size calculation)
[2025-10-08 21:31:20] 2025-10-09 01:30:43,994 | INFO     | total size of present files: 0 B (workdir size: 4050729 B)
[2025-10-08 21:31:20] 2025-10-09 01:30:43,994 | INFO     | output file size check: skipping output file /tmp/boinchome/slots/6/PanDA_Pilot-6836603400/HITS.46676269._009638.pool.root.1 since it does not exist
[2025-10-08 21:31:20] 2025-10-09 01:30:44,499 | INFO     | time since job start (2995s) is within the limit (172800.0s)
[2025-10-08 21:31:20] 2025-10-09 01:30:44,499 | INFO     | 
[2025-10-08 21:31:20] 2025-10-09 01:30:44,499 | INFO     | job summary report
[2025-10-08 21:31:20] 2025-10-09 01:30:44,499 | INFO     | --------------------------------------------------
[2025-10-08 21:31:20] 2025-10-09 01:30:44,499 | INFO     | PanDA job id: 6836603400
[2025-10-08 21:31:20] 2025-10-09 01:30:44,499 | INFO     | task id: 46676269
[2025-10-08 21:31:20] 2025-10-09 01:30:44,499 | INFO     | errors: (none)
[2025-10-08 21:31:20] 2025-10-09 01:30:44,499 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-08 21:31:20] 2025-10-09 01:30:44,499 | INFO     | pilot state: finished 
[2025-10-08 21:31:20] 2025-10-09 01:30:44,499 | INFO     | transexitcode: 0
[2025-10-08 21:31:20] 2025-10-09 01:30:44,499 | INFO     | exeerrorcode: 0
[2025-10-08 21:31:20] 2025-10-09 01:30:44,499 | INFO     | exeerrordiag: 
[2025-10-08 21:31:20] 2025-10-09 01:30:44,499 | INFO     | exitcode: 0
[2025-10-08 21:31:20] 2025-10-09 01:30:44,500 | INFO     | exitmsg: OK
[2025-10-08 21:31:20] 2025-10-09 01:30:44,500 | INFO     | cpuconsumptiontime: 21133 s
[2025-10-08 21:31:20] 2025-10-09 01:30:44,500 | INFO     | nevents: 400
[2025-10-08 21:31:20] 2025-10-09 01:30:44,500 | INFO     | neventsw: 0
[2025-10-08 21:31:20] 2025-10-09 01:30:44,500 | INFO     | pid: 3251439
[2025-10-08 21:31:20] 2025-10-09 01:30:44,500 | INFO     | pgrp: 3251439
[2025-10-08 21:31:20] 2025-10-09 01:30:44,500 | INFO     | corecount: 9
[2025-10-08 21:31:20] 2025-10-09 01:30:44,500 | INFO     | event service: False
[2025-10-08 21:31:20] 2025-10-09 01:30:44,500 | INFO     | sizes: {0: 2348852, 8: 2349114, 11: 2349142, 2907: 2374488, 2910: 2383486, 2912: 2383542, 2975: 2383924}
[2025-10-08 21:31:20] 2025-10-09 01:30:44,500 | INFO     | --------------------------------------------------
[2025-10-08 21:31:20] 2025-10-09 01:30:44,500 | INFO     | 
[2025-10-08 21:31:20] 2025-10-09 01:30:44,500 | INFO     | executing command: ls -lF /tmp/boinchome/slots/6
[2025-10-08 21:31:20] 2025-10-09 01:30:44,788 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-08 21:31:20] 2025-10-09 01:30:44,788 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-08 21:31:20] 2025-10-09 01:30:44,788 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-08 21:31:20] 2025-10-09 01:30:44,788 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-08 21:31:20] 2025-10-09 01:30:44,788 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-08 21:31:20] 2025-10-09 01:30:44,789 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-08 21:31:20] 2025-10-09 01:30:44,789 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-08 21:31:20] 2025-10-09 01:30:44,789 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-08 21:31:20] 2025-10-09 01:30:44,789 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-08 21:31:20] 2025-10-09 01:30:44,789 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-08 