Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:00:41 (3362389): wrapper (7.7.26015): starting
00:00:41 (3362389): wrapper: running run_atlas (--nthreads 9)
[2025-10-09 00:00:41] Arguments: --nthreads 9
[2025-10-09 00:00:41] Threads: 9
[2025-10-09 00:00:41] Checking for CVMFS
[2025-10-09 00:00:42] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-09 00:00:43] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-09 00:00:43] Running cvmfs_config stat atlas.cern.ch
[2025-10-09 00:00:45] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-09 00:00:45] 2.13.2.0 184081 102790 409588 151495 1 328 26546490 39288833 21169 16776704 0 132403604 99.514 172697739 30549 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-09 00:00:45] CVMFS is ok
[2025-10-09 00:00:45] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-09 00:00:45] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-09 00:00:45] Further information can be found at the LHC@home message board.
[2025-10-09 00:00:45] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-09 00:00:45] Checking for apptainer binary...
[2025-10-09 00:00:45] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-09 00:00:45] Running /usr/bin/apptainer --version
[2025-10-09 00:00:46] apptainer version 1.4.3-1.el9
[2025-10-09 00:00:46] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-09 00:00:48] c-211-20.aglt2.org
[2025-10-09 00:00:48] apptainer works
[2025-10-09 00:00:48] Set ATHENA_PROC_NUMBER=9
[2025-10-09 00:00:48] Set ATHENA_CORE_NUMBER=9
[2025-10-09 00:00:48] Starting ATLAS job with PandaID=6836603461
[2025-10-09 00:00:48] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-09 16:18:48]  *** The last 200 lines of the pilot log: ***
[2025-10-09 16:18:48] 2025-10-09 20:17:34,198 | INFO     | mean y: 2561102.5015806113
[2025-10-09 16:18:48] 2025-10-09 20:17:34,198 | INFO     | -- intersect: -5913991048.155726
[2025-10-09 16:18:48] 2025-10-09 20:17:34,198 | INFO     | intersect: -5913991048.155726
[2025-10-09 16:18:48] 2025-10-09 20:17:34,200 | INFO     | chi2: 5.3077592202271076
[2025-10-09 16:18:48] 2025-10-09 20:17:34,200 | INFO     | current chi2=5.3077592202271076 (change=11.518375970539353 %)
[2025-10-09 16:18:48] 2025-10-09 20:17:34,200 | INFO     | right removable region: 948
[2025-10-09 16:18:48] 2025-10-09 20:17:34,219 | INFO     | sum of square deviations: 265011497763.2295
[2025-10-09 16:18:48] 2025-10-09 20:17:34,350 | INFO     | sum of deviations: 537662413305.1856
[2025-10-09 16:18:48] 2025-10-09 20:17:34,350 | INFO     | mean x: 1760012026.9567966
[2025-10-09 16:18:48] 2025-10-09 20:17:34,350 | INFO     | mean y: 2569773.785036881
[2025-10-09 16:18:48] 2025-10-09 20:17:34,351 | INFO     | -- intersect: -3568189690.791829
[2025-10-09 16:18:48] 2025-10-09 20:17:34,351 | INFO     | intersect: -3568189690.791829
[2025-10-09 16:18:48] 2025-10-09 20:17:34,369 | INFO     | chi2: 2.6974829123493
[2025-10-09 16:18:48] 2025-10-09 20:17:34,370 | INFO     | current chi2=2.6974829123493 (change=55.03231043962601 %)
[2025-10-09 16:18:48] 2025-10-09 20:17:34,371 | INFO     | sum of square deviations: 260844622592.21844
[2025-10-09 16:18:48] 2025-10-09 20:17:34,497 | INFO     | sum of deviations: 356610504610.8615
