Stderr output

<core_client_version>7.16.20</core_client_version>
<![CDATA[
<stderr_txt>
2025-10-09 09:15:15 (62512): vboxwrapper version 26210
2025-10-09 09:15:15 (62512): BOINC client version: 7.16.20
2025-10-09 09:15:16 (62512): Detected: VirtualBox VboxManage Interface (Version: 6.0.14)
2025-10-09 09:15:18 (62512): Successfully copied 'init_data.xml' to the shared directory.
2025-10-09 09:15:20 (62512): Create VM. (boinc_052a50eaa6d768f7, slot#7)
2025-10-09 09:15:25 (62512): Setting Memory Size for VM. (4800MB)
2025-10-09 09:15:25 (62512): Setting CPU Count for VM. (8)
2025-10-09 09:15:26 (62512): Setting Chipset Options for VM.
2025-10-09 09:15:27 (62512): Setting Graphics Controller Options for VM. (Driver: VBoxVGA, 16MB)
2025-10-09 09:15:27 (62512): Setting Boot Options for VM.
2025-10-09 09:15:28 (62512): Setting Network Configuration for NAT. (Driver: virtio)
2025-10-09 09:15:28 (62512): Enabling VM Network Access.
2025-10-09 09:15:28 (62512): Disabling USB Support for VM.
2025-10-09 09:15:29 (62512): Disabling COM Port Support for VM.
2025-10-09 09:15:29 (62512): Disabling LPT Port Support for VM.
2025-10-09 09:15:29 (62512): Disabling Audio Support for VM.
2025-10-09 09:15:30 (62512): Disabling Clipboard Support for VM.
2025-10-09 09:15:30 (62512): Disabling Drag and Drop Support for VM.
2025-10-09 09:15:30 (62512): Adding storage controller(s) to VM.
2025-10-09 09:15:30 (62512): Adding virtual disk drive to VM. (ATLAS_vbox_3.03_image.vdi)
2025-10-09 09:15:31 (62512): Adding VirtualBox Guest Additions to VM.
2025-10-09 09:15:32 (62512): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-10-09 09:15:32 (62512): forwarding host port 57754 to guest port 80
2025-10-09 09:15:32 (62512): Enabling remote desktop for VM.
2025-10-09 09:15:32 (62512): Required extension pack not installed, remote desktop not enabled.
2025-10-09 09:15:32 (62512): Enabling shared directory for VM.
2025-10-09 09:15:33 (62512): Starting VM using VBoxManage interface. (boinc_052a50eaa6d768f7, slot#7)
2025-10-09 09:15:37 (62512): Successfully started VM. (PID = '9224')
2025-10-09 09:15:37 (62512): Reporting VM Process ID to BOINC.
2025-10-09 09:15:37 (62512): Guest Log: BIOS: VirtualBox 6.0.14
2025-10-09 09:15:37 (62512): Guest Log: CPUID EDX: 0x178bfbff
2025-10-09 09:15:37 (62512): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-10-09 09:15:37 (62512): VM state change detected. (old = 'poweredoff', new = 'running')
2025-10-09 09:15:37 (62512): Detected: Web Application Enabled (http://localhost:57754)
2025-10-09 09:15:37 (62512): Preference change detected
2025-10-09 09:15:37 (62512): Setting CPU throttle for VM. (100%)
2025-10-09 09:15:37 (62512): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-10-09 09:15:39 (62512): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-10-09 09:15:39 (62512): Guest Log: BIOS: Booting from Hard Disk...