21:31:20] 2025-10-09 01:30:44,789 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-08 21:31:20] 2025-10-09 01:30:44,789 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-08 21:31:20] 2025-10-09 01:30:44,789 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-08 21:31:20] 2025-10-09 01:30:44,789 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-08 21:31:20] 2025-10-09 01:30:44,789 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-08 21:31:20] 2025-10-09 01:30:44,789 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-08 21:31:20] 2025-10-09 01:30:44,789 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-08 21:31:20] 2025-10-09 01:30:44,789 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-08 21:31:20] 2025-10-09 01:30:44,789 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-08 21:31:20] 2025-10-09 01:30:44,789 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-08 21:31:20] 2025-10-09 01:30:44,789 | INFO     | job 6836603400 has completed (purged errors)
[2025-10-08 21:31:20] 2025-10-09 01:30:44,789 | INFO     | overall cleanup function is called
[2025-10-08 21:31:20] 2025-10-09 01:30:45,180 | INFO     | number of running child processes to parent process 3251439: 1
[2025-10-08 21:31:20] 2025-10-09 01:30:45,181 | INFO     | maximum number of monitored processes: 6
[2025-10-08 21:31:20] 2025-10-09 01:30:45,181 | INFO     | aborting job monitoring since job object (job id=6836603400) has expired
[2025-10-08 21:31:20] 2025-10-09 01:30:45,797 | INFO     | --- collectZombieJob: --- 10, [3251439]
[2025-10-08 21:31:20] 2025-10-09 01:30:45,797 | INFO     | zombie collector waiting for pid 3251439
[2025-10-08 21:31:20] 2025-10-09 01:30:45,797 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-08 21:31:20] 2025-10-09 01:30:45,797 | INFO     | collected zombie processes
[2025-10-08 21:31:20] 2025-10-09 01:30:45,797 | INFO     | will attempt to kill all subprocesses of pid=3251439
[2025-10-08 21:31:20] 2025-10-09 01:30:46,977 | INFO     | process IDs to be killed: [3251439] (in reverse order)
[2025-10-08 21:31:20] 2025-10-09 01:30:47,748 | WARNING  | found no corresponding commands to process id(s)
[2025-10-08 21:31:20] 2025-10-09 01:30:47,748 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-08 21:31:20] 2025-10-09 01:30:47,796 | INFO     | did not find any defunct processes belonging to 3251439
[2025-10-08 21:31:20] 2025-10-09 01:30:47,841 | INFO     | did not find any defunct processes belonging to 3251439
[2025-10-08 21:31:20] 2025-10-09 01:30:47,841 | INFO     | ready for new job
[2025-10-08 21:31:20] 2025-10-09 01:30:47,841 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-08 21:31:20] 2025-10-09 01:30:47,846 | INFO     | ***************************************
[2025-10-08 21:31:20] 2025-10-09 01:30:47,846 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-08 21:31:20] 2025-10-09 01:30:47,847 | INFO     | ***************************************
[2025-10-08 21:31:20] 2025-10-09 01:30:47,847 | INFO     | 
[2025-10-08 21:31:20] 2025-10-09 01:30:47,855 | INFO     | architecture information:
[2025-10-08 21:31:20] 2025-10-09 01:30:47,867 | INFO     | executing command: cat /etc/os-release
[2025-10-08 21:31:20] 2025-10-09 01:30:47,951 | INFO     | cat /etc/os-release:
[2025-10-08 21:31:20] NAME="CentOS Linux"
[2025-10-08 21:31:20] VERSION="7 (Core)"
