Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:04:31 (118262): wrapper (7.7.26015): starting
00:04:31 (118262): wrapper: running run_atlas (--nthreads 9)
[2025-10-09 00:04:31] Arguments: --nthreads 9
[2025-10-09 00:04:31] Threads: 9
[2025-10-09 00:04:31] Checking for CVMFS
[2025-10-09 00:04:32] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-09 00:04:32] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-09 00:04:32] Running cvmfs_config stat atlas.cern.ch
[2025-10-09 00:04:35] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-09 00:04:35] 2.13.2.0 129325 104329 475352 151495 3 176 37237357 39288833 19209 16776704 0 157571372 99.510 206378376 29775 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-09 00:04:35] CVMFS is ok
[2025-10-09 00:04:35] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-09 00:04:35] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-09 00:04:35] Further information can be found at the LHC@home message board.
[2025-10-09 00:04:35] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-09 00:04:35] Checking for apptainer binary...
[2025-10-09 00:04:35] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-09 00:04:35] Running /usr/bin/apptainer --version
[2025-10-09 00:04:35] apptainer version 1.4.3-1.el9
[2025-10-09 00:04:35] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-09 00:04:36] c-211-28.aglt2.org
[2025-10-09 00:04:36] apptainer works
[2025-10-09 00:04:36] Set ATHENA_PROC_NUMBER=9
[2025-10-09 00:04:36] Set ATHENA_CORE_NUMBER=9
[2025-10-09 00:04:37] Starting ATLAS job with PandaID=6836604941
[2025-10-09 00:04:37] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-09 13:27:56]  *** The last 200 lines of the pilot log: ***
[2025-10-09 13:27:56] 2025-10-09 16:01:56,947 | INFO     | intersect: -13436737460.590761
[2025-10-09 13:27:56] 2025-10-09 16:01:56,949 | INFO     | chi2: 7.572733320364596
[2025-10-09 13:27:56] 2025-10-09 16:01:56,949 | INFO     | current chi2=7.572733320364596 (change=37.2783787360914 %)
[2025-10-09 13:27:56] 2025-10-09 16:01:56,963 | INFO     | sum of square deviations: 100536330084.03972
[2025-10-09 13:27:56] 2025-10-09 16:01:57,121 | INFO     | sum of deviations: 599405753397.586
[2025-10-09 13:27:56] 2025-10-09 16:01:57,121 | INFO     | mean x: 1760004716.0931587
[2025-10-09 13:27:56] 2025-10-09 16:01:57,122 | INFO     | mean y: 2518997.443959243
[2025-10-09 13:27:56] 2025-10-09 16:01:57,122 | INFO     | -- intersect: -10490771855.23856
[2025-10-09 13:27:56] 2025-10-09 16:01:57,122 | INFO     | intersect: -10490771855.23856
[2025-10-09 13:27:56] 2025-10-09 16:01:57,123 | INFO     | chi2: 5.071538693403715
[2025-10-09 13:27:56] 2025-10-09 16:01:57,123 | INFO     | current chi2=5.071538693403715 (change=33.02895429097797 %)
[2025-10-09 13:27:56] 2025-10-09 16:01:57,124 | INFO     | sum of square deviations: 98356878739.9179
[2025-10-09 13:27:56] 2025-10-09 16:01:57,263 | INFO     | time since job start (42859s) is within the limit (172800.0s)
[2025-10-09 13:27:56] 2025-10-09 16:01:57,269 | INFO     | sum of deviations: 439659903638.7974
[2025-10-09 13:27:56] 2025-10-09 16:01:57,269 | INFO     | mean x: 1760004868.5982404
[2025-10-09 13:27:56] 2025-10-09 16:01:57,269 | INFO     | mean y: 2530174.3313782993
[2025-10-09 13:27:56] 2025-10-09 16:01:57,269 | INFO     | -- intersect: -7864774897.211833
[2025-10-09 13:27:56] 2025-10-09 16:01:57,270 | INFO     | intersect: -7864774897.211833
[2025-10-09 13:27:56] 2025-10-09 16:01:57,277 | INFO     | chi2: 3.2534888741638395
