Stderr output

<core_client_version>8.2.4</core_client_version>
<![CDATA[
<stderr_txt>
01:39:49 (163374): wrapper (7.7.26015): starting
01:39:49 (163374): wrapper: running run_atlas (--nthreads 12)
[2025-10-09 01:39:49] Arguments: --nthreads 12
[2025-10-09 01:39:49] Threads: 12
[2025-10-09 01:39:49] Checking for CVMFS
[2025-10-09 01:39:49] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-09 01:39:49] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-09 01:39:49] Running cvmfs_config stat atlas.cern.ch
[2025-10-09 01:39:50] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-09 01:39:50] 2.13.2.0 137079 33 45148 151489 2 57 2256175 4096001 0 130560 0 61514 99.971 4130 350 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
[2025-10-09 01:39:50] CVMFS is ok
[2025-10-09 01:39:50] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-09 01:39:50] Small home clusters do not require a local http proxy but it is suggested if
[2025-10-09 01:39:50] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2025-10-09 01:39:50] Further information can be found at the LHC@home message board.
[2025-10-09 01:39:50] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-09 01:39:50] Checking for apptainer binary...
[2025-10-09 01:39:50] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-09 01:39:50] Running /usr/bin/apptainer --version
[2025-10-09 01:39:50] apptainer version 1.4.2
[2025-10-09 01:39:50] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-09 01:39:50] matisse
[2025-10-09 01:39:50] apptainer works
[2025-10-09 01:39:50] Set ATHENA_PROC_NUMBER=12
[2025-10-09 01:39:50] Set ATHENA_CORE_NUMBER=12
[2025-10-09 01:39:50] Starting ATLAS job with PandaID=6836599912
[2025-10-09 01:39:50] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc-client/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-09 02:11:25]  *** The last 200 lines of the pilot log: ***
[2025-10-09 02:11:25]  mtime=0
[2025-10-09 02:11:25]  protocol_id=None
[2025-10-09 02:11:25]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-10-09 02:11:25]  replicas=None
[2025-10-09 02:11:25]  scope=mc23_13p6TeV
[2025-10-09 02:11:25]  status=None
[2025-10-09 02:11:25]  status_code=0
[2025-10-09 02:11:25]  storage_token=
[2025-10-09 02:11:25]  surl=/var/lib/boinc-client/slots/0/PanDA_Pilot-6836599912/log.46676269._008443.job.log.tgz.1
[2025-10-09 02:11:25]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/2e/80/log.46676269._008443.job.log.tgz.1
[2025-10-09 02:11:25]  workdir=None
[2025-10-09 02:11:25] ]
[2025-10-09 02:11:25] 2025-10-09 00:10:49,218 | INFO     | transferring file log.46676269._008443.job.log.tgz.1 from /var/lib/boinc-client/slots/0/PanDA_Pilot-6836599912/log.46676269._008443.job.log.tgz.1 to /var/lib/boinc
[2025-10-09 02:11:25] 2025-10-09 00:10:49,218 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc-client/slots/0/PanDA_Pilot-6836599912/log.46676269._008443.job.log.tgz.1 /var/lib/boinc-client/slots/0/log.466762
[2025-10-09 02:11:25] 2025-10-09 00:10:49,227 | INFO     | adding to output.list: log.46676269._008443.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/2e/80/log.46676269._008443.job.log.tg
[2025-10-09 02:11:25] 2025-10-09 00:10:49,228 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-09 02:11:25] 2025-10-09 00:10:49,228 | INFO     | summary of transferred files:
[2025-10-09 02:11:25] 2025-10-09 00:10:49,228 | INFO     |  -- lfn=log.46676269._008443.job.log.tgz.1, status_code=0, status=transferred
[2025-10-09 02:11:25] 2025-10-09 00:10:49,228 | INFO     | stage-out finished correctly
[2025-10-09 02:11:25] 2025-10-09 00:10:50,744 | INFO     | time since job start (1855s) is within the limit (172800.0s)
[2025-10-09 02:11:25] 2025-10-09 00:10:52,330 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-09 02:11:25] 2025-10-09 00:10:52,359 | INFO     | job 6836599912 has state=finished