[2025-10-08 21:31:20] ID="centos"
[2025-10-08 21:31:20] ID_LIKE="rhel fedora"
[2025-10-08 21:31:20] VERSION_ID="7"
[2025-10-08 21:31:20] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-08 21:31:20] ANSI_COLOR="0;31"
[2025-10-08 21:31:20] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-08 21:31:20] HOME_URL="https://www.centos.org/"
[2025-10-08 21:31:20] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-08 21:31:20] 
[2025-10-08 21:31:20] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-08 21:31:20] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-08 21:31:20] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-08 21:31:20] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-08 21:31:20] 
[2025-10-08 21:31:20] 2025-10-09 01:30:47,951 | INFO     | ***************************************
[2025-10-08 21:31:20] 2025-10-09 01:30:48,455 | INFO     | executing command: df -mP /tmp/boinchome/slots/6
[2025-10-08 21:31:20] 2025-10-09 01:30:48,547 | INFO     | sufficient remaining disk space (167419838464 B)
[2025-10-08 21:31:20] 2025-10-09 01:30:48,547 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-08 21:31:20] 2025-10-09 01:30:48,547 | INFO     | current server update state: UPDATING_FINAL
[2025-10-08 21:31:20] 2025-10-09 01:30:48,547 | INFO     | update_server=False
[2025-10-08 21:31:20] 2025-10-09 01:30:48,547 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-08 21:31:20] 2025-10-09 01:30:48,547 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-08 21:31:20] 2025-10-09 01:30:48,699 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-08 21:31:20] 2025-10-09 01:30:48,700 | INFO     | aborting loop
[2025-10-08 21:31:20] 2025-10-09 01:30:49,159 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-08 21:31:20] 2025-10-09 01:30:49,253 | INFO     | all data control threads have been joined
[2025-10-08 21:31:20] 2025-10-09 01:30:49,553 | INFO     | [job] retrieve thread has finished
[2025-10-08 21:31:20] 2025-10-09 01:30:49,587 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-08 21:31:20] 2025-10-09 01:30:49,613 | INFO     | all payload control threads have been joined
[2025-10-08 21:31:20] 2025-10-09 01:30:49,707 | INFO     | [job] job monitor thread has finished
[2025-10-08 21:31:20] 2025-10-09 01:30:49,876 | INFO     | all job control threads have been joined
[2025-10-08 21:31:20] 2025-10-09 01:30:50,019 | INFO     | [payload] validate_post thread has finished
[2025-10-08 21:31:20] 2025-10-09 01:30:50,022 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-08 21:31:20] 2025-10-09 01:30:50,074 | INFO     | [job] create_data_payload thread has finished
[2025-10-08 21:31:20] 2025-10-09 01:30:50,074 | INFO     | [job] validate thread has finished
[2025-10-08 21:31:20] 2025-10-09 01:30:50,165 | INFO     | [job] queue monitor thread has finished
[2025-10-08 21:31:20] 2025-10-09 01:30:50,259 | INFO     | [data] control thread has finished
[2025-10-08 21:31:20] 2025-10-09 01:30:50,495 | INFO     | [payload] failed_post thread has finished
[2025-10-08 21:31:20] 2025-10-09 01:30:50,555 | INFO     | [data] copytool_out thread has finished
[2025-10-08 21:31:20] 2025-10-09 01:30:50,619 | INFO     | [payload] control thread has finished
[2025-10-08 21:31:20] 2025-10-09 01:30:50,640 | INFO     | [payload] validate_pre thread has finished
[2025-10-08 21:31:20] 2025-10-09 01:30:50,896 | INFO     | [job] control thread has finished
