Stderr output

<core_client_version>8.2.5</core_client_version>
<![CDATA[
<stderr_txt>
03:23:52 (1778462): wrapper (7.7.26015): starting
03:23:52 (1778462): wrapper: running run_atlas (--nthreads 4)
[2025-10-09 03:23:52] Arguments: --nthreads 4
[2025-10-09 03:23:52] Threads: 4
[2025-10-09 03:23:52] Checking for CVMFS
[2025-10-09 03:23:52] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-09 03:23:52] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-09 03:23:52] Running cvmfs_config stat atlas.cern.ch
[2025-10-09 03:23:52] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-09 03:23:52] 2.13.2.0 15963 39628 45208 151490 2 1 22112314 33554432 0 130560 3 17705986 99.990 1216624 301 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://127.0.0.1:25468 1
[2025-10-09 03:23:52] CVMFS is ok
[2025-10-09 03:23:52] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-09 03:23:52] Checking for apptainer binary...
[2025-10-09 03:23:52] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-09 03:23:52] Running /usr/bin/apptainer --version
[2025-10-09 03:23:53] apptainer version 1.4.0
[2025-10-09 03:23:53] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-09 03:23:53] INFO: /etc/singularity/ exists; cleanup by system administrator is not complete (see https://apptainer.org/docs/admin/latest/singularity_migration.html) Evangelos-Katikos
[2025-10-09 03:23:53] apptainer works
[2025-10-09 03:23:53] Set ATHENA_PROC_NUMBER=4
[2025-10-09 03:23:53] Set ATHENA_CORE_NUMBER=4
[2025-10-09 03:23:53] Starting ATLAS job with PandaID=6836602351
[2025-10-09 03:23:53] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/ek/BOINC/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-09 04:27:28]  *** The last 200 lines of the pilot log: ***
[2025-10-09 04:27:28]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-10-09 04:27:28]  replicas=None
[2025-10-09 04:27:28]  scope=mc23_13p6TeV
[2025-10-09 04:27:28]  status=None
[2025-10-09 04:27:28]  status_code=0
[2025-10-09 04:27:28]  storage_token=
[2025-10-09 04:27:28]  surl=/home/ek/BOINC/slots/1/PanDA_Pilot-6836602351/log.46676269._008986.job.log.tgz.1
[2025-10-09 04:27:28]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/71/99/log.46676269._008986.job.log.tgz.1
[2025-10-09 04:27:28]  workdir=None
[2025-10-09 04:27:28] ]
[2025-10-09 04:27:28] 2025-10-09 01:26:51,773 | INFO     | transferring file log.46676269._008986.job.log.tgz.1 from /home/ek/BOINC/slots/1/PanDA_Pilot-6836602351/log.46676269._008986.job.log.tgz.1 to /home/ek/BOINC/slots/
[2025-10-09 04:27:28] 2025-10-09 01:26:51,773 | INFO     | executing command: /usr/bin/env mv /home/ek/BOINC/slots/1/PanDA_Pilot-6836602351/log.46676269._008986.job.log.tgz.1 /home/ek/BOINC/slots/1/log.46676269._008986.job
[2025-10-09 04:27:28] 2025-10-09 01:26:51,783 | INFO     | adding to output.list: log.46676269._008986.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/71/99/log.46676269._008986.job.log.tg
[2025-10-09 04:27:28] 2025-10-09 01:26:51,783 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-09 04:27:28] 2025-10-09 01:26:51,783 | INFO     | summary of transferred files:
[2025-10-09 04:27:28] 2025-10-09 01:26:51,783 | INFO     |  -- lfn=log.46676269._008986.job.log.tgz.1, status_code=0, status=transferred
[2025-10-09 04:27:28] 2025-10-09 01:26:51,784 | INFO     | stage-out finished correctly
[2025-10-09 04:27:28] 2025-10-09 01:26:52,065 | INFO     | PID=1782335 has CPU usage=3.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-09 04:27:28] 2025-10-09 01:26:52,704 | WARNING  | process 1789050 can no longer be monitored (due to stat problems) - aborting
[2025-10-09 04:27:28] 2025-10-09 01:26:52,704 | INFO     | using path: /home/ek/BOINC/slots/1/PanDA_Pilot-6836602351/memory_monitor_summary.json (trf name=prmon)
