Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
18:55:14 (15296): wrapper (7.7.26015): starting
18:55:14 (15296): wrapper: running run_atlas (--nthreads 8)
[2025-10-08 18:55:14] Arguments: --nthreads 8
[2025-10-08 18:55:14] Threads: 8
[2025-10-08 18:55:14] Checking for CVMFS
[2025-10-08 18:55:15] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-08 18:55:15] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-08 18:55:15] Running cvmfs_config stat atlas.cern.ch
[2025-10-08 18:55:15] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-08 18:55:15] 2.11.2.0 2783 12037 84232 151488 1 1 18123858 20275200 1 130560 0 7653284 99.989 389300 37461 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-08 18:55:15] CVMFS is ok
[2025-10-08 18:55:15] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-08 18:55:15] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-08 18:55:15] Further information can be found at the LHC@home message board.
[2025-10-08 18:55:15] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-08 18:55:15] Checking for apptainer binary...
[2025-10-08 18:55:15] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-08 18:55:15] Running /usr/bin/apptainer --version
[2025-10-08 18:55:15] apptainer version 1.3.2-1.el7
[2025-10-08 18:55:15] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-08 18:55:17] c-204-38.aglt2.org
[2025-10-08 18:55:17] apptainer works
[2025-10-08 18:55:17] Set ATHENA_PROC_NUMBER=8
[2025-10-08 18:55:17] Set ATHENA_CORE_NUMBER=8
[2025-10-08 18:55:17] Starting ATLAS job with PandaID=6836332691
[2025-10-08 18:55:17] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-08 21:04:53]  *** The last 200 lines of the pilot log: ***
[2025-10-08 21:04:53] 2025-10-09 01:04:16,967 | INFO     | PID=18983 has CPU usage=6.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-08 21:04:53] 2025-10-09 01:04:17,049 | INFO     | CPU arch script returned: x86-64-v2
[2025-10-08 21:04:53] 2025-10-09 01:04:17,052 | INFO     | found 8 cores (4 cores per socket, 2 sockets) , CPU MHz: 1695.875
[2025-10-08 21:04:53] 2025-10-09 01:04:17,055 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6836332691/memory_monitor_summary.json (trf name=prmon)
[2025-10-08 21:04:53] 2025-10-09 01:04:17,056 | INFO     | extracted standard info from prmon json
[2025-10-08 21:04:53] 2025-10-09 01:04:17,056 | INFO     | extracted standard memory fields from prmon json
[2025-10-08 21:04:53] 2025-10-09 01:04:17,056 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-08 21:04:53] 2025-10-09 01:04:17,056 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-08 21:04:53] 2025-10-09 01:04:17,056 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-08 21:04:53] 2025-10-09 01:04:17,059 | INFO     | fitting pss+swap vs Time
[2025-10-08 21:04:53] 2025-10-09 01:04:17,060 | INFO     | sum of square deviations: 620244187.5
[2025-10-08 21:04:53] 2025-10-09 01:04:17,060 | INFO     | sum of deviations: 12571386879.5
[2025-10-08 21:04:53] 2025-10-09 01:04:17,061 | INFO     | mean x: 1759967979.5
[2025-10-08 21:04:53] 2025-10-09 01:04:17,061 | INFO     | mean y: 2502851.0396825396
[2025-10-08 21:04:53] 2025-10-09 01:04:17,061 | INFO     | -- intersect: -35669316106.27449
[2025-10-08 21:04:53] 2025-10-09 01:04:17,061 | INFO     | intersect: -35669316106.27449
[2025-10-08 21:04:53] 2025-10-09 01:04:17,061 | INFO     | chi2: 1.4565349480420031