[2025-10-09 02:11:25] 2025-10-09 00:10:52,359 | INFO     | preparing for final server update for job 6836599912 in state='finished'
[2025-10-09 02:11:25] 2025-10-09 00:10:52,359 | INFO     | this job has now completed (state=finished)
[2025-10-09 02:11:25] 2025-10-09 00:10:52,359 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-09 02:11:25] 2025-10-09 00:10:52,360 | INFO     | log transfer has been attempted: DONE
[2025-10-09 02:11:25] 2025-10-09 00:10:52,360 | INFO     | job 6836599912 has finished - writing final server update
[2025-10-09 02:11:25] 2025-10-09 00:10:52,360 | INFO     | total number of processed events: 400 (read)
[2025-10-09 02:11:25] 2025-10-09 00:10:52,360 | INFO     | executing command: lscpu
[2025-10-09 02:11:25] 2025-10-09 00:10:52,374 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-09 02:11:25] 2025-10-09 00:10:52,749 | INFO     | time since job start (1857s) is within the limit (172800.0s)
[2025-10-09 02:11:25] 2025-10-09 00:10:54,027 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-09 02:11:25] 2025-10-09 00:10:54,029 | INFO     | found 8 cores (8 cores per socket, 1 socket) HT, CPU MHz: 3393.4011875
[2025-10-09 02:11:25] 2025-10-09 00:10:54,030 | INFO     | using path: /var/lib/boinc-client/slots/0/PanDA_Pilot-6836599912/memory_monitor_summary.json (trf name=prmon)
[2025-10-09 02:11:25] 2025-10-09 00:10:54,030 | INFO     | extracted standard info from prmon json
[2025-10-09 02:11:25] 2025-10-09 00:10:54,030 | INFO     | extracted standard memory fields from prmon json
[2025-10-09 02:11:25] 2025-10-09 00:10:54,030 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-09 02:11:25] 2025-10-09 00:10:54,031 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-09 02:11:25] 2025-10-09 00:10:54,031 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-09 02:11:25] 2025-10-09 00:10:54,031 | INFO     | fitting pss+swap vs Time
[2025-10-09 02:11:25] 2025-10-09 00:10:54,031 | INFO     | sum of square deviations: 4279150.0
[2025-10-09 02:11:25] 2025-10-09 00:10:54,031 | INFO     | sum of deviations: 113646171.99999999
[2025-10-09 02:11:25] 2025-10-09 00:10:54,031 | INFO     | mean x: 1759967818.5
[2025-10-09 02:11:25] 2025-10-09 00:10:54,031 | INFO     | mean y: 3136268.5833333335
[2025-10-09 02:11:25] 2025-10-09 00:10:54,031 | INFO     | -- intersect: -46738297290.818825
[2025-10-09 02:11:25] 2025-10-09 00:10:54,031 | INFO     | intersect: -46738297290.818825
[2025-10-09 02:11:25] 2025-10-09 00:10:54,031 | INFO     | chi2: 1.5750727859717698e-05
[2025-10-09 02:11:25] 2025-10-09 00:10:54,031 | INFO     | -- intersect: -46738297290.818825
[2025-10-09 02:11:25] 2025-10-09 00:10:54,031 | INFO     | current memory leak: 26.56 B/s (using 24 data points, chi2=0.00)
[2025-10-09 02:11:25] 2025-10-09 00:10:54,032 | INFO     | could have reported an average CPU frequency of 3662 MHz (5 samples)
[2025-10-09 02:11:25] 2025-10-09 00:10:54,032 | INFO     | ..............................
[2025-10-09 02:11:25] 2025-10-09 00:10:54,032 | INFO     | . Timing measurements:
[2025-10-09 02:11:25] 2025-10-09 00:10:54,032 | INFO     | . get job = 0 s
[2025-10-09 02:11:25] 2025-10-09 00:10:54,032 | INFO     | . initial setup = 1 s
[2025-10-09 02:11:25] 2025-10-09 00:10:54,032 | INFO     | . payload setup = 2 s
[2025-10-09 02:11:25] 2025-10-09 00:10:54,032 | INFO     | . stage-in = 0 s
[2025-10-09 02:11:25] 2025-10-09 00:10:54,032 | INFO     | . payload execution = 1835 s
[2025-10-09 02:11:25] 2025-10-09 00:10:54,032 | INFO     | . stage-out = 0 s
[2025-10-09 02:11:25] 2025-10-09 00:10:54,032 | INFO     | . log creation = 0 s
[2025-10-09 02:11:25] 2025-10-09 00:10:54,032 | INFO     | ..............................