2025-10-09 09:15:43 (62512): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-10-09 09:15:43 (62512): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-10-09 09:15:43 (62512): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-10-09 09:15:43 (62512): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-10-09 09:15:43 (62512): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-10-09 09:15:43 (62512): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-10-09 09:15:43 (62512): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-10-09 09:15:43 (62512): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-10-09 09:15:43 (62512): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-10-09 09:15:43 (62512): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-10-09 09:15:43 (62512): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-10-09 09:15:43 (62512): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-10-09 09:15:43 (62512): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-10-09 09:15:43 (62512): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-10-09 09:15:43 (62512): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-10-09 09:15:43 (62512): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-10-09 09:15:43 (62512): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-10-09 09:15:43 (62512): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-10-09 09:15:43 (62512): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-10-09 09:15:43 (62512): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-10-09 09:15:43 (62512): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-10-09 09:15:43 (62512): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-10-09 09:15:43 (62512): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-10-09 09:15:43 (62512): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-10-09 09:15:43 (62512): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-10-09 09:15:43 (62512): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-10-09 09:15:43 (62512): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-10-09 09:15:43 (62512): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-10-09 09:15:43 (62512): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-10-09 09:15:43 (62512): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-10-09 09:15:43 (62512): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-10-09 09:15:43 (62512): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-10-09 09:15:51 (62512): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-10-09 09:15:51 (62512): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0000000 (size 0x400000)
2025-10-09 09:16:01 (62512): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-10-09 09:16:01 (62512): Guest Log: 00:00:00.000218 main     Log opened 2025-10-09T09:15:59.034550000Z
2025-10-09 09:16:01 (62512): Guest Log: 00:00:00.000329 main     OS Product: Linux
2025-10-09 09:16:01 (62512): Guest Log: 00:00:00.000396 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-10-09 09:16:01 (62512): Guest Log: 00:00:00.000485 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-10-09 09:16:01 (62512): Guest Log: 00:00:00.000533 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-10-09 09:16:01 (62512): Guest Log: 00:00:00.000534 main     Process ID: 1374
2025-10-09 09:16:01 (62512): Guest Log: 00:00:00.000535 main     Package type: LINUX_64BITS_GENERIC
2025-10-09 09:16:01 (62512): Guest Log: 00:00:00.001686 main     5.2.32 r132073 started. Verbose level = 0
2025-10-09 09:16:01 (62512): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-10-09 09:16:01 (62512): Guest Log: [INFO] Mounting shared directory
2025-10-09 09:16:01 (62512): Guest Log: [INFO] Checking for init_data.xml
2025-10-09 09:16:06 (62512): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-10-09 09:16:06 (62512): Guest Log: [INFO] Detected branch: prod
2025-10-09 09:16:06 (62512): Guest Log: This is the prod version of the ATLAS job wrapper
2025-10-09 09:16:06 (62512): Guest Log: Copying input files
2025-10-09 09:16:08 (62512): Guest Log: Copied input files into RunAtlas.
2025-10-09 09:16:08 (62512): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-10-09 09:16:08 (62512): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-10-09 09:16:08 (62512): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-10-09 09:16:08 (62512): Guest Log: Further information can be found at the LHC@home message board.