[2025-10-08 21:04:53] 2025-10-09 01:04:17,062 | INFO     | sum of square deviations: 549294020.0
[2025-10-08 21:04:53] 2025-10-09 01:04:17,062 | INFO     | sum of deviations: 12057655401.999998
[2025-10-08 21:04:53] 2025-10-09 01:04:17,063 | INFO     | mean x: 1759967827.0
[2025-10-08 21:04:53] 2025-10-09 01:04:17,063 | INFO     | mean y: 2501746.247933884
[2025-10-08 21:04:53] 2025-10-09 01:04:17,063 | INFO     | -- intersect: -38630880019.99221
[2025-10-08 21:04:53] 2025-10-09 01:04:17,063 | INFO     | intersect: -38630880019.99221
[2025-10-08 21:04:53] 2025-10-09 01:04:17,063 | INFO     | chi2: 1.4589183926448999
[2025-10-08 21:04:53] 2025-10-09 01:04:17,063 | INFO     | current chi2=1.4589183926448999 (change=-0.16363799619780986 %)
[2025-10-08 21:04:53] 2025-10-09 01:04:17,063 | INFO     | right removable region: 120
[2025-10-08 21:04:53] 2025-10-09 01:04:17,064 | INFO     | sum of square deviations: 549294020.0
[2025-10-08 21:04:53] 2025-10-09 01:04:17,064 | INFO     | sum of deviations: -5428953518.000001
[2025-10-08 21:04:53] 2025-10-09 01:04:17,064 | INFO     | mean x: 1759968132.0
[2025-10-08 21:04:53] 2025-10-09 01:04:17,065 | INFO     | mean y: 2540796.0578512396
[2025-10-08 21:04:53] 2025-10-09 01:04:17,065 | INFO     | -- intersect: 17397205281.553776
[2025-10-08 21:04:53] 2025-10-09 01:04:17,065 | INFO     | intersect: 17397205281.553776
[2025-10-08 21:04:53] 2025-10-09 01:04:17,065 | INFO     | chi2: 0.07353867290428374
[2025-10-08 21:04:53] 2025-10-09 01:04:17,065 | INFO     | current chi2=0.07353867290428374 (change=94.95112197595117 %)
[2025-10-08 21:04:53] 2025-10-09 01:04:17,065 | INFO     | sum of square deviations: 483971865.0
[2025-10-08 21:04:53] 2025-10-09 01:04:17,066 | INFO     | sum of deviations: -4218795990.0000014
[2025-10-08 21:04:53] 2025-10-09 01:04:17,066 | INFO     | mean x: 1759968284.5
[2025-10-08 21:04:53] 2025-10-09 01:04:17,066 | INFO     | mean y: 2537843.6551724137
[2025-10-08 21:04:53] 2025-10-09 01:04:17,066 | INFO     | -- intersect: 15344229537.191494
[2025-10-08 21:04:53] 2025-10-09 01:04:17,067 | INFO     | intersect: 15344229537.191494
[2025-10-08 21:04:53] 2025-10-09 01:04:17,067 | INFO     | chi2: 0.05793319384981182
[2025-10-08 21:04:53] 2025-10-09 01:04:17,067 | INFO     | current chi2=0.05793319384981182 (change=21.220778725207158 %)
[2025-10-08 21:04:53] 2025-10-09 01:04:17,067 | INFO     | left removable region: 20
[2025-10-08 21:04:53] 2025-10-09 01:04:17,067 | INFO     | sum of square deviations: 310052325.0
[2025-10-08 21:04:53] 2025-10-09 01:04:17,068 | INFO     | sum of deviations: 1169030108.0
[2025-10-08 21:04:53] 2025-10-09 01:04:17,068 | INFO     | mean x: 1759968406.5
[2025-10-08 21:04:53] 2025-10-09 01:04:17,068 | INFO     | mean y: 2523239.8
[2025-10-08 21:04:53] 2025-10-09 01:04:17,068 | INFO     | -- intersect: -6633311715.887827
[2025-10-08 21:04:53] 2025-10-09 01:04:17,068 | INFO     | intersect: -6633311715.887827
[2025-10-08 21:04:53] 2025-10-09 01:04:17,068 | INFO     | chi2: 0.000311411696697554
[2025-10-08 21:04:53] 2025-10-09 01:04:17,069 | INFO     | -- intersect: -6633311715.887827
[2025-10-08 21:04:53] 2025-10-09 01:04:17,069 | INFO     | current memory leak: 3.77 B/s (using 100 data points, chi2=0.00)
[2025-10-08 21:04:53] 2025-10-09 01:04:17,069 | INFO     | could have reported an average CPU frequency of 1983 MHz (8 samples)
[2025-10-08 21:04:53] 2025-10-09 01:04:17,069 | INFO     | ..............................