[2025-10-09 02:11:25] 2025-10-09 00:10:54,063 | INFO     | 
[2025-10-09 02:11:25] 2025-10-09 00:10:54,063 | INFO     | job summary report
[2025-10-09 02:11:25] 2025-10-09 00:10:54,063 | INFO     | --------------------------------------------------
[2025-10-09 02:11:25] 2025-10-09 00:10:54,063 | INFO     | PanDA job id: 6836599912
[2025-10-09 02:11:25] 2025-10-09 00:10:54,063 | INFO     | task id: 46676269
[2025-10-09 02:11:25] 2025-10-09 00:10:54,063 | INFO     | errors: (none)
[2025-10-09 02:11:25] 2025-10-09 00:10:54,063 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-09 02:11:25] 2025-10-09 00:10:54,063 | INFO     | pilot state: finished 
[2025-10-09 02:11:25] 2025-10-09 00:10:54,063 | INFO     | transexitcode: 0
[2025-10-09 02:11:25] 2025-10-09 00:10:54,064 | INFO     | exeerrorcode: 0
[2025-10-09 02:11:25] 2025-10-09 00:10:54,064 | INFO     | exeerrordiag: 
[2025-10-09 02:11:25] 2025-10-09 00:10:54,064 | INFO     | exitcode: 0
[2025-10-09 02:11:25] 2025-10-09 00:10:54,064 | INFO     | exitmsg: OK
[2025-10-09 02:11:25] 2025-10-09 00:10:54,064 | INFO     | cpuconsumptiontime: 20493 s
[2025-10-09 02:11:25] 2025-10-09 00:10:54,064 | INFO     | nevents: 400
[2025-10-09 02:11:25] 2025-10-09 00:10:54,064 | INFO     | neventsw: 0
[2025-10-09 02:11:25] 2025-10-09 00:10:54,064 | INFO     | pid: 173691
[2025-10-09 02:11:25] 2025-10-09 00:10:54,064 | INFO     | pgrp: 173691
[2025-10-09 02:11:25] 2025-10-09 00:10:54,064 | INFO     | corecount: 12
[2025-10-09 02:11:25] 2025-10-09 00:10:54,064 | INFO     | event service: False
[2025-10-09 02:11:25] 2025-10-09 00:10:54,064 | INFO     | sizes: {0: 2348859, 2: 2349121, 11: 2349149, 1841: 2374082, 1842: 2383094, 1845: 2383150, 1847: 2383504}
[2025-10-09 02:11:25] 2025-10-09 00:10:54,064 | INFO     | --------------------------------------------------
[2025-10-09 02:11:25] 2025-10-09 00:10:54,064 | INFO     | 
[2025-10-09 02:11:25] 2025-10-09 00:10:54,064 | INFO     | executing command: ls -lF /var/lib/boinc-client/slots/0
[2025-10-09 02:11:25] 2025-10-09 00:10:54,074 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-09 02:11:25] 2025-10-09 00:10:54,074 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-09 02:11:25] 2025-10-09 00:10:54,074 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-09 02:11:25] 2025-10-09 00:10:54,074 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-09 02:11:25] 2025-10-09 00:10:54,074 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-09 02:11:25] 2025-10-09 00:10:54,074 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-09 02:11:25] 2025-10-09 00:10:54,074 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-09 02:11:25] 2025-10-09 00:10:54,074 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-09 02:11:25] 2025-10-09 00:10:54,074 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-09 02:11:25] 2025-10-09 00:10:54,074 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-09 02:11:25] 2025-10-09 00:10:54,074 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-09 02:11:25] 2025-10-09 00:10:54,074 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-09 02:11:25] 2025-10-09 00:10:54,074 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-09 02:11:25] 2025-10-09 00:10:54,074 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-09 02:11:25] 2025-10-09 00:10:54,074 