[2025-10-09 13:27:56] 2025-10-09 16:01:57,277 | INFO     | current chi2=3.2534888741638395 (change=35.84809126280586 %)
[2025-10-09 13:27:56] 2025-10-09 16:01:57,278 | INFO     | sum of square deviations: 96209314593.56555
[2025-10-09 13:27:56] 2025-10-09 16:01:57,307 | INFO     | sum of deviations: 307948596763.1305
[2025-10-09 13:27:56] 2025-10-09 16:01:57,307 | INFO     | mean x: 1760005021.0974889
[2025-10-09 13:27:56] 2025-10-09 16:01:57,312 | INFO     | mean y: 2539522.6646971935
[2025-10-09 13:27:56] 2025-10-09 16:01:57,312 | INFO     | -- intersect: -5630917890.816177
[2025-10-09 13:27:56] 2025-10-09 16:01:57,312 | INFO     | intersect: -5630917890.816177
[2025-10-09 13:27:56] 2025-10-09 16:01:57,313 | INFO     | chi2: 2.021724245668303
[2025-10-09 13:27:56] 2025-10-09 16:01:57,314 | INFO     | current chi2=2.021724245668303 (change=37.85980761382211 %)
[2025-10-09 13:27:56] 2025-10-09 16:01:57,315 | INFO     | sum of square deviations: 94093240145.71283
[2025-10-09 13:27:56] 2025-10-09 16:01:57,348 | INFO     | sum of deviations: 215888176449.85834
[2025-10-09 13:27:56] 2025-10-09 16:01:57,348 | INFO     | mean x: 1760005173.5967262
[2025-10-09 13:27:56] 2025-10-09 16:01:57,348 | INFO     | mean y: 2546153.117559524
[2025-10-09 13:27:56] 2025-10-09 16:01:57,349 | INFO     | -- intersect: -4035621805.406355
[2025-10-09 13:27:56] 2025-10-09 16:01:57,349 | INFO     | intersect: -4035621805.406355
[2025-10-09 13:27:56] 2025-10-09 16:01:57,354 | INFO     | chi2: 1.4271872203029123
[2025-10-09 13:27:56] 2025-10-09 16:01:57,354 | INFO     | current chi2=1.4271872203029123 (change=29.407424214218686 %)
[2025-10-09 13:27:56] 2025-10-09 16:01:57,356 | INFO     | sum of square deviations: 92008545191.42137
[2025-10-09 13:27:56] 2025-10-09 16:01:57,387 | INFO     | sum of deviations: 161550145471.33264
[2025-10-09 13:27:56] 2025-10-09 16:01:57,387 | INFO     | mean x: 1760005326.0914543
[2025-10-09 13:27:56] 2025-10-09 16:01:57,387 | INFO     | mean y: 2550124.584707646
[2025-10-09 13:27:56] 2025-10-09 16:01:57,388 | INFO     | -- intersect: -3087696720.0845065
[2025-10-09 13:27:56] 2025-10-09 16:01:57,388 | INFO     | intersect: -3087696720.0845065
[2025-10-09 13:27:56] 2025-10-09 16:01:57,389 | INFO     | chi2: 1.2215196016285406
[2025-10-09 13:27:56] 2025-10-09 16:01:57,389 | INFO     | current chi2=1.2215196016285406 (change=14.410696490872446 %)
[2025-10-09 13:27:56] 2025-10-09 16:01:57,389 | INFO     | left removable region: 60
[2025-10-09 13:27:56] 2025-10-09 16:01:57,390 | INFO     | sum of square deviations: 77898965887.85735
[2025-10-09 13:27:56] 2025-10-09 16:01:57,414 | INFO     | sum of deviations: 64191005517.93822
[2025-10-09 13:27:56] 2025-10-09 16:01:57,414 | INFO     | mean x: 1760006058.126783
[2025-10-09 13:27:56] 2025-10-09 16:01:57,414 | INFO     | mean y: 2563722.388272583
[2025-10-09 13:27:56] 2025-10-09 16:01:57,419 | INFO     | -- intersect: -1447732277.0664706
[2025-10-09 13:27:56] 2025-10-09 16:01:57,419 | INFO     | intersect: -1447732277.0664706
[2025-10-09 13:27:56] 2025-10-09 16:01:57,420 | INFO     | chi2: 0.04682417344971761
[2025-10-09 13:27:56] 2025-10-09 16:01:57,420 | INFO     | -- intersect: -1447732277.0664706
[2025-10-09 13:27:56] 2025-10-09 16:01:57,420 | INFO     | current memory leak: 0.82 B/s (using 631 data points, chi2=0.05)
[2025-10-09 13:27:56] 2025-10-09 16:01:57,421 | INFO     | could have reported an average CPU frequency of 2899 MHz (26 samples)
[2025-10-09 13:27:56] 2025-10-09 16:01:57,422 | INFO     | ..............................