[2025-10-09 04:27:28] 2025-10-09 01:26:52,792 | INFO     | number of running child processes to parent process 1789050: 1
[2025-10-09 04:27:28] 2025-10-09 01:26:52,792 | INFO     | maximum number of monitored processes: 6
[2025-10-09 04:27:28] 2025-10-09 01:26:53,066 | INFO     | time since job start (3769s) is within the limit (172800.0s)
[2025-10-09 04:27:28] 2025-10-09 01:26:54,972 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-09 04:27:28] 2025-10-09 01:26:55,071 | INFO     | time since job start (3771s) is within the limit (172800.0s)
[2025-10-09 04:27:28] 2025-10-09 01:26:55,094 | INFO     | job 6836602351 has state=finished
[2025-10-09 04:27:28] 2025-10-09 01:26:55,094 | INFO     | preparing for final server update for job 6836602351 in state='finished'
[2025-10-09 04:27:28] 2025-10-09 01:26:55,094 | INFO     | this job has now completed (state=finished)
[2025-10-09 04:27:28] 2025-10-09 01:26:55,094 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-09 04:27:28] 2025-10-09 01:26:55,094 | INFO     | log transfer has been attempted: DONE
[2025-10-09 04:27:28] 2025-10-09 01:26:55,095 | INFO     | job 6836602351 has finished - writing final server update
[2025-10-09 04:27:28] 2025-10-09 01:26:55,095 | INFO     | total number of processed events: 400 (read)
[2025-10-09 04:27:28] 2025-10-09 01:26:55,095 | INFO     | executing command: lscpu
[2025-10-09 04:27:28] 2025-10-09 01:26:55,110 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-09 04:27:28] 2025-10-09 01:26:55,295 | INFO     | monitor loop #289: job 0:6836602351 is in state 'finished'
[2025-10-09 04:27:28] 2025-10-09 01:26:55,295 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-09 04:27:28] 2025-10-09 01:26:56,814 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-09 04:27:28] 2025-10-09 01:26:56,816 | INFO     | found 12 cores (12 cores per socket, 1 socket) HT, CPU MHz: 3863.37775
[2025-10-09 04:27:28] 2025-10-09 01:26:56,818 | INFO     | using path: /home/ek/BOINC/slots/1/PanDA_Pilot-6836602351/memory_monitor_summary.json (trf name=prmon)
[2025-10-09 04:27:28] 2025-10-09 01:26:56,818 | INFO     | extracted standard info from prmon json
[2025-10-09 04:27:28] 2025-10-09 01:26:56,818 | INFO     | extracted standard memory fields from prmon json
[2025-10-09 04:27:28] 2025-10-09 01:26:56,818 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-09 04:27:28] 2025-10-09 01:26:56,819 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-09 04:27:28] 2025-10-09 01:26:56,819 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-09 04:27:28] 2025-10-09 01:26:56,819 | INFO     | fitting pss+swap vs Time
[2025-10-09 04:27:28] 2025-10-09 01:26:56,819 | INFO     | sum of square deviations: 51573060.0
[2025-10-09 04:27:28] 2025-10-09 01:26:56,819 | INFO     | sum of deviations: -5422596891.0
[2025-10-09 04:27:28] 2025-10-09 01:26:56,819 | INFO     | mean x: 1759971415.0
[2025-10-09 04:27:28] 2025-10-09 01:26:56,819 | INFO     | mean y: 2704360.6
[2025-10-09 04:27:28] 2025-10-09 01:26:56,819 | INFO     | -- intersect: 185053107094.66058
[2025-10-09 04:27:28] 2025-10-09 01:26:56,819 | INFO     | intersect: 185053107094.66058
[2025-10-09 04:27:28] 2025-10-09 01:26:56,820 | INFO     | chi2: 0.12638835045146662
[2025-10-09 04:27:28] 2025-10-09 01:26:56,820 | INFO     | -- intersect: 185053107094.66058
[2025-10-09 04:27:28] 2025-10-09 01:26:56,820 | INFO     | current memory leak: -105.14 B/s (using 55 data points, chi2=0.13)
[2025-10-09 04:27:28] 2025-10-09 01:26:56,820 | INFO     | could have reported an average CPU frequency of 4037 MHz (6 samples)
[2025-10-09 04:27:28] 2025-10-09 01:26:56,820 | INFO     | ..............................