[2025-10-09 16:18:48] 2025-10-09 20:17:34,521 | INFO     | mean x: 1760012179.4565678
[2025-10-09 16:18:48] 2025-10-09 20:17:34,522 | INFO     | mean y: 2576396.691737288
[2025-10-09 16:18:48] 2025-10-09 20:17:34,522 | INFO     | -- intersect: -2403602520.089937
[2025-10-09 16:18:48] 2025-10-09 20:17:34,522 | INFO     | intersect: -2403602520.089937
[2025-10-09 16:18:48] 2025-10-09 20:17:34,523 | INFO     | chi2: 1.4865426808239257
[2025-10-09 16:18:48] 2025-10-09 20:17:34,524 | INFO     | current chi2=1.4865426808239257 (change=44.89148850513898 %)
[2025-10-09 16:18:48] 2025-10-09 20:17:34,525 | INFO     | sum of square deviations: 256721598490.29633
[2025-10-09 16:18:48] 2025-10-09 20:17:34,669 | INFO     | sum of deviations: 251278110497.09244
[2025-10-09 16:18:48] 2025-10-09 20:17:34,669 | INFO     | mean x: 1760012331.9574015
[2025-10-09 16:18:48] 2025-10-09 20:17:34,669 | INFO     | mean y: 2580291.677316294
[2025-10-09 16:18:48] 2025-10-09 20:17:34,669 | INFO     | -- intersect: -1720112990.9548957
[2025-10-09 16:18:48] 2025-10-09 20:17:34,669 | INFO     | intersect: -1720112990.9548957
[2025-10-09 16:18:48] 2025-10-09 20:17:34,671 | INFO     | chi2: 1.1028455446755436
[2025-10-09 16:18:48] 2025-10-09 20:17:34,690 | INFO     | current chi2=1.1028455446755436 (change=25.81137703599035 %)
[2025-10-09 16:18:48] 2025-10-09 20:17:34,692 | INFO     | sum of square deviations: 252642191247.95392
[2025-10-09 16:18:48] 2025-10-09 20:17:34,814 | INFO     | sum of deviations: 171620123180.4957
[2025-10-09 16:18:48] 2025-10-09 20:17:34,814 | INFO     | mean x: 1760012484.4593148
[2025-10-09 16:18:48] 2025-10-09 20:17:34,814 | INFO     | mean y: 2583268.8683083514
[2025-10-09 16:18:48] 2025-10-09 20:17:34,815 | INFO     | -- intersect: -1192995180.9942863
[2025-10-09 16:18:48] 2025-10-09 20:17:34,815 | INFO     | intersect: -1192995180.9942863
[2025-10-09 16:18:48] 2025-10-09 20:17:34,837 | INFO     | chi2: 0.8841879841455992
[2025-10-09 16:18:48] 2025-10-09 20:17:34,838 | INFO     | current chi2=0.8841879841455992 (change=19.82667124926123 %)
[2025-10-09 16:18:48] 2025-10-09 20:17:34,838 | INFO     | left removable region: 40
[2025-10-09 16:18:48] 2025-10-09 20:17:34,839 | INFO     | sum of square deviations: 232125504809.14862
[2025-10-09 16:18:48] 2025-10-09 20:17:34,982 | INFO     | sum of deviations: 187689463518.5034
[2025-10-09 16:18:48] 2025-10-09 20:17:34,982 | INFO     | mean x: 1760012911.454846
[2025-10-09 16:18:48] 2025-10-09 20:17:34,982 | INFO     | mean y: 2587123.4878854626
[2025-10-09 16:18:48] 2025-10-09 20:17:34,983 | INFO     | -- intersect: -1420504576.0140638
[2025-10-09 16:18:48] 2025-10-09 20:17:34,983 | INFO     | intersect: -1420504576.0140638
[2025-10-09 16:18:48] 2025-10-09 20:17:34,984 | INFO     | chi2: 0.08708261784795679
[2025-10-09 16:18:48] 2025-10-09 20:17:35,024 | INFO     | -- intersect: -1420504576.0140638
[2025-10-09 16:18:48] 2025-10-09 20:17:35,024 | INFO     | current memory leak: 0.81 B/s (using 908 data points, chi2=0.09)
[2025-10-09 16:18:48] 2025-10-09 20:17:35,025 | INFO     | could have reported an average CPU frequency of 2900 MHz (35 samples)
[2025-10-09 16:18:48] 2025-10-09 20:17:35,025 | INFO     | ..............................