[2025-10-09 13:27:56] 2025-10-09 16:01:57,422 | INFO     | . Timing measurements:
[2025-10-09 13:27:56] 2025-10-09 16:01:57,422 | INFO     | . get job = 3 s
[2025-10-09 13:27:56] 2025-10-09 16:01:57,422 | INFO     | . initial setup = 19 s
[2025-10-09 13:27:56] 2025-10-09 16:01:57,422 | INFO     | . payload setup = 94 s
[2025-10-09 13:27:56] 2025-10-09 16:01:57,427 | INFO     | . stage-in = 1 s
[2025-10-09 13:27:56] 2025-10-09 16:01:57,427 | INFO     | . payload execution = 42545 s
[2025-10-09 13:27:56] 2025-10-09 16:01:57,427 | INFO     | . stage-out = 7 s
[2025-10-09 13:27:56] 2025-10-09 16:01:57,427 | INFO     | . log creation = 0 s
[2025-10-09 13:27:56] 2025-10-09 16:01:57,427 | INFO     | ..............................
[2025-10-09 13:27:56] 2025-10-09 16:01:58,191 | INFO     | 
[2025-10-09 13:27:56] 2025-10-09 16:01:58,192 | INFO     | job summary report
[2025-10-09 13:27:56] 2025-10-09 16:01:58,192 | INFO     | --------------------------------------------------
[2025-10-09 13:27:56] 2025-10-09 16:01:58,192 | INFO     | PanDA job id: 6836604941
[2025-10-09 13:27:56] 2025-10-09 16:01:58,192 | INFO     | task id: 46676269
[2025-10-09 13:27:56] 2025-10-09 16:01:58,192 | INFO     | errors: (none)
[2025-10-09 13:27:56] 2025-10-09 16:01:58,192 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-09 13:27:56] 2025-10-09 16:01:58,193 | INFO     | pilot state: finished 
[2025-10-09 13:27:56] 2025-10-09 16:01:58,193 | INFO     | transexitcode: 0
[2025-10-09 13:27:56] 2025-10-09 16:01:58,193 | INFO     | exeerrorcode: 0
[2025-10-09 13:27:56] 2025-10-09 16:01:58,193 | INFO     | exeerrordiag: 
[2025-10-09 13:27:56] 2025-10-09 16:01:58,193 | INFO     | exitcode: 0
[2025-10-09 13:27:56] 2025-10-09 16:01:58,193 | INFO     | exitmsg: OK
[2025-10-09 13:27:56] 2025-10-09 16:01:58,193 | INFO     | cpuconsumptiontime: 76790 s
[2025-10-09 13:27:56] 2025-10-09 16:01:58,194 | INFO     | nevents: 400
[2025-10-09 13:27:56] 2025-10-09 16:01:58,194 | INFO     | neventsw: 0
[2025-10-09 13:27:56] 2025-10-09 16:01:58,194 | INFO     | pid: 173238
[2025-10-09 13:27:56] 2025-10-09 16:01:58,194 | INFO     | pgrp: 173238
[2025-10-09 13:27:56] 2025-10-09 16:01:58,194 | INFO     | corecount: 9
[2025-10-09 13:27:56] 2025-10-09 16:01:58,194 | INFO     | event service: False
[2025-10-09 13:27:56] 2025-10-09 16:01:58,194 | INFO     | sizes: {0: 2348028, 2: 2348629, 4: 2348713, 6: 2348741, 7: 2348769, 9: 2349096, 11: 2349124, 23: 2349152, 36: 2349180, 50: 2349208, 63: 2349236, 75: 2349746, 79: 2
[2025-10-09 13:27:56] 2025-10-09 16:01:58,199 | INFO     | --------------------------------------------------
[2025-10-09 13:27:56] 2025-10-09 16:01:58,199 | INFO     | 
[2025-10-09 13:27:56] 2025-10-09 16:01:58,199 | INFO     | executing command: ls -lF /tmp/boinchome/slots/3
[2025-10-09 13:27:56] 2025-10-09 16:01:58,390 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-09 13:27:56] 2025-10-09 16:01:58,390 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-09 13:27:56] 2025-10-09 16:01:58,391 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-09 13:27:56] 2025-10-09 16:01:58,391 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-09 13:27:56] 2025-10-09 16:01:58,391 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-09 13:27:56] 2025-10-09 16:01:58,391 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-09 13:27:56] 2025-10-09 