[2025-10-09 04:27:28] 2025-10-09 01:26:56,820 | INFO     | . Timing measurements:
[2025-10-09 04:27:28] 2025-10-09 01:26:56,820 | INFO     | . get job = 0 s
[2025-10-09 04:27:28] 2025-10-09 01:26:56,820 | INFO     | . initial setup = 1 s
[2025-10-09 04:27:28] 2025-10-09 01:26:56,820 | INFO     | . payload setup = 3 s
[2025-10-09 04:27:28] 2025-10-09 01:26:56,820 | INFO     | . stage-in = 0 s
[2025-10-09 04:27:28] 2025-10-09 01:26:56,820 | INFO     | . payload execution = 3746 s
[2025-10-09 04:27:28] 2025-10-09 01:26:56,820 | INFO     | . stage-out = 0 s
[2025-10-09 04:27:28] 2025-10-09 01:26:56,820 | INFO     | . log creation = 0 s
[2025-10-09 04:27:28] 2025-10-09 01:26:56,820 | INFO     | ..............................
[2025-10-09 04:27:28] 2025-10-09 01:26:56,893 | INFO     | 
[2025-10-09 04:27:28] 2025-10-09 01:26:56,893 | INFO     | job summary report
[2025-10-09 04:27:28] 2025-10-09 01:26:56,893 | INFO     | --------------------------------------------------
[2025-10-09 04:27:28] 2025-10-09 01:26:56,893 | INFO     | PanDA job id: 6836602351
[2025-10-09 04:27:28] 2025-10-09 01:26:56,893 | INFO     | task id: 46676269
[2025-10-09 04:27:28] 2025-10-09 01:26:56,893 | INFO     | errors: (none)
[2025-10-09 04:27:28] 2025-10-09 01:26:56,893 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-09 04:27:28] 2025-10-09 01:26:56,893 | INFO     | pilot state: finished 
[2025-10-09 04:27:28] 2025-10-09 01:26:56,894 | INFO     | transexitcode: 0
[2025-10-09 04:27:28] 2025-10-09 01:26:56,894 | INFO     | exeerrorcode: 0
[2025-10-09 04:27:28] 2025-10-09 01:26:56,894 | INFO     | exeerrordiag: 
[2025-10-09 04:27:28] 2025-10-09 01:26:56,894 | INFO     | exitcode: 0
[2025-10-09 04:27:28] 2025-10-09 01:26:56,894 | INFO     | exitmsg: OK
[2025-10-09 04:27:28] 2025-10-09 01:26:56,894 | INFO     | cpuconsumptiontime: 14113 s
[2025-10-09 04:27:28] 2025-10-09 01:26:56,894 | INFO     | nevents: 400
[2025-10-09 04:27:28] 2025-10-09 01:26:56,894 | INFO     | neventsw: 0
[2025-10-09 04:27:28] 2025-10-09 01:26:56,894 | INFO     | pid: 1789050
[2025-10-09 04:27:28] 2025-10-09 01:26:56,894 | INFO     | pgrp: 1789050
[2025-10-09 04:27:28] 2025-10-09 01:26:56,894 | INFO     | corecount: 4
[2025-10-09 04:27:28] 2025-10-09 01:26:56,894 | INFO     | event service: False
[2025-10-09 04:27:28] 2025-10-09 01:26:56,894 | INFO     | sizes: {0: 2348852, 2: 2349114, 11: 2349142, 3753: 2375045, 3755: 2384043, 3758: 2384099, 3760: 2384421}
[2025-10-09 04:27:28] 2025-10-09 01:26:56,894 | INFO     | --------------------------------------------------
[2025-10-09 04:27:28] 2025-10-09 01:26:56,894 | INFO     | 
[2025-10-09 04:27:28] 2025-10-09 01:26:56,894 | INFO     | executing command: ls -lF /home/ek/BOINC/slots/1
[2025-10-09 04:27:28] 2025-10-09 01:26:56,902 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-09 04:27:28] 2025-10-09 01:26:56,903 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-09 04:27:28] 2025-10-09 01:26:56,903 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-09 04:27:28] 2025-10-09 01:26:56,903 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-09 04:27:28] 2025-10-09 01:26:56,903 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-09 04:27:28] 2025-10-09 01:26:56,903 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-09 