[2025-10-09 16:18:48] 2025-10-09 20:17:35,026 | INFO     | . Timing measurements:
[2025-10-09 16:18:48] 2025-10-09 20:17:35,026 | INFO     | . get job = 1 s
[2025-10-09 16:18:48] 2025-10-09 20:17:35,026 | INFO     | . initial setup = 5 s
[2025-10-09 16:18:48] 2025-10-09 20:17:35,026 | INFO     | . payload setup = 69 s
[2025-10-09 16:18:48] 2025-10-09 20:17:35,026 | INFO     | . stage-in = 1 s
[2025-10-09 16:18:48] 2025-10-09 20:17:35,026 | INFO     | . payload execution = 58218 s
[2025-10-09 16:18:48] 2025-10-09 20:17:35,026 | INFO     | . stage-out = 10 s
[2025-10-09 16:18:48] 2025-10-09 20:17:35,027 | INFO     | . log creation = 1 s
[2025-10-09 16:18:48] 2025-10-09 20:17:35,027 | INFO     | ..............................
[2025-10-09 16:18:48] 2025-10-09 20:17:35,128 | INFO     | time since job start (58491s) is within the limit (172800.0s)
[2025-10-09 16:18:48] 2025-10-09 20:17:35,584 | INFO     | 
[2025-10-09 16:18:48] 2025-10-09 20:17:35,585 | INFO     | job summary report
[2025-10-09 16:18:48] 2025-10-09 20:17:35,585 | INFO     | --------------------------------------------------
[2025-10-09 16:18:48] 2025-10-09 20:17:35,585 | INFO     | PanDA job id: 6836603461
[2025-10-09 16:18:48] 2025-10-09 20:17:35,585 | INFO     | task id: 46676269
[2025-10-09 16:18:48] 2025-10-09 20:17:35,585 | INFO     | errors: (none)
[2025-10-09 16:18:48] 2025-10-09 20:17:35,586 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-09 16:18:48] 2025-10-09 20:17:35,586 | INFO     | pilot state: finished 
[2025-10-09 16:18:48] 2025-10-09 20:17:35,586 | INFO     | transexitcode: 0
[2025-10-09 16:18:48] 2025-10-09 20:17:35,586 | INFO     | exeerrorcode: 0
[2025-10-09 16:18:48] 2025-10-09 20:17:35,586 | INFO     | exeerrordiag: 
[2025-10-09 16:18:48] 2025-10-09 20:17:35,586 | INFO     | exitcode: 0
[2025-10-09 16:18:48] 2025-10-09 20:17:35,586 | INFO     | exitmsg: OK
[2025-10-09 16:18:48] 2025-10-09 20:17:35,586 | INFO     | cpuconsumptiontime: 78318 s
[2025-10-09 16:18:48] 2025-10-09 20:17:35,587 | INFO     | nevents: 400
[2025-10-09 16:18:48] 2025-10-09 20:17:35,587 | INFO     | neventsw: 0
[2025-10-09 16:18:48] 2025-10-09 20:17:35,587 | INFO     | pid: 3389506
[2025-10-09 16:18:48] 2025-10-09 20:17:35,587 | INFO     | pgrp: 3389506
[2025-10-09 16:18:48] 2025-10-09 20:17:35,587 | INFO     | corecount: 9
[2025-10-09 16:18:48] 2025-10-09 20:17:35,587 | INFO     | event service: False
[2025-10-09 16:18:48] 2025-10-09 20:17:35,587 | INFO     | sizes: {0: 2348023, 2: 2348624, 3: 2348708, 4: 2348736, 5: 2348991, 6: 2348991, 18: 2349147, 30: 2349175, 41: 2349203, 53: 2349231, 62: 2349521, 66: 2349829, 58295
[2025-10-09 16:18:48] 2025-10-09 20:17:35,588 | INFO     | --------------------------------------------------
[2025-10-09 16:18:48] 2025-10-09 20:17:35,588 | INFO     | 
[2025-10-09 16:18:48] 2025-10-09 20:17:35,588 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-10-09 16:18:48] 2025-10-09 20:17:35,660 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-09 16:18:48] 2025-10-09 20:17:35,660 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-09 16:18:48] 2025-10-09 20:17:35,660 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-09 16:18:48] 2025-10-09 20:17:35,660 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-09 16:18:48] 2025-10-09 20:17:35,661 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-09 16:18:48] 2025-10-09 20:17:35,661 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-09 16:18:48] 2025-10-09 20:17:35,661 