16:01:58,391 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-09 13:27:56] 2025-10-09 16:01:58,391 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-09 13:27:56] 2025-10-09 16:01:58,392 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-09 13:27:56] 2025-10-09 16:01:58,392 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-09 13:27:56] 2025-10-09 16:01:58,392 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-09 13:27:56] 2025-10-09 16:01:58,392 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-09 13:27:56] 2025-10-09 16:01:58,392 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-09 13:27:56] 2025-10-09 16:01:58,392 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-09 13:27:56] 2025-10-09 16:01:58,393 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-09 13:27:56] 2025-10-09 16:01:58,393 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-09 13:27:56] 2025-10-09 16:01:58,393 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-09 13:27:56] 2025-10-09 16:01:58,393 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-09 13:27:56] 2025-10-09 16:01:58,393 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-09 13:27:56] 2025-10-09 16:01:58,393 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-09 13:27:56] 2025-10-09 16:01:58,445 | INFO     | job 6836604941 has completed (purged errors)
[2025-10-09 13:27:56] 2025-10-09 16:01:58,445 | INFO     | overall cleanup function is called
[2025-10-09 13:27:56] 2025-10-09 16:01:59,477 | INFO     | --- collectZombieJob: --- 10, [173238]
[2025-10-09 13:27:56] 2025-10-09 16:01:59,505 | INFO     | zombie collector waiting for pid 173238
[2025-10-09 13:27:56] 2025-10-09 16:01:59,505 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-09 13:27:56] 2025-10-09 16:01:59,505 | INFO     | collected zombie processes
[2025-10-09 13:27:56] 2025-10-09 16:01:59,505 | INFO     | will attempt to kill all subprocesses of pid=173238
[2025-10-09 13:27:56] 2025-10-09 16:02:03,349 | INFO     | process IDs to be killed: [173238] (in reverse order)
[2025-10-09 13:27:56] 2025-10-09 16:02:04,402 | WARNING  | found no corresponding commands to process id(s)
[2025-10-09 13:27:56] 2025-10-09 16:02:04,466 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-09 13:27:56] 2025-10-09 16:02:04,679 | INFO     | did not find any defunct processes belonging to 173238
[2025-10-09 13:27:56] 2025-10-09 16:02:04,866 | INFO     | did not find any defunct processes belonging to 173238
[2025-10-09 13:27:56] 2025-10-09 16:02:04,866 | INFO     | ready for new job
[2025-10-09 13:27:56] 2025-10-09 16:02:04,867 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-09 13:27:56] 2025-10-09 16:02:04,888 | INFO     | ***************************************
[2025-10-09 13:27:56] 2025-10-09 16:02:04,888 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-09 13:27:56] 2025-10-09 16:02:04,888 | INFO     | ***************************************
[2025-10-09 13:27:56] 2025-10-09 16:02:04,889 | INFO     | 
[2025-10-09 13:27:56] 2025-10-09 16:02:04,936 | INFO     | architecture information:
[2025-10-09 13:27:56] 2025-10-09 16:02:04,965 | INFO     | executing command: cat /etc/os-release
[2025-10-09 13:27:56] 2025-10-09 16:02:05,151 | INFO     | cat /etc/os-release:
[2025-10-09 13:27:56] NAME="CentOS Linux"
[2025-10-09 13:27:56] VERSION="7 (Core)"
[2025-10-09 13:27:56] ID="centos"