[2025-10-08 21:04:53] 2025-10-09 01:04:17,069 | INFO     | . Timing measurements:
[2025-10-08 21:04:53] 2025-10-09 01:04:17,070 | INFO     | . get job = 0 s
[2025-10-08 21:04:53] 2025-10-09 01:04:17,070 | INFO     | . initial setup = 2 s
[2025-10-08 21:04:53] 2025-10-09 01:04:17,070 | INFO     | . payload setup = 8 s
[2025-10-08 21:04:53] 2025-10-09 01:04:17,070 | INFO     | . stage-in = 0 s
[2025-10-08 21:04:53] 2025-10-09 01:04:17,070 | INFO     | . payload execution = 7681 s
[2025-10-08 21:04:53] 2025-10-09 01:04:17,070 | INFO     | . stage-out = 0 s
[2025-10-08 21:04:53] 2025-10-09 01:04:17,070 | INFO     | . log creation = 0 s
[2025-10-08 21:04:53] 2025-10-09 01:04:17,070 | INFO     | ..............................
[2025-10-08 21:04:53] 2025-10-09 01:04:17,444 | INFO     | 
[2025-10-08 21:04:53] 2025-10-09 01:04:17,445 | INFO     | job summary report
[2025-10-08 21:04:53] 2025-10-09 01:04:17,445 | INFO     | --------------------------------------------------
[2025-10-08 21:04:53] 2025-10-09 01:04:17,445 | INFO     | PanDA job id: 6836332691
[2025-10-08 21:04:53] 2025-10-09 01:04:17,445 | INFO     | task id: 46676269
[2025-10-08 21:04:53] 2025-10-09 01:04:17,445 | INFO     | errors: (none)
[2025-10-08 21:04:53] 2025-10-09 01:04:17,446 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-08 21:04:53] 2025-10-09 01:04:17,446 | INFO     | pilot state: finished 
[2025-10-08 21:04:53] 2025-10-09 01:04:17,446 | INFO     | transexitcode: 0
[2025-10-08 21:04:53] 2025-10-09 01:04:17,446 | INFO     | exeerrorcode: 0
[2025-10-08 21:04:53] 2025-10-09 01:04:17,446 | INFO     | exeerrordiag: 
[2025-10-08 21:04:53] 2025-10-09 01:04:17,446 | INFO     | exitcode: 0
[2025-10-08 21:04:53] 2025-10-09 01:04:17,447 | INFO     | exitmsg: OK
[2025-10-08 21:04:53] 2025-10-09 01:04:17,447 | INFO     | cpuconsumptiontime: 55707 s
[2025-10-08 21:04:53] 2025-10-09 01:04:17,447 | INFO     | nevents: 400
[2025-10-08 21:04:53] 2025-10-09 01:04:17,447 | INFO     | neventsw: 0
[2025-10-08 21:04:53] 2025-10-09 01:04:17,447 | INFO     | pid: 25384
[2025-10-08 21:04:53] 2025-10-09 01:04:17,447 | INFO     | pgrp: 25384
[2025-10-08 21:04:53] 2025-10-09 01:04:17,448 | INFO     | corecount: 8
[2025-10-08 21:04:53] 2025-10-09 01:04:17,448 | INFO     | event service: False
[2025-10-08 21:04:53] 2025-10-09 01:04:17,448 | INFO     | sizes: {0: 2348738, 1: 2348880, 6: 2349142, 11: 2349170, 7694: 2376769, 7695: 2385767, 7697: 2385951, 7704: 2386145}
[2025-10-08 21:04:53] 2025-10-09 01:04:17,448 | INFO     | --------------------------------------------------
[2025-10-08 21:04:53] 2025-10-09 01:04:17,448 | INFO     | 
[2025-10-08 21:04:53] 2025-10-09 01:04:17,449 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-10-08 21:04:53] 2025-10-09 01:04:17,478 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-08 21:04:53] 2025-10-09 01:04:17,478 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-08 21:04:53] 2025-10-09 01:04:17,478 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-08 21:04:53] 2025-10-09 01:04:17,478 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-08 21:04:53] 2025-10-09 01:04:17,479 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-08 21:04:53] 2025-10-09 01:04:17,479 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-08 21:04:53] 2025-10-09 01:04:17,479 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-08 21:04:53] 