Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
18:55:14 (17639): wrapper (7.7.26015): starting
18:55:14 (17639): wrapper: running run_atlas (--nthreads 12)
[2025-10-08 18:55:14] Arguments: --nthreads 12
[2025-10-08 18:55:14] Threads: 12
[2025-10-08 18:55:14] Checking for CVMFS
[2025-10-08 18:55:14] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-08 18:55:14] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-08 18:55:14] Running cvmfs_config stat atlas.cern.ch
[2025-10-08 18:55:14] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-08 18:55:14] 2.11.2.0 723 47696 83808 151488 1 1 18293247 20275200 1 130560 0 24654128 99.949 2208655 32116 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-08 18:55:14] CVMFS is ok
[2025-10-08 18:55:14] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-08 18:55:14] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-08 18:55:14] Further information can be found at the LHC@home message board.
[2025-10-08 18:55:14] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-08 18:55:14] Checking for apptainer binary...
[2025-10-08 18:55:14] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-08 18:55:14] Running /usr/bin/apptainer --version
[2025-10-08 18:55:14] apptainer version 1.3.2-1.el7
[2025-10-08 18:55:14] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-08 18:55:16] c-205-1.aglt2.org
[2025-10-08 18:55:16] apptainer works
[2025-10-08 18:55:16] Set ATHENA_PROC_NUMBER=12
[2025-10-08 18:55:16] Set ATHENA_CORE_NUMBER=12
[2025-10-08 18:55:16] Starting ATLAS job with PandaID=6836332697
[2025-10-08 18:55:16] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-08 20:07:44]  *** The last 200 lines of the pilot log: ***
[2025-10-08 20:07:44] 2025-10-09 00:06:37,991 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-08 20:07:44] 2025-10-09 00:06:37,991 | INFO     | summary of transferred files:
[2025-10-08 20:07:44] 2025-10-09 00:06:37,991 | INFO     |  -- lfn=log.46676269._006578.job.log.tgz.1, status_code=0, status=transferred
[2025-10-08 20:07:44] 2025-10-09 00:06:37,991 | INFO     | stage-out finished correctly
[2025-10-08 20:07:44] 2025-10-09 00:06:38,615 | INFO     | time since job start (4266s) is within the limit (172800.0s)
[2025-10-08 20:07:44] 2025-10-09 00:06:40,621 | INFO     | time since job start (4268s) is within the limit (172800.0s)
[2025-10-08 20:07:44] 2025-10-09 00:06:41,268 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-08 20:07:44] 2025-10-09 00:06:42,521 | WARNING  | process 27768 can no longer be monitored (due to stat problems) - aborting
[2025-10-08 20:07:44] 2025-10-09 00:06:42,521 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6836332697/memory_monitor_summary.json (trf name=prmon)
[2025-10-08 20:07:44] 2025-10-09 00:06:42,527 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6836332697/memory_monitor_summary.json (trf name=prmon)
[2025-10-08 20:07:44] 2025-10-09 00:06:42,528 | WARNING  | memory limits not set in config, using defaults: 'NoneType' object has no attribute 'get'
[2025-10-08 20:07:44] 2025-10-09 00:06:42,529 | WARNING  | maxPSS not found in memory monitor output
[2025-10-08 20:07:44] 2025-10-09 00:06:42,530 | INFO     | payload log (log.EVNTtoHITS) within allowed size limit (2147483648 B): 4118561 B
[2025-10-08 20:07:44] 2025-10-09 00:06:42,531 | INFO     | payload log (payload.stdout) within allowed size limit (2147483648 B): 15540 B
[2025-10-08 20:07:44] 2025-10-09 00:06:42,531 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-10-08 20:07:44] 2025-10-09 00:06:42,551 | INFO     | sufficient remaining disk space (29490151424 B)
[2025-10-08 20:07:44] 2025-10-09 00:06:42,552 | INFO     | work directory size check will use 2537553920 B as a max limit (10% grace limit added)
[2025-10-08 20:07:44] 2025-10-09 00:06:42,553 | INFO     | size of work directory /tmp/boinchome/slots/0/PanDA_Pilot-6836332697: 4414964 B (within 2537553920 B limit)
[2025-10-08 20:07:44] 2025-10-09 00:06:42,553 | INFO     | pfn file=/tmp/boinchome/slots/0/PanDA_Pilot-6836332697/HITS.46676269._006578.pool.root.1 does not exist (skip from workdir size calculation)