[2025-10-09 13:27:56] ID_LIKE="rhel fedora"
[2025-10-09 13:27:56] VERSION_ID="7"
[2025-10-09 13:27:56] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-09 13:27:56] ANSI_COLOR="0;31"
[2025-10-09 13:27:56] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-09 13:27:56] HOME_URL="https://www.centos.org/"
[2025-10-09 13:27:56] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-09 13:27:56] 
[2025-10-09 13:27:56] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-09 13:27:56] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-09 13:27:56] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-09 13:27:56] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-09 13:27:56] 
[2025-10-09 13:27:56] 2025-10-09 16:02:05,151 | INFO     | ***************************************
[2025-10-09 13:27:56] 2025-10-09 16:02:05,655 | INFO     | executing command: df -mP /tmp/boinchome/slots/3
[2025-10-09 13:27:56] 2025-10-09 16:02:05,730 | INFO     | sufficient remaining disk space (52991885312 B)
[2025-10-09 13:27:56] 2025-10-09 16:02:05,730 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-09 13:27:56] 2025-10-09 16:02:05,731 | INFO     | current server update state: UPDATING_FINAL
[2025-10-09 13:27:56] 2025-10-09 16:02:05,731 | INFO     | update_server=False
[2025-10-09 13:27:56] 2025-10-09 16:02:05,731 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-09 13:27:56] 2025-10-09 16:02:05,743 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-09 13:27:56] 2025-10-09 16:02:05,743 | INFO     | aborting loop
[2025-10-09 13:27:56] 2025-10-09 16:02:06,046 | INFO     | all payload control threads have been joined
[2025-10-09 13:27:56] 2025-10-09 16:02:06,672 | INFO     | all data control threads have been joined
[2025-10-09 13:27:56] 2025-10-09 16:02:06,760 | INFO     | [payload] validate_pre thread has finished
[2025-10-09 13:27:56] 2025-10-09 16:02:06,776 | INFO     | [job] retrieve thread has finished
[2025-10-09 13:27:56] 2025-10-09 16:02:06,777 | INFO     | [job] job monitor thread has finished
[2025-10-09 13:27:56] 2025-10-09 16:02:06,834 | INFO     | [job] create_data_payload thread has finished
[2025-10-09 13:27:56] 2025-10-09 16:02:06,868 | INFO     | [data] copytool_in thread has finished
[2025-10-09 13:27:56] 2025-10-09 16:02:06,885 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-09 13:27:56] 2025-10-09 16:02:07,055 | INFO     | [payload] control thread has finished
[2025-10-09 13:27:56] 2025-10-09 16:02:07,156 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-09 13:27:56] 2025-10-09 16:02:07,312 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-09 13:27:56] 2025-10-09 16:02:07,338 | INFO     | all job control threads have been joined
[2025-10-09 13:27:56] 2025-10-09 16:02:07,416 | INFO     | [payload] execute_payloads thread has finished
[2025-10-09 13:27:56] 2025-10-09 16:02:07,531 | INFO     | [payload] validate_post thread has finished
[2025-10-09 13:27:56] 2025-10-09 16:02:07,593 | INFO     | [payload] failed_post thread has finished
[2025-10-09 13:27:56] 2025-10-09 16:02:07,678 | INFO     | [data] control thread has finished
[2025-10-09 13:27:56] 2025-10-09 16:02:07,719 | INFO     | [job] validate thread has finished
[2025-10-09 13:27:56] 2025-10-09 16:02:08,144 | INFO     | [monitor] cgroup control has ended