2025-10-09 01:04:17,479 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-08 21:04:53] 2025-10-09 01:04:17,479 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-08 21:04:53] 2025-10-09 01:04:17,480 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-08 21:04:53] 2025-10-09 01:04:17,480 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-08 21:04:53] 2025-10-09 01:04:17,480 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-08 21:04:53] 2025-10-09 01:04:17,480 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-08 21:04:53] 2025-10-09 01:04:17,480 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-08 21:04:53] 2025-10-09 01:04:17,481 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-08 21:04:53] 2025-10-09 01:04:17,481 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-08 21:04:53] 2025-10-09 01:04:17,481 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-08 21:04:53] 2025-10-09 01:04:17,481 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-08 21:04:53] 2025-10-09 01:04:17,481 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-08 21:04:53] 2025-10-09 01:04:17,481 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-08 21:04:53] 2025-10-09 01:04:17,482 | INFO     | job 6836332691 has completed (purged errors)
[2025-10-08 21:04:53] 2025-10-09 01:04:17,482 | INFO     | overall cleanup function is called
[2025-10-08 21:04:53] 2025-10-09 01:04:18,487 | INFO     | --- collectZombieJob: --- 10, [25384]
[2025-10-08 21:04:53] 2025-10-09 01:04:18,488 | INFO     | zombie collector waiting for pid 25384
[2025-10-08 21:04:53] 2025-10-09 01:04:18,488 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-08 21:04:53] 2025-10-09 01:04:18,488 | INFO     | collected zombie processes
[2025-10-08 21:04:53] 2025-10-09 01:04:18,488 | INFO     | will attempt to kill all subprocesses of pid=25384
[2025-10-08 21:04:53] 2025-10-09 01:04:18,580 | INFO     | process IDs to be killed: [25384] (in reverse order)
[2025-10-08 21:04:53] 2025-10-09 01:04:18,636 | WARNING  | found no corresponding commands to process id(s)
[2025-10-08 21:04:53] 2025-10-09 01:04:18,637 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-08 21:04:53] 2025-10-09 01:04:18,641 | INFO     | did not find any defunct processes belonging to 25384
[2025-10-08 21:04:53] 2025-10-09 01:04:18,645 | INFO     | did not find any defunct processes belonging to 25384
[2025-10-08 21:04:53] 2025-10-09 01:04:18,646 | INFO     | ready for new job
[2025-10-08 21:04:53] 2025-10-09 01:04:18,646 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-08 21:04:53] 2025-10-09 01:04:18,647 | INFO     | ***************************************
[2025-10-08 21:04:53] 2025-10-09 01:04:18,648 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-08 21:04:53] 2025-10-09 01:04:18,648 | INFO     | ***************************************
[2025-10-08 21:04:53] 2025-10-09 01:04:18,648 | INFO     | 
[2025-10-08 21:04:53] 2025-10-09 01:04:18,648 | INFO     | architecture information:
[2025-10-08 21:04:53] 2025-10-09 01:04:18,649 | INFO     | executing command: cat /etc/os-release
[2025-10-08 21:04:53] 2025-10-09 01:04:18,668 | INFO     | cat /etc/os-release:
[2025-10-08 21:04:53] NAME="CentOS Linux"
[2025-10-08 21:04:53] VERSION="7 (Core)"
[2025-10-08 21:04:53] ID="centos"
[2025-10-08 21:04:53] ID_LIKE="rhel fedora"
[2025-10-08 21:04:53] VERSION_ID="7"