[2025-10-08 20:07:44] 2025-10-09 00:06:42,553 | INFO     | total size of present files: 0 B (workdir size: 4414964 B)
[2025-10-08 20:07:44] 2025-10-09 00:06:42,553 | INFO     | output file size check: skipping output file /tmp/boinchome/slots/0/PanDA_Pilot-6836332697/HITS.46676269._006578.pool.root.1 since it does not exist
[2025-10-08 20:07:44] 2025-10-09 00:06:42,627 | INFO     | time since job start (4270s) is within the limit (172800.0s)
[2025-10-08 20:07:44] 2025-10-09 00:06:42,634 | INFO     | job 6836332697 has state=finished
[2025-10-08 20:07:44] 2025-10-09 00:06:42,635 | INFO     | preparing for final server update for job 6836332697 in state='finished'
[2025-10-08 20:07:44] 2025-10-09 00:06:42,636 | INFO     | this job has now completed (state=finished)
[2025-10-08 20:07:44] 2025-10-09 00:06:42,636 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-08 20:07:44] 2025-10-09 00:06:42,636 | INFO     | log transfer has been attempted: DONE
[2025-10-08 20:07:44] 2025-10-09 00:06:42,636 | INFO     | job 6836332697 has finished - writing final server update
[2025-10-08 20:07:44] 2025-10-09 00:06:42,637 | INFO     | total number of processed events: 400 (read)
[2025-10-08 20:07:44] 2025-10-09 00:06:42,638 | INFO     | executing command: lscpu
[2025-10-08 20:07:44] 2025-10-09 00:06:42,656 | INFO     | number of running child processes to parent process 27768: 1
[2025-10-08 20:07:44] 2025-10-09 00:06:42,657 | INFO     | maximum number of monitored processes: 6
[2025-10-08 20:07:44] 2025-10-09 00:06:42,664 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-08 20:07:44] 2025-10-09 00:06:44,632 | INFO     | time since job start (4272s) is within the limit (172800.0s)
[2025-10-08 20:07:44] 2025-10-09 00:06:45,160 | INFO     | monitor loop #318: job 0:6836332697 is in state 'finished'
[2025-10-08 20:07:44] 2025-10-09 00:06:45,160 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-08 20:07:44] 2025-10-09 00:06:46,638 | INFO     | time since job start (4274s) is within the limit (172800.0s)
[2025-10-08 20:07:44] 2025-10-09 00:06:47,355 | INFO     | CPU arch script returned: x86-64-v2
[2025-10-08 20:07:44] 2025-10-09 00:06:47,358 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1717.9166666666667
[2025-10-08 20:07:44] 2025-10-09 00:06:47,360 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6836332697/memory_monitor_summary.json (trf name=prmon)
[2025-10-08 20:07:44] 2025-10-09 00:06:47,361 | INFO     | extracted standard info from prmon json
[2025-10-08 20:07:44] 2025-10-09 00:06:47,361 | INFO     | extracted standard memory fields from prmon json
[2025-10-08 20:07:44] 2025-10-09 00:06:47,361 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-08 20:07:44] 2025-10-09 00:06:47,361 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-08 20:07:44] 2025-10-09 00:06:47,361 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-08 20:07:44] 2025-10-09 00:06:47,363 | INFO     | fitting pss+swap vs Time
[2025-10-08 20:07:44] 2025-10-09 00:06:47,363 | INFO     | sum of square deviations: 77515872.0
[2025-10-08 20:07:44] 2025-10-09 00:06:47,363 | INFO     | sum of deviations: -4356216668.0
[2025-10-08 20:07:44] 2025-10-09 00:06:47,364 | INFO     | mean x: 1759966357.0
[2025-10-08 20:07:44] 2025-10-09 00:06:47,364 | INFO     | mean y: 2720050.5714285714
[2025-10-08 20:07:44] 2025-10-09 00:06:47,364 | INFO     | -- intersect: 98908848326.88933
[2025-10-08 20:07:44] 2025-10-09 00:06:47,364 | INFO     | intersect: 98908848326.88933
[2025-10-08 20:07:44] 2025-10-09 00:06:47,364 | INFO     | chi2: 0.05121772166331484
[2025-10-08 20:07:44] 2025-10-09 00:06:47,364 | INFO     | -- intersect: 98908848326.88933
[2025-10-08 20:07:44] 2025-10-09 00:06:47,364 | INFO     | current memory leak: -56.20 B/s (using 63 data points, chi2=0.05)
[2025-10-08 20:07:44] 2025-10-09 00:06:47,365 | INFO     | could have reported an average CPU frequency of 2041 MHz (6 samples)
[2025-10-08 20:07:44] 2025-10-09 00:06:47,365 | INFO     | ..............................