[2025-10-09 13:27:56] 2025-10-09 16:02:08,322 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-09 13:27:56] 2025-10-09 16:02:08,340 | INFO     | [job] queue monitor thread has finished
[2025-10-09 13:27:56] 2025-10-09 16:02:08,344 | INFO     | [job] control thread has finished
[2025-10-09 13:27:56] 2025-10-09 16:02:09,162 | INFO     | [data] copytool_out thread has finished
[2025-10-09 13:27:56] 2025-10-09 16:02:12,331 | INFO     | [data] queue_monitor thread has finished
[2025-10-09 13:27:56] 2025-10-09 16:02:13,745 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139705173075776)>', '<ExcThread(monitor, started 139704901015296)>']
[2025-10-09 13:27:56] 2025-10-09 16:02:18,772 | INFO     | all workflow threads have been joined
[2025-10-09 13:27:56] 2025-10-09 16:02:18,772 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-09 13:27:56] 2025-10-09 16:02:18,772 | INFO     | traces error code: 0
[2025-10-09 13:27:56] 2025-10-09 16:02:18,773 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-09 13:27:56] 2025-10-09 16:02:32,392 | INFO     | PID=133742 has CPU usage=4.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-10-09 13:27:56] 2025-10-09 16:02:32,392 | INFO     | .. there are 35 such processes running
[2025-10-09 13:27:56] 2025-10-09 16:02:32,392 | INFO     | found 0 job(s) in 20 queues
[2025-10-09 13:27:56] 2025-10-09 16:02:32,392 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-09 13:27:56] 2025-10-09 16:02:32,393 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-09 13:27:56] 2025-10-09 16:02:32,393 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-09 13:27:56] 2025-10-09 16:02:32,393 | INFO     | [monitor] control thread has ended
[2025-10-09 13:27:56] 2025-10-09 16:02:32,881 [wrapper] ==== pilot stdout END ====
[2025-10-09 13:27:56] 2025-10-09 16:02:33,022 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-09 13:27:56] 2025-10-09 16:02:33,171 [wrapper] pilotpid: 133742
[2025-10-09 13:27:56] 2025-10-09 16:02:33,217 [wrapper] Pilot exit status: 0
[2025-10-09 13:27:56] 2025-10-09 16:02:33,381 [wrapper] pandaids: 6836604941
[2025-10-09 13:27:56] 2025-10-09 16:02:33,779 [wrapper] cleanup supervisor_pilot 3108693 133743
[2025-10-09 13:27:56] 2025-10-09 16:02:33,812 [wrapper] Test setup, not cleaning
[2025-10-09 13:27:56] 2025-10-09 16:02:33,831 [wrapper] apfmon messages muted
[2025-10-09 13:27:56] 2025-10-09 16:02:33,879 [wrapper] ==== wrapper stdout END ====
[2025-10-09 13:27:56] 2025-10-09 16:02:33,942 [wrapper] ==== wrapper stderr END ====
[2025-10-09 13:27:56]  *** Error codes and diagnostics ***
[2025-10-09 13:27:56]     "exeErrorCode": 0,
[2025-10-09 13:27:56]     "exeErrorDiag": "",
[2025-10-09 13:27:56]     "pilotErrorCode": 0,
[2025-10-09 13:27:56]     "pilotErrorDiag": "",
[2025-10-09 13:27:56]  *** Listing of results directory ***
[2025-10-09 13:27:56] total 413652
[2025-10-09 13:27:56] -rw-r--r--. 1 boincer umatlas    557409 Oct  8 18:57 pilot3.tar.gz
[2025-10-09 13:27:56] -rwx------. 1 boincer umatlas     36292 Oct  8 19:15 runpilot2-wrapper.sh
[2025-10-09 13:27:56] -rw-r--r--. 1 boincer umatlas      5112 Oct  8 19:15 queuedata.json
[2025-10-09 13:27:56] -rw-r--r--. 1 boincer umatlas       100 Oct  9 00:04 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-09 13:27:56] -rwxr-xr-x. 1 boincer umatlas      7986 Oct  9 00:04 run_atlas
[2025-10-09 13:27:56] -rw-r--r--. 1 boincer umatlas       105 Oct  9 00:04 job.xml