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-09 02:11:25] 2025-10-09 00:10:54,075 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-09 02:11:25] 2025-10-09 00:10:54,075 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-09 02:11:25] 2025-10-09 00:10:54,075 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-09 02:11:25] 2025-10-09 00:10:54,075 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-09 02:11:25] 2025-10-09 00:10:54,075 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-09 02:11:25] 2025-10-09 00:10:54,075 | INFO     | job 6836599912 has completed (purged errors)
[2025-10-09 02:11:25] 2025-10-09 00:10:54,075 | INFO     | overall cleanup function is called
[2025-10-09 02:11:25] 2025-10-09 00:10:54,994 | WARNING  | process 173691 can no longer be monitored (due to stat problems) - aborting
[2025-10-09 02:11:25] 2025-10-09 00:10:55,038 | INFO     | using path: /var/lib/boinc-client/slots/0/memory_monitor_summary.json (trf name=prmon)
[2025-10-09 02:11:25] 2025-10-09 00:10:55,081 | INFO     | --- collectZombieJob: --- 10, [173691]
[2025-10-09 02:11:25] 2025-10-09 00:10:55,081 | INFO     | zombie collector waiting for pid 173691
[2025-10-09 02:11:25] 2025-10-09 00:10:55,081 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-09 02:11:25] 2025-10-09 00:10:55,081 | INFO     | collected zombie processes
[2025-10-09 02:11:25] 2025-10-09 00:10:55,081 | INFO     | will attempt to kill all subprocesses of pid=173691
[2025-10-09 02:11:25] 2025-10-09 00:10:55,112 | INFO     | number of running child processes to parent process 173691: 1
[2025-10-09 02:11:25] 2025-10-09 00:10:55,112 | INFO     | maximum number of monitored processes: 6
[2025-10-09 02:11:25] 2025-10-09 00:10:55,113 | INFO     | aborting job monitoring since job object (job id=6836599912) has expired
[2025-10-09 02:11:25] 2025-10-09 00:10:55,156 | INFO     | process IDs to be killed: [173691] (in reverse order)
[2025-10-09 02:11:25] 2025-10-09 00:10:55,181 | WARNING  | found no corresponding commands to process id(s)
[2025-10-09 02:11:25] 2025-10-09 00:10:55,182 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-09 02:11:25] 2025-10-09 00:10:55,183 | INFO     | did not find any defunct processes belonging to 173691
[2025-10-09 02:11:25] 2025-10-09 00:10:55,185 | INFO     | did not find any defunct processes belonging to 173691
[2025-10-09 02:11:25] 2025-10-09 00:10:55,185 | INFO     | ready for new job
[2025-10-09 02:11:25] 2025-10-09 00:10:55,185 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-09 02:11:25] 2025-10-09 00:10:55,186 | INFO     | ***************************************
[2025-10-09 02:11:25] 2025-10-09 00:10:55,186 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-09 02:11:25] 2025-10-09 00:10:55,186 | INFO     | ***************************************
[2025-10-09 02:11:25] 2025-10-09 00:10:55,186 | INFO     | 
[2025-10-09 02:11:25] 2025-10-09 00:10:55,186 | INFO     | architecture information:
[2025-10-09 02:11:25] 2025-10-09 00:10:55,186 | INFO     | executing command: cat /etc/os-release
[2025-10-09 02:11:25] 2025-10-09 00:10:55,192 | INFO     | cat /etc/os-release:
[2025-10-09 02:11:25] NAME="CentOS Linux"
[2025-10-09 02:11:25] VERSION="7 (Core)"
[2025-10-09 02:11:25] ID="centos"
[2025-10-09 02:11:25] ID_LIKE="rhel fedora"