[2025-10-08 21:04:53] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-08 21:04:53] ANSI_COLOR="0;31"
[2025-10-08 21:04:53] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-08 21:04:53] HOME_URL="https://www.centos.org/"
[2025-10-08 21:04:53] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-08 21:04:53] 
[2025-10-08 21:04:53] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-08 21:04:53] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-08 21:04:53] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-08 21:04:53] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-08 21:04:53] 
[2025-10-08 21:04:53] 2025-10-09 01:04:18,669 | INFO     | ***************************************
[2025-10-08 21:04:53] 2025-10-09 01:04:19,172 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-10-08 21:04:53] 2025-10-09 01:04:19,192 | INFO     | sufficient remaining disk space (18552455168 B)
[2025-10-08 21:04:53] 2025-10-09 01:04:19,192 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-08 21:04:53] 2025-10-09 01:04:19,192 | INFO     | current server update state: UPDATING_FINAL
[2025-10-08 21:04:53] 2025-10-09 01:04:19,192 | INFO     | update_server=False
[2025-10-08 21:04:53] 2025-10-09 01:04:19,193 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-08 21:04:53] 2025-10-09 01:04:19,193 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-08 21:04:53] 2025-10-09 01:04:19,281 | INFO     | all job control threads have been joined
[2025-10-08 21:04:53] 2025-10-09 01:04:19,374 | INFO     | all payload control threads have been joined
[2025-10-08 21:04:53] 2025-10-09 01:04:19,413 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-10-08 21:04:53] 2025-10-09 01:04:19,413 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-10-08 21:04:53] 2025-10-09 01:04:19,425 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-08 21:04:53] 2025-10-09 01:04:19,425 | INFO     | will abort loop
[2025-10-08 21:04:53] 2025-10-09 01:04:19,993 | INFO     | all data control threads have been joined
[2025-10-08 21:04:53] 2025-10-09 01:04:20,198 | INFO     | [job] retrieve thread has finished
[2025-10-08 21:04:53] 2025-10-09 01:04:20,286 | INFO     | [job] control thread has finished
[2025-10-08 21:04:53] 2025-10-09 01:04:20,378 | INFO     | [payload] control thread has finished
[2025-10-08 21:04:53] 2025-10-09 01:04:20,380 | INFO     | [job] validate thread has finished
[2025-10-08 21:04:53] 2025-10-09 01:04:20,431 | INFO     | [job] job monitor thread has finished
[2025-10-08 21:04:53] 2025-10-09 01:04:20,484 | INFO     | [payload] validate_pre thread has finished
[2025-10-08 21:04:53] 2025-10-09 01:04:20,665 | INFO     | [data] copytool_in thread has finished
[2025-10-08 21:04:53] 2025-10-09 01:04:20,712 | INFO     | [job] create_data_payload thread has finished
[2025-10-08 21:04:53] 2025-10-09 01:04:20,760 | INFO     | [payload] failed_post thread has finished
[2025-10-08 21:04:53] 2025-10-09 01:04:20,912 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-08 21:04:53] 2025-10-09 01:04:20,994 | INFO     | [data] control thread has finished
[2025-10-08 21:04:53] 2025-10-09 01:04:21,168 | INFO     | [payload] validate_post thread has finished
[2025-10-08 21:04:53] 2025-10-09 01:04:21,188 | INFO     | [payload] execute_payloads thread has finished
[2025-10-08 21:04:53] 2025-10-09 01:04:21,199 | INFO     | [data] copytool_out thread has finished