[2025-10-08 21:31:20] 2025-10-09 01:30:50,957 | INFO     | [data] copytool_in thread has finished
[2025-10-08 21:31:20] 2025-10-09 01:30:51,093 | INFO     | [payload] execute_payloads thread has finished
[2025-10-08 21:31:20] 2025-10-09 01:30:54,031 | INFO     | [data] queue_monitor thread has finished
[2025-10-08 21:31:20] 2025-10-09 01:30:54,482 | INFO     | [monitor] cgroup control has ended
[2025-10-08 21:31:20] 2025-10-09 01:30:56,490 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139870905775936)>', '<ExcThread(monitor, started 139870391473920)>']
[2025-10-08 21:31:20] 2025-10-09 01:31:01,516 | INFO     | all workflow threads have been joined
[2025-10-08 21:31:20] 2025-10-09 01:31:01,516 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-08 21:31:20] 2025-10-09 01:31:01,516 | INFO     | traces error code: 0
[2025-10-08 21:31:20] 2025-10-09 01:31:01,516 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-08 21:31:20] 2025-10-09 01:31:18,760 | INFO     | PID=3244027 has CPU usage=5.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-08 21:31:20] 2025-10-09 01:31:18,760 | INFO     | .. there are 46 such processes running
[2025-10-08 21:31:20] 2025-10-09 01:31:18,760 | INFO     | found 0 job(s) in 20 queues
[2025-10-08 21:31:20] 2025-10-09 01:31:18,760 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-08 21:31:20] 2025-10-09 01:31:18,760 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-08 21:31:20] 2025-10-09 01:31:18,760 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-08 21:31:20] 2025-10-09 01:31:18,761 | INFO     | [monitor] control thread has ended
[2025-10-08 21:31:20] 2025-10-09 01:31:19,147 [wrapper] ==== pilot stdout END ====
[2025-10-08 21:31:20] 2025-10-09 01:31:19,160 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-08 21:31:20] 2025-10-09 01:31:19,173 [wrapper] pilotpid: 3244027
[2025-10-08 21:31:20] 2025-10-09 01:31:19,208 [wrapper] Pilot exit status: 0
[2025-10-08 21:31:20] 2025-10-09 01:31:19,428 [wrapper] pandaids: 6836603400
[2025-10-08 21:31:20] 2025-10-09 01:31:19,829 [wrapper] cleanup supervisor_pilot 3748880 3244028
[2025-10-08 21:31:20] 2025-10-09 01:31:19,878 [wrapper] Test setup, not cleaning
[2025-10-08 21:31:20] 2025-10-09 01:31:19,891 [wrapper] apfmon messages muted
[2025-10-08 21:31:20] 2025-10-09 01:31:19,932 [wrapper] ==== wrapper stdout END ====
[2025-10-08 21:31:20] 2025-10-09 01:31:19,975 [wrapper] ==== wrapper stderr END ====
[2025-10-08 21:31:20]  *** Error codes and diagnostics ***
[2025-10-08 21:31:21]     "exeErrorCode": 0,
[2025-10-08 21:31:21]     "exeErrorDiag": "",
[2025-10-08 21:31:21]     "pilotErrorCode": 0,
[2025-10-08 21:31:21]     "pilotErrorDiag": "",
[2025-10-08 21:31:21]  *** Listing of results directory ***
[2025-10-08 21:31:21] total 410840
[2025-10-08 21:31:21] -rw-r--r--. 1 boincer umatlas    557409 Oct  8 18:57 pilot3.tar.gz
[2025-10-08 21:31:21] -rwx------. 1 boincer umatlas     36292 Oct  8 19:03 runpilot2-wrapper.sh
[2025-10-08 21:31:21] -rw-r--r--. 1 boincer umatlas      5112 Oct  8 19:05 queuedata.json
[2025-10-08 21:31:21] -rw-r--r--. 1 boincer umatlas       100 Oct  8 20:40 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-08 21:31:21] -rwxr-xr-x. 1 boincer umatlas      7986 Oct  8 20:40 run_atlas
[2025-10-08 21:31:21] -rw-r--r--. 1 boincer umatlas       105 Oct  8 20:40 job.xml