[2025-10-09 02:11:25] VERSION_ID="7"
[2025-10-09 02:11:25] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-09 02:11:25] ANSI_COLOR="0;31"
[2025-10-09 02:11:25] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-09 02:11:25] HOME_URL="https://www.centos.org/"
[2025-10-09 02:11:25] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-09 02:11:25] 
[2025-10-09 02:11:25] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-09 02:11:25] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-09 02:11:25] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-09 02:11:25] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-09 02:11:25] 
[2025-10-09 02:11:25] 2025-10-09 00:10:55,193 | INFO     | ***************************************
[2025-10-09 02:11:25] 2025-10-09 00:10:55,694 | INFO     | executing command: df -mP /var/lib/boinc-client/slots/0
[2025-10-09 02:11:25] 2025-10-09 00:10:55,702 | INFO     | sufficient remaining disk space (533886664704 B)
[2025-10-09 02:11:25] 2025-10-09 00:10:55,702 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-09 02:11:25] 2025-10-09 00:10:55,702 | INFO     | current server update state: UPDATING_FINAL
[2025-10-09 02:11:25] 2025-10-09 00:10:55,703 | INFO     | update_server=False
[2025-10-09 02:11:25] 2025-10-09 00:10:55,703 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-09 02:11:25] 2025-10-09 00:10:55,703 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-09 02:11:25] 2025-10-09 00:10:55,703 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-09 02:11:25] 2025-10-09 00:10:55,703 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-09 02:11:25] 2025-10-09 00:10:55,703 | INFO     | will abort loop
[2025-10-09 02:11:25] 2025-10-09 00:10:56,127 | INFO     | all job control threads have been joined
[2025-10-09 02:11:25] 2025-10-09 00:10:56,190 | INFO     | all data control threads have been joined
[2025-10-09 02:11:25] 2025-10-09 00:10:56,590 | INFO     | all payload control threads have been joined
[2025-10-09 02:11:25] 2025-10-09 00:10:56,708 | INFO     | [job] queue monitor thread has finished
[2025-10-09 02:11:25] 2025-10-09 00:10:56,708 | INFO     | [job] retrieve thread has finished
[2025-10-09 02:11:25] 2025-10-09 00:10:56,708 | INFO     | [job] job monitor thread has finished
[2025-10-09 02:11:25] 2025-10-09 00:10:56,803 | INFO     | [payload] failed_post thread has finished
[2025-10-09 02:11:25] 2025-10-09 00:10:57,132 | INFO     | [job] control thread has finished
[2025-10-09 02:11:25] 2025-10-09 00:10:57,195 | INFO     | [data] control thread has finished
[2025-10-09 02:11:25] 2025-10-09 00:10:57,433 | INFO     | [payload] execute_payloads thread has finished
[2025-10-09 02:11:25] 2025-10-09 00:10:57,595 | INFO     | [payload] control thread has finished
[2025-10-09 02:11:25] 2025-10-09 00:10:57,600 | INFO     | [job] validate thread has finished
[2025-10-09 02:11:25] 2025-10-09 00:10:57,655 | INFO     | [job] create_data_payload thread has finished
[2025-10-09 02:11:25] 2025-10-09 00:10:57,706 | INFO     | [data] copytool_out thread has finished
[2025-10-09 02:11:25] 2025-10-09 00:10:57,714 | INFO     | [payload] validate_pre thread has finished
[2025-10-09 02:11:25] 2025-10-09 00:10:57,855 | INFO     | [monitor] cgroup control has ended
[2025-10-09 02:11:25] 2025-10-09 00:10:57,966 | INFO     | [payload] validate_post thread has finished