[2025-10-08 21:04:53] 2025-10-09 01:04:22,172 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-08 21:04:53] 2025-10-09 01:04:23,178 | INFO     | [job] queue monitor thread has finished
[2025-10-08 21:04:53] 2025-10-09 01:04:24,918 | INFO     | [data] queue_monitor thread has finished
[2025-10-08 21:04:53] 2025-10-09 01:04:29,728 | INFO     | job.realtimelogging is not enabled
[2025-10-08 21:04:53] 2025-10-09 01:04:30,732 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-08 21:04:53] 2025-10-09 01:04:47,684 | INFO     | [monitor] cgroup control has ended
[2025-10-08 21:04:53] 2025-10-09 01:04:48,209 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140395250272064)>', '<ExcThread(monitor, started 140394209728256)>']
[2025-10-08 21:04:53] 2025-10-09 01:04:49,189 | INFO     | PID=18983 has CPU usage=1.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-08 21:04:53] 2025-10-09 01:04:49,189 | INFO     | found 0 job(s) in 20 queues
[2025-10-08 21:04:53] 2025-10-09 01:04:49,190 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-08 21:04:53] 2025-10-09 01:04:49,190 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-08 21:04:53] 2025-10-09 01:04:49,190 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-08 21:04:53] 2025-10-09 01:04:49,190 | INFO     | [monitor] control thread has ended
[2025-10-08 21:04:53] 2025-10-09 01:04:53,225 | INFO     | all workflow threads have been joined
[2025-10-08 21:04:53] 2025-10-09 01:04:53,225 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-08 21:04:53] 2025-10-09 01:04:53,235 | INFO     | traces error code: 0
[2025-10-08 21:04:53] 2025-10-09 01:04:53,236 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-08 21:04:53] 2025-10-09 01:04:53,348 [wrapper] ==== pilot stdout END ====
[2025-10-08 21:04:53] 2025-10-09 01:04:53,353 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-08 21:04:53] 2025-10-09 01:04:53,359 [wrapper] pilotpid: 18983
[2025-10-08 21:04:53] 2025-10-09 01:04:53,364 [wrapper] Pilot exit status: 0
[2025-10-08 21:04:53] 2025-10-09 01:04:53,384 [wrapper] pandaids: 6836332691
[2025-10-08 21:04:53] 2025-10-09 01:04:53,428 [wrapper] cleanup supervisor_pilot 22159 18984
[2025-10-08 21:04:53] 2025-10-09 01:04:53,433 [wrapper] Test setup, not cleaning
[2025-10-08 21:04:53] 2025-10-09 01:04:53,438 [wrapper] apfmon messages muted
[2025-10-08 21:04:53] 2025-10-09 01:04:53,443 [wrapper] ==== wrapper stdout END ====
[2025-10-08 21:04:53] 2025-10-09 01:04:53,447 [wrapper] ==== wrapper stderr END ====
[2025-10-08 21:04:53]  *** Error codes and diagnostics ***
[2025-10-08 21:04:53]     "exeErrorCode": 0,
[2025-10-08 21:04:53]     "exeErrorDiag": "",
[2025-10-08 21:04:53]     "pilotErrorCode": 0,
[2025-10-08 21:04:53]     "pilotErrorDiag": "",
[2025-10-08 21:04:53]  *** Listing of results directory ***
[2025-10-08 21:04:53] total 413696
[2025-10-08 21:04:53] -rw-r--r-- 1 boincer umatlas    557409 Oct  8 14:44 pilot3.tar.gz
[2025-10-08 21:04:53] -rw-r--r-- 1 boincer umatlas      5112 Oct  8 14:47 queuedata.json
[2025-10-08 21:04:53] -rwx------ 1 boincer umatlas     36292 Oct  8 14:47 runpilot2-wrapper.sh
[2025-10-08 21:04:53] -rw-r--r-- 1 boincer umatlas       100 Oct  8 18:55 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-08 21:04:53] -rwxr-xr-x 1 boincer umatlas      7986 Oct  8 18:55 run_atlas