[2025-10-08 21:31:21] -rw-r--r--. 2 boincer umatlas 223117295 Oct  8 20:40 EVNT.46676267._000389.pool.root.1
[2025-10-08 21:31:21] -rw-r--r--. 2 boincer umatlas     15120 Oct  8 20:40 start_atlas.sh
[2025-10-08 21:31:21] drwxrwx--x. 2 boincer umatlas      4096 Oct  8 20:40 shared
[2025-10-08 21:31:21] -rw-r--r--. 2 boincer umatlas    569681 Oct  8 20:40 input.tar.gz
[2025-10-08 21:31:21] -rw-r--r--. 1 boincer umatlas         0 Oct  8 20:40 boinc_lockfile
[2025-10-08 21:31:21] -rw-r--r--. 1 boincer umatlas      2548 Oct  8 20:40 pandaJob.out
[2025-10-08 21:31:21] -rw-------. 1 boincer umatlas    979298 Oct  8 20:40 agis_schedconf.cvmfs.json
[2025-10-08 21:31:21] -rw-------. 1 boincer umatlas   1560401 Oct  8 20:40 agis_ddmendpoints.agis.ALL.json
[2025-10-08 21:31:21] drwx------. 5 boincer umatlas      4096 Oct  8 20:40 pilot3
[2025-10-08 21:31:21] -rw-r--r--. 1 boincer umatlas      7164 Oct  8 21:22 init_data.xml
[2025-10-08 21:31:21] -rw-------. 1 boincer umatlas 192136546 Oct  8 21:28 HITS.46676269._009638.pool.root.1
[2025-10-08 21:31:21] -rw-r--r--. 1 boincer umatlas       529 Oct  8 21:28 boinc_task_state.xml
[2025-10-08 21:31:21] -rw-------. 1 boincer umatlas      1049 Oct  8 21:29 memory_monitor_summary.json
[2025-10-08 21:31:21] -rw-------. 1 boincer umatlas    323883 Oct  8 21:29 log.46676269._009638.job.log.tgz.1
[2025-10-08 21:31:21] -rw-------. 1 boincer umatlas        95 Oct  8 21:30 pilot_heartbeat.json
[2025-10-08 21:31:21] -rw-------. 1 boincer umatlas      7780 Oct  8 21:30 heartbeat.json
[2025-10-08 21:31:21] -rw-------. 1 boincer umatlas       823 Oct  8 21:31 pilotlog.txt
[2025-10-08 21:31:21] -rw-------. 1 boincer umatlas    446900 Oct  8 21:31 log.46676269._009638.job.log.1
[2025-10-08 21:31:21] -rw-r--r--. 1 boincer umatlas      8192 Oct  8 21:31 boinc_mmap_file
[2025-10-08 21:31:21] -rw-------. 1 boincer umatlas       357 Oct  8 21:31 output.list
[2025-10-08 21:31:21] -rw-r--r--. 1 boincer umatlas       620 Oct  8 21:31 runtime_log
[2025-10-08 21:31:21] -rw-------. 1 boincer umatlas    788480 Oct  8 21:31 result.tar.gz
[2025-10-08 21:31:21] -rw-r--r--. 1 boincer umatlas        27 Oct  8 21:31 wrapper_checkpoint.txt
[2025-10-08 21:31:21] -rw-r--r--. 1 boincer umatlas      8693 Oct  8 21:31 runtime_log.err
[2025-10-08 21:31:21] -rw-------. 1 boincer umatlas       655 Oct  8 21:31 clhKDmXNsQ8n9Rq4apOajLDm4fhM0noT9bVof3QYDmg4MMDmAY7Dvn.diag
[2025-10-08 21:31:21] -rw-r--r--. 1 boincer umatlas     22430 Oct  8 21:31 stderr.txt
[2025-10-08 21:31:21] HITS file was successfully produced:
[2025-10-08 21:31:21] -rw-------. 1 boincer umatlas 192136546 Oct  8 21:28 shared/HITS.pool.root.1
[2025-10-08 21:31:21]  *** Contents of shared directory: ***
[2025-10-08 21:31:21] total 406880
[2025-10-08 21:31:21] -rw-r--r--. 2 boincer umatlas 223117295 Oct  8 20:40 ATLAS.root_0
[2025-10-08 21:31:21] -rw-r--r--. 2 boincer umatlas     15120 Oct  8 20:40 start_atlas.sh
[2025-10-08 21:31:21] -rw-r--r--. 2 boincer umatlas    569681 Oct  8 20:40 input.tar.gz
[2025-10-08 21:31:21] -rw-------. 1 boincer umatlas 192136546 Oct  8 21:28 HITS.pool.root.1
[2025-10-08 21:31:21] -rw-------. 1 boincer umatlas    788480 Oct  8 21:31 result.tar.gz
21:31:22 (3239674): run_atlas exited; CPU time 21225.971347
21:31:22 (3239674): called boinc_finish(0)

</stderr_txt>
]]>

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