04:27:28] 2025-10-09 01:26:56,903 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-09 04:27:28] 2025-10-09 01:26:56,903 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-09 04:27:28] 2025-10-09 01:26:56,903 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-09 04:27:28] 2025-10-09 01:26:56,903 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-09 04:27:28] 2025-10-09 01:26:56,903 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-09 04:27:28] 2025-10-09 01:26:56,903 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-09 04:27:28] 2025-10-09 01:26:56,903 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-09 04:27:28] 2025-10-09 01:26:56,903 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-09 04:27:28] 2025-10-09 01:26:56,903 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-09 04:27:28] 2025-10-09 01:26:56,903 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-09 04:27:28] 2025-10-09 01:26:56,903 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-09 04:27:28] 2025-10-09 01:26:56,903 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-09 04:27:28] 2025-10-09 01:26:56,903 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-09 04:27:28] 2025-10-09 01:26:56,903 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-09 04:27:28] 2025-10-09 01:26:56,903 | INFO     | job 6836602351 has completed (purged errors)
[2025-10-09 04:27:28] 2025-10-09 01:26:56,903 | INFO     | overall cleanup function is called
[2025-10-09 04:27:28] 2025-10-09 01:26:57,909 | INFO     | --- collectZombieJob: --- 10, [1789050]
[2025-10-09 04:27:28] 2025-10-09 01:26:57,909 | INFO     | zombie collector waiting for pid 1789050
[2025-10-09 04:27:28] 2025-10-09 01:26:57,909 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-09 04:27:28] 2025-10-09 01:26:57,909 | INFO     | collected zombie processes
[2025-10-09 04:27:28] 2025-10-09 01:26:57,909 | INFO     | will attempt to kill all subprocesses of pid=1789050
[2025-10-09 04:27:28] 2025-10-09 01:26:58,007 | INFO     | process IDs to be killed: [1789050] (in reverse order)
[2025-10-09 04:27:28] 2025-10-09 01:26:58,039 | WARNING  | found no corresponding commands to process id(s)
[2025-10-09 04:27:28] 2025-10-09 01:26:58,039 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-09 04:27:28] 2025-10-09 01:26:58,043 | INFO     | did not find any defunct processes belonging to 1789050
[2025-10-09 04:27:28] 2025-10-09 01:26:58,046 | INFO     | did not find any defunct processes belonging to 1789050
[2025-10-09 04:27:28] 2025-10-09 01:26:58,046 | INFO     | ready for new job
[2025-10-09 04:27:28] 2025-10-09 01:26:58,046 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-09 04:27:28] 2025-10-09 01:26:58,047 | INFO     | ***************************************
[2025-10-09 04:27:28] 2025-10-09 01:26:58,047 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-09 04:27:28] 2025-10-09 01:26:58,047 | INFO     | ***************************************
[2025-10-09 04:27:28] 2025-10-09 01:26:58,047 | INFO     | 
[2025-10-09 04:27:28] 2025-10-09 01:26:58,047 | INFO     | architecture information:
[2025-10-09 04:27:28] 2025-10-09 01:26:58,047 | INFO     | executing command: cat /etc/os-release
[2025-10-09 04:27:28] 2025-10-09 01:26:58,054 | INFO     | cat /etc/os-release:
[2025-10-09 04:27:28] NAME="CentOS Linux"
[2025-10-09 04:27:28] VERSION="7 (Core)"
[2025-10-09 04:27:28] ID="centos"
[2025-10-09 04:27:28] ID_LIKE="rhel fedora"
[2025-10-09 04:27:28] VERSION_ID="7"
[2025-10-09 04:27:28] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-09 04:27:28] ANSI_COLOR="0;31"
[2025-10-09 04:27:28] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-09 04:27:28] HOME_URL="https://www.centos.org/"
[2025-10-09 04:27:28] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-09 04:27:28] 
[2025-10-09 04:27:28] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-09 04:27:28] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-09 04:27:28] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-09 04:27:28] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-09 04:27:28] 
[2025-10-09 04:27:28] 2025-10-09 01:26:58,054 | INFO     | ***************************************
[2025-10-09 04:27:28] 2025-10-09 01:26:58,557 | INFO     | executing command: df -mP /home/ek/BOINC/slots/1
[2025-10-09 04:27:28] 2025-10-09 01:26:58,565 | INFO     | sufficient remaining disk space (136940879872 B)
[2025-10-09 04:27:28] 2025-10-09 01:26:58,566 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-09 04:27:28] 2025-10-09 01:26:58,566 | INFO     | current server update state: UPDATING_FINAL
[2025-10-09 04:27:28] 2025-10-09 01:26:58,566 | INFO     | update_server=False
[2025-10-09 04:27:28] 2025-10-09 01:26:58,566 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-09 04:27:28] 2025-10-09 01:26:58,566 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-09 04:27:28] 2025-10-09 01:26:58,761 | INFO     | all payload control threads have been joined
[2025-10-09 04:27:28] 2025-10-09 01:26:58,803 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-09 04:27:28] 2025-10-09 01:26:58,803 | INFO     | aborting loop
[2025-10-09 04:27:28] 2025-10-09 01:26:59,511 | INFO     | all data control threads have been joined
[2025-10-09 04:27:28] 2025-10-09 01:26:59,567 | INFO     | [job] queue monitor thread has finished
[2025-10-09 04:27:28] 2025-10-09 01:26:59,571 | INFO     | [job] retrieve thread has finished
[2025-10-09 04:27:28] 2025-10-09 01:26:59,591 | INFO     | [payload] validate_pre thread has finished
[2025-10-09 04:27:28] 2025-10-09 01:26:59,601 | INFO     | all job control threads have been joined
[2025-10-09 04:27:28] 2025-10-09 01:26:59,658 | INFO     | [payload] failed_post thread has finished
[2025-10-09 04:27:28] 2025-10-09 01:26:59,766 | INFO     | [payload] control thread has finished
[2025-10-09 04:27:28] 2025-10-09 01:26:59,808 | INFO     | [job] job monitor thread has finished
[2025-10-09 04:27:28] 2025-10-09 01:26:59,831 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-09 04:27:28] 2025-10-09 01:27:00,116 | INFO     | [payload] execute_payloads thread has finished
[2025-10-09 04:27:28] 2025-10-09 01:27:00,137 | INFO     | [data] copytool_in thread has finished
[2025-10-09 04:27:28] 2025-10-09 01:27:00,516 | INFO     | [data] control thread has finished
[2025-10-09 04:27:28] 2025-10-09 01:27:00,606 | INFO     | [job] control thread has finished
[2025-10-09 04:27:28] 2025-10-09 01:27:00,755 | INFO     | [payload] validate_post thread has finished
[2025-10-09 04:27:28] 2025-10-09 01:27:00,943 | INFO     | [job] validate thread has finished