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-09 16:18:48] 2025-10-09 20:17:35,661 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-09 16:18:48] 2025-10-09 20:17:35,661 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-09 16:18:48] 2025-10-09 20:17:35,661 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-09 16:18:48] 2025-10-09 20:17:35,662 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-09 16:18:48] 2025-10-09 20:17:35,662 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-09 16:18:48] 2025-10-09 20:17:35,662 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-09 16:18:48] 2025-10-09 20:17:35,662 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-09 16:18:48] 2025-10-09 20:17:35,662 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-09 16:18:48] 2025-10-09 20:17:35,662 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-09 16:18:48] 2025-10-09 20:17:35,663 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-09 16:18:48] 2025-10-09 20:17:35,663 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-09 16:18:48] 2025-10-09 20:17:35,663 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-09 16:18:48] 2025-10-09 20:17:35,678 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-09 16:18:48] 2025-10-09 20:17:35,678 | INFO     | job 6836603461 has completed (purged errors)
[2025-10-09 16:18:48] 2025-10-09 20:17:35,679 | INFO     | overall cleanup function is called
[2025-10-09 16:18:48] 2025-10-09 20:17:36,692 | INFO     | --- collectZombieJob: --- 10, [3389506]
[2025-10-09 16:18:48] 2025-10-09 20:17:36,693 | INFO     | zombie collector waiting for pid 3389506
[2025-10-09 16:18:48] 2025-10-09 20:17:36,693 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-09 16:18:48] 2025-10-09 20:17:36,693 | INFO     | collected zombie processes
[2025-10-09 16:18:48] 2025-10-09 20:17:36,693 | INFO     | will attempt to kill all subprocesses of pid=3389506
[2025-10-09 16:18:48] 2025-10-09 20:17:43,650 | INFO     | PID=3373047 has CPU usage=6.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-09 16:18:48] 2025-10-09 20:17:43,650 | INFO     | .. there are 36 such processes running
[2025-10-09 16:18:48] 2025-10-09 20:17:43,690 | INFO     | process IDs to be killed: [3389506] (in reverse order)
[2025-10-09 16:18:48] 2025-10-09 20:17:44,017 [wrapper] supervise_pilot (15 min periods counter: 66)
[2025-10-09 16:18:48] 2025-10-09 20:17:45,571 | WARNING  | found no corresponding commands to process id(s)
[2025-10-09 16:18:48] 2025-10-09 20:17:45,571 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-09 16:18:48] 2025-10-09 20:17:45,786 | INFO     | did not find any defunct processes belonging to 3389506
[2025-10-09 16:18:48] 2025-10-09 20:17:45,947 | INFO     | did not find any defunct processes belonging to 3389506
[2025-10-09 16:18:48] 2025-10-09 20:17:45,947 | INFO     | ready for new job
[2025-10-09 16:18:48] 2025-10-09 20:17:45,947 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-09 16:18:48] 2025-10-09 20:17:45,993 | INFO     | ***************************************
[2025-10-09 16:18:48] 2025-10-09 20:17:45,993 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-09 16:18:48] 2025-10-09 20:17:45,993 | INFO     | ***************************************
[2025-10-09 16:18:48] 2025-10-09 20:17:45,993 | INFO     | 
[2025-10-09 16:18:48] 2025-10-09 20:17:45,995 | INFO     | architecture information:
[2025-10-09 16:18:48] 2025-10-09 20:17:46,043 | INFO     | executing command: cat /etc/os-release