2025-10-09 09:16:11 (62512): Guest Log: 00:00:10.044477 timesync vgsvcTimeSyncWorker: Radical guest time change: -7 188 060 969 000ns (GuestNow=1 759 994 170 976 894 000 ns GuestLast=1 760 001 359 037 863 000 ns fSetTimeLastLoop=true )
2025-10-09 09:16:40 (62512): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-10-09 09:16:41 (62512): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-10-09 09:16:41 (62512): Guest Log: 2.6.3.0 1669 0 32176 151500 4 1 3117639 4096000 0 65024 0 0 n/a 0 0 http://s1ral-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2025-10-09 09:16:42 (62512): Guest Log: copied the webapp to /var/www
2025-10-09 09:16:42 (62512): Guest Log: ATHENA_PROC_NUMBER=8
2025-10-09 09:16:42 (62512): Guest Log: ATHENA_CORE_NUMBER=8
2025-10-09 09:16:42 (62512): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-10-09 09:16:42 (62512): Guest Log:  *** Starting ATLAS job. (PandaID=6836602377 taskID=46676269) ***
2025-10-09 10:56:01 (62512): Status Report: Elapsed Time: '6000.082411'
2025-10-09 10:56:01 (62512): Status Report: CPU Time: '36022.828125'
2025-10-09 12:36:43 (62512): Status Report: Elapsed Time: '12000.082411'
2025-10-09 12:36:43 (62512): Status Report: CPU Time: '76918.171875'
2025-10-09 13:56:28 (62512): Guest Log:  *** Job finished ***
2025-10-09 13:56:28 (62512): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-10-09 13:56:28 (62512): Guest Log: 2025-10-09 11:56:18,859 | INFO     | all workflow threads have been joined
2025-10-09 13:56:28 (62512): Guest Log: 2025-10-09 11:56:18,860 | INFO     | end of generic workflow (traces error code: 0)
2025-10-09 13:56:28 (62512): Guest Log: 2025-10-09 11:56:18,860 | INFO     | traces error code: 0
2025-10-09 13:56:28 (62512): Guest Log: 2025-10-09 11:56:18,860 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-10-09 13:56:28 (62512): Guest Log: 2025-10-09 11:56:27,068 | INFO     | PID=6098 has CPU usage=1.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -j managed --pilot-user ATLAS --harvester-submit-mode PUSH -w generic --job-type managed --resource-type MCORE -z -t
2025-10-09 13:56:28 (62512): Guest Log: 2025-10-09 11:56:27,070 | INFO     | found 0 job(s) in 20 queues
2025-10-09 13:56:28 (62512): Guest Log: 2025-10-09 11:56:27,070 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
2025-10-09 13:56:28 (62512): Guest Log: 2025-10-09 11:56:27,070 | WARNING  | will wait for a maximum of 300 s for threads to finish
2025-10-09 13:56:28 (62512): Guest Log: 2025-10-09 11:56:27,070 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-10-09 13:56:28 (62512): Guest Log: 2025-10-09 11:56:27,070 | INFO     | [monitor] control thread has ended
2025-10-09 13:56:28 (62512): Guest Log: 2025-10-09 11:56:27,193 [wrapper] ==== pilot stdout END ====
2025-10-09 13:56:28 (62512): Guest Log: 2025-10-09 11:56:27,201 [wrapper] ==== wrapper stdout RESUME ====
2025-10-09 13:56:28 (62512): Guest Log: 2025-10-09 11:56:27,209 [wrapper] pilotpid: 6098
2025-10-09 13:56:28 (62512): Guest Log: 2025-10-09 11:56:27,217 [wrapper] Pilot exit status: 0
2025-10-09 13:56:28 (62512): Guest Log: 2025-10-09 11:56:27,312 [wrapper] pandaids: 6836602377
2025-10-09 13:56:28 (62512): Guest Log: 2025-10-09 11:56:27,377 [wrapper] cleanup supervisor_pilot 16172 6099
2025-10-09 13:56:28 (62512): Guest Log: 2025-10-09 11:56:27,385 [wrapper] Test setup, not cleaning
2025-10-09 13:56:28 (62512): Guest Log: 2025-10-09 11:56:27,393 [wrapper] apfmon messages muted
2025-10-09 13:56:28 (62512): Guest Log: 2025-10-09 11:56:27,401 [wrapper] ==== wrapper stdout END ====
2025-10-09 13:56:28 (62512): Guest Log: 2025-10-09 11:56:27,409 [wrapper] ==== wrapper stderr END ====
2025-10-09 13:56:28 (62512): Guest Log:  *** Error codes and diagnostics ***
2025-10-09 13:56:28 (62512): Guest Log:     "exeErrorCode": 0,
2025-10-09 13:56:28 (62512): Guest Log:     "exeErrorDiag": "",
2025-10-09 13:56:28 (62512): Guest Log:     "pilotErrorCode": 0,
2025-10-09 13:56:28 (62512): Guest Log:     "pilotErrorDiag": "",
2025-10-09 13:56:28 (62512): Guest Log:  *** Listing of results directory ***
2025-10-09 13:56:28 (62512): Guest Log: total 204656
2025-10-09 13:56:28 (62512): Guest Log: -rw-r--r--. 1 atlas atlas    557409 Oct  8 22:57 pilot3.tar.gz