[2025-10-09 04:27:28] 2025-10-09 01:27:01,010 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-09 04:27:28] 2025-10-09 01:27:01,068 | INFO     | [job] create_data_payload thread has finished
[2025-10-09 04:27:28] 2025-10-09 01:27:01,837 | INFO     | [data] copytool_out thread has finished
[2025-10-09 04:27:28] 2025-10-09 01:27:05,015 | INFO     | [data] queue_monitor thread has finished
[2025-10-09 04:27:28] 2025-10-09 01:27:08,869 | INFO     | job.realtimelogging is not enabled
[2025-10-09 04:27:28] 2025-10-09 01:27:09,194 | INFO     | [monitor] cgroup control has ended
[2025-10-09 04:27:28] 2025-10-09 01:27:09,873 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-09 04:27:28] 2025-10-09 01:27:10,864 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140592610383680)>', '<ExcThread(monitor, started 140591996335872)>']
[2025-10-09 04:27:28] 2025-10-09 01:27:15,889 | INFO     | all workflow threads have been joined
[2025-10-09 04:27:28] 2025-10-09 01:27:15,889 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-09 04:27:28] 2025-10-09 01:27:15,889 | INFO     | traces error code: 0
[2025-10-09 04:27:28] 2025-10-09 01:27:15,889 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-09 04:27:28] 2025-10-09 01:27:28,247 | INFO     | PID=1782335 has CPU usage=1.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-09 04:27:28] 2025-10-09 01:27:28,248 | INFO     | found 0 job(s) in 20 queues
[2025-10-09 04:27:28] 2025-10-09 01:27:28,248 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-09 04:27:28] 2025-10-09 01:27:28,248 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-09 04:27:28] 2025-10-09 01:27:28,248 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-09 04:27:28] 2025-10-09 01:27:28,248 | INFO     | [monitor] control thread has ended
[2025-10-09 04:27:28] 2025-10-09 01:27:28,302 [wrapper] ==== pilot stdout END ====
[2025-10-09 04:27:28] 2025-10-09 01:27:28,304 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-09 04:27:28] 2025-10-09 01:27:28,305 [wrapper] pilotpid: 1782335
[2025-10-09 04:27:28] 2025-10-09 01:27:28,307 [wrapper] Pilot exit status: 0
[2025-10-09 04:27:28] 2025-10-09 01:27:28,313 [wrapper] pandaids: 6836602351
[2025-10-09 04:27:28] 2025-10-09 01:27:28,335 [wrapper] cleanup supervisor_pilot 1836011 1782336
[2025-10-09 04:27:28] 2025-10-09 01:27:28,336 [wrapper] Test setup, not cleaning
[2025-10-09 04:27:28] 2025-10-09 01:27:28,337 [wrapper] apfmon messages muted
[2025-10-09 04:27:28] 2025-10-09 01:27:28,339 [wrapper] ==== wrapper stdout END ====
[2025-10-09 04:27:28] 2025-10-09 01:27:28,340 [wrapper] ==== wrapper stderr END ====
[2025-10-09 04:27:28]  *** Error codes and diagnostics ***
[2025-10-09 04:27:28]     "exeErrorCode": 0,
[2025-10-09 04:27:28]     "exeErrorDiag": "",
[2025-10-09 04:27:28]     "pilotErrorCode": 0,
[2025-10-09 04:27:28]     "pilotErrorDiag": "",
[2025-10-09 04:27:28]  *** Listing of results directory ***
[2025-10-09 04:27:28] total 407900
[2025-10-09 04:27:28] -rw-r--r-- 1 ek ek    557409 Oct  9 01:57 pilot3.tar.gz
[2025-10-09 04:27:28] -rw-r--r-- 1 ek ek      5112 Oct  9 02:01 queuedata.json
[2025-10-09 04:27:28] -rwx------ 1 ek ek     36292 Oct  9 02:01 runpilot2-wrapper.sh