[2025-10-09 02:11:25] 2025-10-09 00:10:58,016 | INFO     | [data] copytool_in thread has finished
[2025-10-09 02:11:25] 2025-10-09 00:10:58,365 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-09 02:11:25] 2025-10-09 00:11:02,370 | INFO     | [data] queue_monitor thread has finished
[2025-10-09 02:11:25] 2025-10-09 00:11:06,509 | INFO     | job.realtimelogging is not enabled
[2025-10-09 02:11:25] 2025-10-09 00:11:07,514 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-09 02:11:25] 2025-10-09 00:11:09,057 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 129948930565952)>', '<ExcThread(monitor, started 129948446611200)>']
[2025-10-09 02:11:25] 2025-10-09 00:11:14,058 | INFO     | all workflow threads have been joined
[2025-10-09 02:11:25] 2025-10-09 00:11:14,058 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-09 02:11:25] 2025-10-09 00:11:14,058 | INFO     | traces error code: 0
[2025-10-09 02:11:25] 2025-10-09 00:11:14,059 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-09 02:11:25] 2025-10-09 00:11:25,878 | INFO     | PID=167158 has CPU usage=1.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-10-09 02:11:25] 2025-10-09 00:11:25,878 | INFO     | found 0 job(s) in 20 queues
[2025-10-09 02:11:25] 2025-10-09 00:11:25,879 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-09 02:11:25] 2025-10-09 00:11:25,879 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-09 02:11:25] 2025-10-09 00:11:25,879 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-09 02:11:25] 2025-10-09 00:11:25,879 | INFO     | [monitor] control thread has ended
[2025-10-09 02:11:25] 2025-10-09 00:11:25,920 [wrapper] ==== pilot stdout END ====
[2025-10-09 02:11:25] 2025-10-09 00:11:25,922 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-09 02:11:25] 2025-10-09 00:11:25,923 [wrapper] pilotpid: 167158
[2025-10-09 02:11:25] 2025-10-09 00:11:25,924 [wrapper] Pilot exit status: 0
[2025-10-09 02:11:25] 2025-10-09 00:11:25,929 [wrapper] pandaids: 6836599912
[2025-10-09 02:11:25] 2025-10-09 00:11:25,947 [wrapper] cleanup supervisor_pilot  184263 167159
[2025-10-09 02:11:25] 2025-10-09 00:11:25,949 [wrapper] Test setup, not cleaning
[2025-10-09 02:11:25] 2025-10-09 00:11:25,950 [wrapper] apfmon messages muted
[2025-10-09 02:11:25] 2025-10-09 00:11:25,951 [wrapper] ==== wrapper stdout END ====
[2025-10-09 02:11:25] 2025-10-09 00:11:25,953 [wrapper] ==== wrapper stderr END ====
[2025-10-09 02:11:25]  *** Error codes and diagnostics ***
[2025-10-09 02:11:25]     "exeErrorCode": 0,
[2025-10-09 02:11:25]     "exeErrorDiag": "",
[2025-10-09 02:11:25]     "pilotErrorCode": 0,
[2025-10-09 02:11:25]     "pilotErrorDiag": "",
[2025-10-09 02:11:25]  *** Listing of results directory ***
[2025-10-09 02:11:25] total 411248
[2025-10-09 02:11:25] -rw-r--r-- 1 boinc boinc    557409 Okt  9 00:57 pilot3.tar.gz
[2025-10-09 02:11:25] -rwx------ 1 boinc boinc     36292 Okt  9 01:00 runpilot2-wrapper.sh
[2025-10-09 02:11:25] -rw-r--r-- 1 boinc boinc      5112 Okt  9 01:01 queuedata.json
[2025-10-09 02:11:25] -rw-r--r-- 1 boinc boinc       100 Okt  9 01:39 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-09 02:11:25] -rwxr-xr-x 1 boinc boinc      7986 Okt  9 01:39 run_atlas
[2025-10-09 02:11:25] -rw-r--r-- 1 boinc boinc       105 Okt  9 01:39 job.xml