2025-10-09 13:56:28 (62512): Guest Log: -rw-r--r--. 1 atlas atlas      5112 Oct  8 23:01 queuedata.json
2025-10-09 13:56:28 (62512): Guest Log: -rwx------. 1 atlas atlas     36292 Oct  8 23:01 runpilot2-wrapper.sh
2025-10-09 13:56:28 (62512): Guest Log: -rwxr-xr-x. 1 atlas atlas      8774 Oct  9 07:16 init_data.xml
2025-10-09 13:56:28 (62512): Guest Log: -rwxr-xr-x. 1 atlas atlas    569678 Oct  9 07:16 input.tar.gz
2025-10-09 13:56:28 (62512): Guest Log: -rwxr-xr-x. 1 atlas atlas     15120 Oct  9 07:16 start_atlas.sh
2025-10-09 13:56:28 (62512): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Oct  9 07:16 EVNT.46676267._000361.pool.root.1 -> /data/./ATLAS.root_0
2025-10-09 13:56:28 (62512): Guest Log: -rw-r--r--. 1 atlas atlas      2548 Oct  9 07:16 pandaJob.out
2025-10-09 13:56:28 (62512): Guest Log: -rw-------. 1 atlas atlas    979298 Oct  9 07:17 agis_schedconf.cvmfs.json
2025-10-09 13:56:28 (62512): Guest Log: drwx------. 5 atlas atlas      4096 Oct  9 07:17 pilot3
2025-10-09 13:56:28 (62512): Guest Log: -rw-------. 1 atlas atlas 200469071 Oct  9 11:54 HITS.46676269._009012.pool.root.1
2025-10-09 13:56:28 (62512): Guest Log: -rw-------. 1 atlas atlas      1048 Oct  9 11:55 memory_monitor_summary.json
2025-10-09 13:56:28 (62512): Guest Log: -rw-------. 1 atlas atlas   1560401 Oct  9 11:55 agis_ddmendpoints.agis.ALL.json
2025-10-09 13:56:28 (62512): Guest Log: -rw-------. 1 atlas atlas    494499 Oct  9 11:55 log.46676269._009012.job.log.tgz.1
2025-10-09 13:56:28 (62512): Guest Log: -rw-------. 1 atlas atlas      7837 Oct  9 11:55 heartbeat.json
2025-10-09 13:56:28 (62512): Guest Log: -rw-------. 1 atlas atlas       744 Oct  9 11:56 pilotlog.txt
2025-10-09 13:56:28 (62512): Guest Log: -rw-------. 1 atlas atlas        95 Oct  9 11:56 pilot_heartbeat.json
2025-10-09 13:56:28 (62512): Guest Log: -rw-------. 1 atlas atlas   2140214 Oct  9 11:56 log.46676269._009012.job.log.1
2025-10-09 13:56:29 (62512): Guest Log: -rw-------. 1 atlas atlas       357 Oct  9 11:56 output.list
2025-10-09 13:56:29 (62512): Guest Log: -rw-r--r--. 1 atlas atlas       620 Oct  9 11:56 runtime_log
2025-10-09 13:56:29 (62512): Guest Log: -rw-------. 1 atlas atlas   2652160 Oct  9 11:56 result.tar.gz
2025-10-09 13:56:29 (62512): Guest Log: -rw-------. 1 atlas atlas       662 Oct  9 11:56 TkAMDmcLsQ8n9Rq4apOajLDm4fhM0noT9bVof3QYDm20MMDmHZTZ4m.diag
2025-10-09 13:56:29 (62512): Guest Log: -rw-r--r--. 1 atlas atlas      8646 Oct  9 11:56 runtime_log.err
2025-10-09 13:56:29 (62512): Guest Log: Looking for outputfile HITS.46676269._009012.pool.root.1
2025-10-09 13:56:29 (62512): Guest Log: HITS file was successfully produced
2025-10-09 13:56:29 (62512): Guest Log: -rw-------. 1 atlas atlas 200469071 Oct  9 11:54 /home/atlas/RunAtlas/HITS.46676269._009012.pool.root.1
2025-10-09 13:56:30 (62512): Guest Log: Successfully finished the ATLAS job!
2025-10-09 13:56:30 (62512): Guest Log: Copying the results back to the shared directory!
2025-10-09 13:56:30 (62512): Guest Log:  *** Contents of shared directory: ***
2025-10-09 13:56:30 (62512): Guest Log: total 417748
2025-10-09 13:56:30 (62512): Guest Log: -rwxrwxrwx. 1 root root 224044104 Oct  9 07:15 ATLAS.root_0
2025-10-09 13:56:30 (62512): Guest Log: -rwxrwxrwx. 1 root root 200469071 Oct  9 11:56 HITS.pool.root.1
2025-10-09 13:56:30 (62512): Guest Log: -rwxrwxrwx. 1 root root      8774 Oct  9 07:15 init_data.xml
2025-10-09 13:56:30 (62512): Guest Log: -rwxrwxrwx. 1 root root    569678 Oct  8 23:18 input.tar.gz
2025-10-09 13:56:30 (62512): Guest Log: -rwxrwxrwx. 1 root root   2652160 Oct  9 11:56 result.tar.gz
2025-10-09 13:56:30 (62512): Guest Log: -rwxrwxrwx. 1 root root     15120 Oct  8 23:18 start_atlas.sh
2025-10-09 13:56:30 (62512): Guest Log:  *** Success! Shutting down the machine. ***
2025-10-09 13:56:30 (62512): VM Completion File Detected.
2025-10-09 13:56:30 (62512): Powering off VM.
2025-10-09 13:56:32 (62512): Successfully stopped VM.
2025-10-09 13:56:32 (62512): Deregistering VM. (boinc_052a50eaa6d768f7, slot#7)
2025-10-09 13:56:32 (62512): Removing network bandwidth throttle group from VM.
2025-10-09 13:56:32 (62512): Removing VM from VirtualBox.
2025-10-09 13:56:37 (62512): called boinc_finish(0)

</stderr_txt>
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