[2025-10-09 04:27:28] -rw-rw-r-- 1 ek ek       100 Oct  9 03:23 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-09 04:27:28] -rwxr-xr-x 1 ek ek      7986 Oct  9 03:23 run_atlas
[2025-10-09 04:27:28] -rw-rw-r-- 1 ek ek       105 Oct  9 03:23 job.xml
[2025-10-09 04:27:28] -rw-r--r-- 2 ek ek 219426589 Oct  9 03:23 EVNT.46676267._000360.pool.root.1
[2025-10-09 04:27:28] -rw-r--r-- 2 ek ek    569680 Oct  9 03:23 input.tar.gz
[2025-10-09 04:27:28] -rw-r--r-- 2 ek ek     15120 Oct  9 03:23 start_atlas.sh
[2025-10-09 04:27:28] drwxrwx--x 2 ek ek      4096 Oct  9 03:23 shared
[2025-10-09 04:27:28] -rw-rw-r-- 1 ek ek         0 Oct  9 03:23 boinc_setup_complete
[2025-10-09 04:27:28] -rw-rw-r-- 1 ek ek      9843 Oct  9 03:23 init_data.xml
[2025-10-09 04:27:28] -rw-rw-r-- 1 ek ek         0 Oct  9 03:23 boinc_lockfile
[2025-10-09 04:27:28] -rw-rw-r-- 1 ek ek      2548 Oct  9 03:23 pandaJob.out
[2025-10-09 04:27:28] -rw------- 1 ek ek    979298 Oct  9 03:24 agis_schedconf.cvmfs.json
[2025-10-09 04:27:28] -rw------- 1 ek ek   1560401 Oct  9 03:24 agis_ddmendpoints.agis.ALL.json
[2025-10-09 04:27:28] drwx------ 5 ek ek      4096 Oct  9 03:24 pilot3
[2025-10-09 04:27:28] -rw------- 1 ek ek 192699313 Oct  9 04:26 HITS.46676269._008986.pool.root.1
[2025-10-09 04:27:28] -rw------- 1 ek ek        95 Oct  9 04:26 pilot_heartbeat.json
[2025-10-09 04:27:28] -rw-rw-r-- 1 ek ek       529 Oct  9 04:26 boinc_task_state.xml
[2025-10-09 04:27:28] -rw------- 1 ek ek      1039 Oct  9 04:26 memory_monitor_summary.json
[2025-10-09 04:27:28] -rw------- 1 ek ek    260377 Oct  9 04:26 log.46676269._008986.job.log.tgz.1
[2025-10-09 04:27:28] -rw------- 1 ek ek      7760 Oct  9 04:26 heartbeat.json
[2025-10-09 04:27:28] -rw-rw-r-- 1 ek ek        27 Oct  9 04:27 wrapper_checkpoint.txt
[2025-10-09 04:27:28] -rw-rw-r-- 1 ek ek      8192 Oct  9 04:27 boinc_mmap_file
[2025-10-09 04:27:28] -rw------- 1 ek ek       747 Oct  9 04:27 pilotlog.txt
[2025-10-09 04:27:28] -rw------- 1 ek ek    566366 Oct  9 04:27 log.46676269._008986.job.log.1
[2025-10-09 04:27:28] -rw------- 1 ek ek       357 Oct  9 04:27 output.list
[2025-10-09 04:27:28] -rw-rw-r-- 1 ek ek       620 Oct  9 04:27 runtime_log
[2025-10-09 04:27:28] -rw------- 1 ek ek    849920 Oct  9 04:27 result.tar.gz
[2025-10-09 04:27:28] -rw-rw-r-- 1 ek ek      8898 Oct  9 04:27 runtime_log.err
[2025-10-09 04:27:28] -rw------- 1 ek ek       663 Oct  9 04:27 9CqLDmcLsQ8n9Rq4apOajLDm4fhM0noT9bVof3QYDmo0MMDmZek3Gm.diag
[2025-10-09 04:27:28] -rw-rw-r-- 1 ek ek     21799 Oct  9 04:27 stderr.txt
[2025-10-09 04:27:28] HITS file was successfully produced:
[2025-10-09 04:27:28] -rw------- 1 ek ek 192699313 Oct  9 04:26 shared/HITS.pool.root.1
[2025-10-09 04:27:28]  *** Contents of shared directory: ***
[2025-10-09 04:27:28] total 403884
[2025-10-09 04:27:28] -rw-r--r-- 2 ek ek 219426589 Oct  9 03:23 ATLAS.root_0
[2025-10-09 04:27:28] -rw-r--r-- 2 ek ek    569680 Oct  9 03:23 input.tar.gz
[2025-10-09 04:27:28] -rw-r--r-- 2 ek ek     15120 Oct  9 03:23 start_atlas.sh
[2025-10-09 04:27:28] -rw------- 1 ek ek 192699313 Oct  9 04:26 HITS.pool.root.1
[2025-10-09 04:27:28] -rw------- 1 ek ek    849920 Oct  9 04:27 result.tar.gz
04:27:30 (1778462): run_atlas exited; CPU time 14141.690941
04:27:30 (1778462): called boinc_finish(0)

</stderr_txt>
]]>

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