[2025-10-09 16:18:48] 2025-10-09 20:17:46,169 | INFO     | cat /etc/os-release:
[2025-10-09 16:18:48] NAME="CentOS Linux"
[2025-10-09 16:18:48] VERSION="7 (Core)"
[2025-10-09 16:18:48] ID="centos"
[2025-10-09 16:18:48] ID_LIKE="rhel fedora"
[2025-10-09 16:18:48] VERSION_ID="7"
[2025-10-09 16:18:48] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-09 16:18:48] ANSI_COLOR="0;31"
[2025-10-09 16:18:48] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-09 16:18:48] HOME_URL="https://www.centos.org/"
[2025-10-09 16:18:48] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-09 16:18:48] 
[2025-10-09 16:18:48] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-09 16:18:48] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-09 16:18:48] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-09 16:18:48] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-09 16:18:48] 
[2025-10-09 16:18:48] 2025-10-09 20:17:46,170 | INFO     | ***************************************
[2025-10-09 16:18:48] 2025-10-09 20:17:46,673 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-10-09 16:18:48] 2025-10-09 20:17:46,753 | INFO     | sufficient remaining disk space (53363081216 B)
[2025-10-09 16:18:48] 2025-10-09 20:17:46,753 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-09 16:18:48] 2025-10-09 20:17:46,753 | INFO     | current server update state: UPDATING_FINAL
[2025-10-09 16:18:48] 2025-10-09 20:17:46,754 | INFO     | update_server=False
[2025-10-09 16:18:48] 2025-10-09 20:17:46,754 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-09 16:18:48] 2025-10-09 20:17:47,014 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-10-09 16:18:48] 2025-10-09 20:17:47,015 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-10-09 16:18:48] 2025-10-09 20:17:47,015 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-09 16:18:48] 2025-10-09 20:17:47,015 | INFO     | will abort loop
[2025-10-09 16:18:48] 2025-10-09 20:17:47,263 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-09 16:18:48] 2025-10-09 20:17:47,464 | INFO     | all payload control threads have been joined
[2025-10-09 16:18:48] 2025-10-09 20:17:47,689 | INFO     | all job control threads have been joined
[2025-10-09 16:18:48] 2025-10-09 20:17:47,759 | INFO     | [job] retrieve thread has finished
[2025-10-09 16:18:48] 2025-10-09 20:17:47,801 | INFO     | all data control threads have been joined
[2025-10-09 16:18:48] 2025-10-09 20:17:47,974 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-09 16:18:48] 2025-10-09 20:17:48,021 | INFO     | [job] job monitor thread has finished
[2025-10-09 16:18:48] 2025-10-09 20:17:48,299 | INFO     | [payload] validate_pre thread has finished
[2025-10-09 16:18:48] 2025-10-09 20:17:48,300 | INFO     | [payload] execute_payloads thread has finished
[2025-10-09 16:18:48] 2025-10-09 20:17:48,301 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-09 16:18:48] 2025-10-09 20:17:48,313 | INFO     | [job] validate thread has finished
[2025-10-09 16:18:48] 2025-10-09 20:17:48,314 | INFO     | [job] create_data_payload thread has finished
[2025-10-09 16:18:48] 2025-10-09 20:17:48,321 | INFO     | [data] copytool_in thread has finished
[2025-10-09 16:18:48] 2025-10-09 20:17:48,443 | INFO     | [payload] failed_post thread has finished
[2025-10-09 16:18:48] 2025-10-09 20:17:48,470 | INFO     | [payload] control thread has finished
[2025-10-09 16:18:48] 2025-10-09 20:17:48,712 | INFO     | [job] control thread has finished