[2025-10-09 02:11:25] -rw-r--r-- 2 boinc boinc 219874955 Okt  9 01:39 EVNT.46676267._000337.pool.root.1
[2025-10-09 02:11:25] drwxrwx--x 2 boinc boinc      4096 Okt  9 01:39 shared
[2025-10-09 02:11:25] -rw-r--r-- 2 boinc boinc    569679 Okt  9 01:39 input.tar.gz
[2025-10-09 02:11:25] -rw-r--r-- 2 boinc boinc     15120 Okt  9 01:39 start_atlas.sh
[2025-10-09 02:11:25] -rw-r--r-- 1 boinc boinc         0 Okt  9 01:39 boinc_setup_complete
[2025-10-09 02:11:25] -rw-r--r-- 1 boinc boinc      9677 Okt  9 01:39 init_data.xml
[2025-10-09 02:11:25] -rw-r--r-- 1 boinc boinc         0 Okt  9 01:39 boinc_lockfile
[2025-10-09 02:11:25] -rw-r--r-- 1 boinc boinc      2548 Okt  9 01:39 pandaJob.out
[2025-10-09 02:11:25] -rw------- 1 boinc boinc    979298 Okt  9 01:39 agis_schedconf.cvmfs.json
[2025-10-09 02:11:25] -rw------- 1 boinc boinc   1560401 Okt  9 01:39 agis_ddmendpoints.agis.ALL.json
[2025-10-09 02:11:25] drwx------ 5 boinc boinc      4096 Okt  9 01:39 pilot3
[2025-10-09 02:11:25] -rw------- 1 boinc boinc 195994477 Okt  9 02:10 HITS.46676269._008443.pool.root.1
[2025-10-09 02:11:25] -rw-r--r-- 1 boinc boinc       530 Okt  9 02:10 boinc_task_state.xml
[2025-10-09 02:11:25] -rw------- 1 boinc boinc      1023 Okt  9 02:10 memory_monitor_summary.json
[2025-10-09 02:11:25] -rw------- 1 boinc boinc    361060 Okt  9 02:10 log.46676269._008443.job.log.tgz.1
[2025-10-09 02:11:25] -rw------- 1 boinc boinc      7734 Okt  9 02:10 heartbeat.json
[2025-10-09 02:11:25] -rw-r--r-- 1 boinc boinc      8192 Okt  9 02:11 boinc_mmap_file
[2025-10-09 02:11:25] -rw-r--r-- 1 boinc boinc        27 Okt  9 02:11 wrapper_checkpoint.txt
[2025-10-09 02:11:25] -rw------- 1 boinc boinc       746 Okt  9 02:11 pilotlog.txt
[2025-10-09 02:11:25] -rw------- 1 boinc boinc        95 Okt  9 02:11 pilot_heartbeat.json
[2025-10-09 02:11:25] -rw------- 1 boinc boinc    307399 Okt  9 02:11 log.46676269._008443.job.log.1
[2025-10-09 02:11:25] -rw------- 1 boinc boinc       357 Okt  9 02:11 output.list
[2025-10-09 02:11:25] -rw-r--r-- 1 boinc boinc       620 Okt  9 02:11 runtime_log
[2025-10-09 02:11:25] -rw------- 1 boinc boinc    686080 Okt  9 02:11 result.tar.gz
[2025-10-09 02:11:25] -rw-r--r-- 1 boinc boinc      8766 Okt  9 02:11 runtime_log.err
[2025-10-09 02:11:25] -rw------- 1 boinc boinc       645 Okt  9 02:11 5Y8NDmgKsQ8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmTTYNDmqLNFon.diag
[2025-10-09 02:11:25] -rw-r--r-- 1 boinc boinc     21755 Okt  9 02:11 stderr.txt
[2025-10-09 02:11:25] HITS file was successfully produced:
[2025-10-09 02:11:25] -rw------- 1 boinc boinc 195994477 Okt  9 02:10 shared/HITS.pool.root.1
[2025-10-09 02:11:25]  *** Contents of shared directory: ***
[2025-10-09 02:11:25] total 407384
[2025-10-09 02:11:25] -rw-r--r-- 2 boinc boinc 219874955 Okt  9 01:39 ATLAS.root_0
[2025-10-09 02:11:25] -rw-r--r-- 2 boinc boinc    569679 Okt  9 01:39 input.tar.gz
[2025-10-09 02:11:25] -rw-r--r-- 2 boinc boinc     15120 Okt  9 01:39 start_atlas.sh
[2025-10-09 02:11:25] -rw------- 1 boinc boinc 195994477 Okt  9 02:10 HITS.pool.root.1
[2025-10-09 02:11:25] -rw------- 1 boinc boinc    686080 Okt  9 02:11 result.tar.gz
02:11:27 (163374): run_atlas exited; CPU time 20489.937699
02:11:27 (163374): called boinc_finish(0)

</stderr_txt>
]]>

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