[2025-10-08 21:04:53] -rw-r--r-- 1 boincer umatlas       105 Oct  8 18:55 job.xml
[2025-10-08 21:04:53] -rw-r--r-- 2 boincer umatlas 219729564 Oct  8 18:55 EVNT.46676267._000261.pool.root.1
[2025-10-08 21:04:53] -rw-r--r-- 2 boincer umatlas     15120 Oct  8 18:55 start_atlas.sh
[2025-10-08 21:04:53] drwxrwx--x 2 boincer umatlas      4096 Oct  8 18:55 shared
[2025-10-08 21:04:53] -rw-r--r-- 2 boincer umatlas    569680 Oct  8 18:55 input.tar.gz
[2025-10-08 21:04:53] -rw-r--r-- 1 boincer umatlas         0 Oct  8 18:55 boinc_lockfile
[2025-10-08 21:04:53] -rw-r--r-- 1 boincer umatlas      2548 Oct  8 18:55 pandaJob.out
[2025-10-08 21:04:53] -rw------- 1 boincer umatlas    979306 Oct  8 18:55 agis_schedconf.cvmfs.json
[2025-10-08 21:04:53] -rw------- 1 boincer umatlas   1560401 Oct  8 18:55 agis_ddmendpoints.agis.ALL.json
[2025-10-08 21:04:53] drwx------ 5 boincer umatlas      4096 Oct  8 18:55 pilot3
[2025-10-08 21:04:53] -rw-r--r-- 1 boincer umatlas      5909 Oct  8 21:02 init_data.xml
[2025-10-08 21:04:53] -rw------- 1 boincer umatlas 197098457 Oct  8 21:03 HITS.46676269._006572.pool.root.1
[2025-10-08 21:04:53] -rw-r--r-- 1 boincer umatlas       529 Oct  8 21:03 boinc_task_state.xml
[2025-10-08 21:04:53] -rw------- 1 boincer umatlas      1048 Oct  8 21:04 memory_monitor_summary.json
[2025-10-08 21:04:53] -rw------- 1 boincer umatlas    361244 Oct  8 21:04 log.46676269._006572.job.log.tgz.1
[2025-10-08 21:04:53] -rw------- 1 boincer umatlas      7839 Oct  8 21:04 heartbeat.json
[2025-10-08 21:04:53] -rw-r--r-- 1 boincer umatlas      8192 Oct  8 21:04 boinc_mmap_file
[2025-10-08 21:04:53] -rw-r--r-- 1 boincer umatlas        27 Oct  8 21:04 wrapper_checkpoint.txt
[2025-10-08 21:04:53] -rw------- 1 boincer umatlas        95 Oct  8 21:04 pilot_heartbeat.json
[2025-10-08 21:04:53] -rw------- 1 boincer umatlas      5004 Oct  8 21:04 pilotlog.txt
[2025-10-08 21:04:53] -rw------- 1 boincer umatlas   1088510 Oct  8 21:04 log.46676269._006572.job.log.1
[2025-10-08 21:04:53] -rw------- 1 boincer umatlas       357 Oct  8 21:04 output.list
[2025-10-08 21:04:53] -rw-r--r-- 1 boincer umatlas       620 Oct  8 21:04 runtime_log
[2025-10-08 21:04:53] -rw------- 1 boincer umatlas   1464320 Oct  8 21:04 result.tar.gz
[2025-10-08 21:04:53] -rw-r--r-- 1 boincer umatlas      8703 Oct  8 21:04 runtime_log.err
[2025-10-08 21:04:53] -rw------- 1 boincer umatlas       659 Oct  8 21:04 r1GMDmUNoQ8n9Rq4apOajLDm4fhM0noT9bVof3QYDmohMMDmNPnn5n.diag
[2025-10-08 21:04:53] -rw-r--r-- 1 boincer umatlas     21152 Oct  8 21:04 stderr.txt
[2025-10-08 21:04:53] HITS file was successfully produced:
[2025-10-08 21:04:53] -rw------- 1 boincer umatlas 197098457 Oct  8 21:03 shared/HITS.pool.root.1
[2025-10-08 21:04:53]  *** Contents of shared directory: ***
[2025-10-08 21:04:53] total 409072
[2025-10-08 21:04:53] -rw-r--r-- 2 boincer umatlas 219729564 Oct  8 18:55 ATLAS.root_0
[2025-10-08 21:04:53] -rw-r--r-- 2 boincer umatlas     15120 Oct  8 18:55 start_atlas.sh
[2025-10-08 21:04:53] -rw-r--r-- 2 boincer umatlas    569680 Oct  8 18:55 input.tar.gz
[2025-10-08 21:04:53] -rw------- 1 boincer umatlas 197098457 Oct  8 21:03 HITS.pool.root.1
[2025-10-08 21:04:53] -rw------- 1 boincer umatlas   1464320 Oct  8 21:04 result.tar.gz
21:04:55 (15296): run_atlas exited; CPU time 55725.581349
21:04:55 (15296): called boinc_finish(0)

</stderr_txt>
]]>

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