[2025-10-09 16:18:48] 2025-10-09 20:17:48,807 | INFO     | [data] control thread has finished
[2025-10-09 16:18:48] 2025-10-09 20:17:49,032 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-09 16:18:48] 2025-10-09 20:17:49,178 | INFO     | [payload] validate_post thread has finished
[2025-10-09 16:18:48] 2025-10-09 20:17:49,301 | INFO     | [data] copytool_out thread has finished
[2025-10-09 16:18:48] 2025-10-09 20:17:50,051 | INFO     | [job] queue monitor thread has finished
[2025-10-09 16:18:48] 2025-10-09 20:17:52,020 | INFO     | [data] queue_monitor thread has finished
[2025-10-09 16:18:48] 2025-10-09 20:18:18,945 | INFO     | PID=3373047 has CPU usage=2.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-09 16:18:48] 2025-10-09 20:18:18,946 | INFO     | .. there are 36 such processes running
[2025-10-09 16:18:48] 2025-10-09 20:18:18,946 | INFO     | found 0 job(s) in 20 queues
[2025-10-09 16:18:48] 2025-10-09 20:18:18,946 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-09 16:18:48] 2025-10-09 20:18:18,947 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-09 16:18:48] 2025-10-09 20:18:36,861 | INFO     | [monitor] cgroup control has ended
[2025-10-09 16:18:48] 2025-10-09 20:18:38,267 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140424641517376)>', '<ExcThread(monitor, started 140423972493056)>']
[2025-10-09 16:18:48] 2025-10-09 20:18:39,161 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-09 16:18:48] 2025-10-09 20:18:39,162 | INFO     | [monitor] control thread has ended
[2025-10-09 16:18:48] 2025-10-09 20:18:43,304 | INFO     | all workflow threads have been joined
[2025-10-09 16:18:48] 2025-10-09 20:18:43,313 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-09 16:18:48] 2025-10-09 20:18:43,313 | INFO     | traces error code: 0
[2025-10-09 16:18:48] 2025-10-09 20:18:43,314 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-09 16:18:48] 2025-10-09 20:18:45,667 [wrapper] ==== pilot stdout END ====
[2025-10-09 16:18:48] 2025-10-09 20:18:45,716 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-09 16:18:48] 2025-10-09 20:18:45,762 [wrapper] pilotpid: 3373047
[2025-10-09 16:18:48] 2025-10-09 20:18:45,785 [wrapper] Pilot exit status: 0
[2025-10-09 16:18:48] 2025-10-09 20:18:45,905 [wrapper] pandaids: 6836603461
[2025-10-09 16:18:48] 2025-10-09 20:18:46,990 [wrapper] cleanup supervisor_pilot 3018042 3373048
[2025-10-09 16:18:48] 2025-10-09 20:18:47,039 [wrapper] Test setup, not cleaning
[2025-10-09 16:18:48] 2025-10-09 20:18:47,052 [wrapper] apfmon messages muted
[2025-10-09 16:18:48] 2025-10-09 20:18:47,149 [wrapper] ==== wrapper stdout END ====
[2025-10-09 16:18:48] 2025-10-09 20:18:47,197 [wrapper] ==== wrapper stderr END ====
[2025-10-09 16:18:48]  *** Error codes and diagnostics ***
[2025-10-09 16:18:48]     "exeErrorCode": 0,
[2025-10-09 16:18:48]     "exeErrorDiag": "",
[2025-10-09 16:18:48]     "pilotErrorCode": 0,
[2025-10-09 16:18:48]     "pilotErrorDiag": "",
[2025-10-09 16:18:48]  *** Listing of results directory ***
[2025-10-09 16:18:48] total 426632
[2025-10-09 16:18:48] -rw-r--r--. 1 boincer umatlas    557409 Oct  8 18:57 pilot3.tar.gz
[2025-10-09 16:18:48] -rwx------. 1 boincer umatlas     36292 Oct  8 19:04 runpilot2-wrapper.sh
[2025-10-09 16:18:48] -rw-r--r--. 1 boincer umatlas      5112 Oct  8 19:05 queuedata.json
[2025-10-09 16:18:48] -rw-r--r--. 1 boincer umatlas       100 Oct  9 00:00 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-09 16:18:48] -rwxr-xr-x. 1 boincer umatlas      7986 Oct  9 00:00 run_atlas