[2025-10-09 13:27:56] -rw-r--r--. 2 boincer umatlas 221016147 Oct  9 00:04 EVNT.46676267._000428.pool.root.1
[2025-10-09 13:27:56] -rw-r--r--. 2 boincer umatlas     15120 Oct  9 00:04 start_atlas.sh
[2025-10-09 13:27:56] drwxrwx--x. 2 boincer umatlas      4096 Oct  9 00:04 shared
[2025-10-09 13:27:56] -rw-r--r--. 2 boincer umatlas    569675 Oct  9 00:04 input.tar.gz
[2025-10-09 13:27:56] -rw-r--r--. 1 boincer umatlas         0 Oct  9 00:04 boinc_lockfile
[2025-10-09 13:27:56] -rw-r--r--. 1 boincer umatlas      2550 Oct  9 00:04 pandaJob.out
[2025-10-09 13:27:56] -rw-------. 1 boincer umatlas    979306 Oct  9 00:07 agis_schedconf.cvmfs.json
[2025-10-09 13:27:56] drwx------. 5 boincer umatlas      4096 Oct  9 00:07 pilot3
[2025-10-09 13:27:56] -rw-------. 1 boincer umatlas 189010918 Oct  9 11:59 HITS.46676269._010529.pool.root.1
[2025-10-09 13:27:56] -rw-r--r--. 1 boincer umatlas       531 Oct  9 12:00 boinc_task_state.xml
[2025-10-09 13:27:56] -rw-------. 1 boincer umatlas      1042 Oct  9 12:00 memory_monitor_summary.json
[2025-10-09 13:27:56] -rw-------. 1 boincer umatlas   1560401 Oct  9 12:01 agis_ddmendpoints.agis.ALL.json
[2025-10-09 13:27:56] -rw-------. 1 boincer umatlas    738750 Oct  9 12:01 log.46676269._010529.job.log.tgz.1
[2025-10-09 13:27:56] -rw-------. 1 boincer umatlas        95 Oct  9 12:01 pilot_heartbeat.json
[2025-10-09 13:27:56] -rw-------. 1 boincer umatlas      7825 Oct  9 12:01 heartbeat.json
[2025-10-09 13:27:56] -rw-------. 1 boincer umatlas       822 Oct  9 12:02 pilotlog.txt
[2025-10-09 13:27:56] -rw-------. 1 boincer umatlas   4082710 Oct  9 12:02 log.46676269._010529.job.log.1
[2025-10-09 13:27:56] -rw-------. 1 boincer umatlas       357 Oct  9 12:02 output.list
[2025-10-09 13:27:56] -rw-r--r--. 1 boincer umatlas       620 Oct  9 12:02 runtime_log
[2025-10-09 13:27:56] -rw-------. 1 boincer umatlas   4843520 Oct  9 12:02 result.tar.gz
[2025-10-09 13:27:56] -rw-r--r--. 1 boincer umatlas      8704 Oct  9 12:02 runtime_log.err
[2025-10-09 13:27:56] -rw-------. 1 boincer umatlas       659 Oct  9 12:02 CdqNDmYYsQ8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmPmYNDmPDTWfn.diag
[2025-10-09 13:27:56] -rw-r--r--. 1 boincer umatlas      6525 Oct  9 13:27 init_data.xml
[2025-10-09 13:27:56] -rw-r--r--. 1 boincer umatlas      8192 Oct  9 13:27 boinc_mmap_file
[2025-10-09 13:27:56] -rw-r--r--. 1 boincer umatlas        28 Oct  9 13:27 wrapper_checkpoint.txt
[2025-10-09 13:27:56] -rw-r--r--. 1 boincer umatlas     21077 Oct  9 13:27 stderr.txt
[2025-10-09 13:27:56] HITS file was successfully produced:
[2025-10-09 13:27:56] -rw-------. 1 boincer umatlas 189010918 Oct  9 11:59 shared/HITS.pool.root.1
[2025-10-09 13:27:56]  *** Contents of shared directory: ***
[2025-10-09 13:27:56] total 405740
[2025-10-09 13:27:56] -rw-r--r--. 2 boincer umatlas 221016147 Oct  9 00:04 ATLAS.root_0
[2025-10-09 13:27:56] -rw-r--r--. 2 boincer umatlas     15120 Oct  9 00:04 start_atlas.sh
[2025-10-09 13:27:56] -rw-r--r--. 2 boincer umatlas    569675 Oct  9 00:04 input.tar.gz
[2025-10-09 13:27:56] -rw-------. 1 boincer umatlas 189010918 Oct  9 11:59 HITS.pool.root.1
[2025-10-09 13:27:56] -rw-------. 1 boincer umatlas   4843520 Oct  9 12:02 result.tar.gz
13:27:58 (118262): run_atlas exited; CPU time 78373.186482
13:27:58 (118262): called boinc_finish(0)

</stderr_txt>
]]>

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