[2025-10-09 16:18:48] -rw-r--r--. 1 boincer umatlas       105 Oct  9 00:00 job.xml
[2025-10-09 16:18:48] -rw-r--r--. 2 boincer umatlas 222745968 Oct  9 00:00 EVNT.46676267._000392.pool.root.1
[2025-10-09 16:18:48] -rw-r--r--. 2 boincer umatlas     15120 Oct  9 00:00 start_atlas.sh
[2025-10-09 16:18:48] drwxrwx--x. 2 boincer umatlas      4096 Oct  9 00:00 shared
[2025-10-09 16:18:48] -rw-r--r--. 2 boincer umatlas    569680 Oct  9 00:00 input.tar.gz
[2025-10-09 16:18:48] -rw-r--r--. 1 boincer umatlas         0 Oct  9 00:00 boinc_lockfile
[2025-10-09 16:18:48] -rw-r--r--. 1 boincer umatlas      2547 Oct  9 00:00 pandaJob.out
[2025-10-09 16:18:48] -rw-------. 1 boincer umatlas    979306 Oct  9 00:02 agis_schedconf.cvmfs.json
[2025-10-09 16:18:48] drwx------. 5 boincer umatlas      4096 Oct  9 00:02 pilot3
[2025-10-09 16:18:48] -rw-r--r--. 1 boincer umatlas      6524 Oct  9 16:11 init_data.xml
[2025-10-09 16:18:48] -rw-------. 1 boincer umatlas 196211435 Oct  9 16:14 HITS.46676269._009699.pool.root.1
[2025-10-09 16:18:48] -rw-r--r--. 1 boincer umatlas       531 Oct  9 16:14 boinc_task_state.xml
[2025-10-09 16:18:48] -rw-------. 1 boincer umatlas      1042 Oct  9 16:16 memory_monitor_summary.json
[2025-10-09 16:18:48] -rw-------. 1 boincer umatlas   1560401 Oct  9 16:16 agis_ddmendpoints.agis.ALL.json
[2025-10-09 16:18:48] -rw-------. 1 boincer umatlas    940908 Oct  9 16:16 log.46676269._009699.job.log.tgz.1
[2025-10-09 16:18:48] -rw-------. 1 boincer umatlas        95 Oct  9 16:17 pilot_heartbeat.json
[2025-10-09 16:18:48] -rw-------. 1 boincer umatlas      7820 Oct  9 16:17 heartbeat.json
[2025-10-09 16:18:48] -rw-r--r--. 1 boincer umatlas        28 Oct  9 16:18 wrapper_checkpoint.txt
[2025-10-09 16:18:48] -rw-r--r--. 1 boincer umatlas      8192 Oct  9 16:18 boinc_mmap_file
[2025-10-09 16:18:48] -rw-------. 1 boincer umatlas      5010 Oct  9 16:18 pilotlog.txt
[2025-10-09 16:18:48] -rw-------. 1 boincer umatlas   6065824 Oct  9 16:18 log.46676269._009699.job.log.1
[2025-10-09 16:18:48] -rw-------. 1 boincer umatlas       357 Oct  9 16:18 output.list
[2025-10-09 16:18:48] -rw-r--r--. 1 boincer umatlas       620 Oct  9 16:18 runtime_log
[2025-10-09 16:18:48] -rw-------. 1 boincer umatlas   7024640 Oct  9 16:18 result.tar.gz
[2025-10-09 16:18:48] -rw-r--r--. 1 boincer umatlas      8704 Oct  9 16:18 runtime_log.err
[2025-10-09 16:18:48] -rw-------. 1 boincer umatlas       658 Oct  9 16:18 ndDNDmWOsQ8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmRdYNDmQI2Kon.diag
[2025-10-09 16:18:48] -rw-r--r--. 1 boincer umatlas     21256 Oct  9 16:18 stderr.txt
[2025-10-09 16:18:48] HITS file was successfully produced:
[2025-10-09 16:18:48] -rw-------. 1 boincer umatlas 196211435 Oct  9 16:14 shared/HITS.pool.root.1
[2025-10-09 16:18:48]  *** Contents of shared directory: ***
[2025-10-09 16:18:48] total 416584
[2025-10-09 16:18:48] -rw-r--r--. 2 boincer umatlas 222745968 Oct  9 00:00 ATLAS.root_0
[2025-10-09 16:18:48] -rw-r--r--. 2 boincer umatlas     15120 Oct  9 00:00 start_atlas.sh
[2025-10-09 16:18:48] -rw-r--r--. 2 boincer umatlas    569680 Oct  9 00:00 input.tar.gz
[2025-10-09 16:18:48] -rw-------. 1 boincer umatlas 196211435 Oct  9 16:14 HITS.pool.root.1
[2025-10-09 16:18:48] -rw-------. 1 boincer umatlas   7024640 Oct  9 16:18 result.tar.gz
16:18:49 (3362389): run_atlas exited; CPU time 81067.357900
16:18:49 (3362389): called boinc_finish(0)

</stderr_txt>
]]>

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