[2025-10-08 20:07:44] 2025-10-09 00:06:47,365 | INFO     | . Timing measurements:
[2025-10-08 20:07:44] 2025-10-09 00:06:47,365 | INFO     | . get job = 0 s
[2025-10-08 20:07:44] 2025-10-09 00:06:47,365 | INFO     | . initial setup = 2 s
[2025-10-08 20:07:44] 2025-10-09 00:06:47,365 | INFO     | . payload setup = 7 s
[2025-10-08 20:07:44] 2025-10-09 00:06:47,365 | INFO     | . stage-in = 0 s
[2025-10-08 20:07:44] 2025-10-09 00:06:47,366 | INFO     | . payload execution = 4236 s
[2025-10-08 20:07:44] 2025-10-09 00:06:47,366 | INFO     | . stage-out = 0 s
[2025-10-08 20:07:44] 2025-10-09 00:06:47,366 | INFO     | . log creation = 0 s
[2025-10-08 20:07:44] 2025-10-09 00:06:47,366 | INFO     | ..............................
[2025-10-08 20:07:44] 2025-10-09 00:06:47,451 | INFO     | 
[2025-10-08 20:07:44] 2025-10-09 00:06:47,451 | INFO     | job summary report
[2025-10-08 20:07:44] 2025-10-09 00:06:47,451 | INFO     | --------------------------------------------------
[2025-10-08 20:07:44] 2025-10-09 00:06:47,451 | INFO     | PanDA job id: 6836332697
[2025-10-08 20:07:44] 2025-10-09 00:06:47,451 | INFO     | task id: 46676269
[2025-10-08 20:07:44] 2025-10-09 00:06:47,452 | INFO     | errors: (none)
[2025-10-08 20:07:44] 2025-10-09 00:06:47,452 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-08 20:07:44] 2025-10-09 00:06:47,452 | INFO     | pilot state: finished 
[2025-10-08 20:07:44] 2025-10-09 00:06:47,452 | INFO     | transexitcode: 0
[2025-10-08 20:07:44] 2025-10-09 00:06:47,452 | INFO     | exeerrorcode: 0
[2025-10-08 20:07:44] 2025-10-09 00:06:47,452 | INFO     | exeerrordiag: 
[2025-10-08 20:07:44] 2025-10-09 00:06:47,453 | INFO     | exitcode: 0
[2025-10-08 20:07:44] 2025-10-09 00:06:47,453 | INFO     | exitmsg: OK
[2025-10-08 20:07:44] 2025-10-09 00:06:47,453 | INFO     | cpuconsumptiontime: 46356 s
[2025-10-08 20:07:44] 2025-10-09 00:06:47,453 | INFO     | nevents: 400
[2025-10-08 20:07:44] 2025-10-09 00:06:47,453 | INFO     | neventsw: 0
[2025-10-08 20:07:44] 2025-10-09 00:06:47,453 | INFO     | pid: 27768
[2025-10-08 20:07:44] 2025-10-09 00:06:47,454 | INFO     | pgrp: 27768
[2025-10-08 20:07:44] 2025-10-09 00:06:47,454 | INFO     | corecount: 12
[2025-10-08 20:07:44] 2025-10-09 00:06:47,454 | INFO     | event service: False
[2025-10-08 20:07:44] 2025-10-09 00:06:47,454 | INFO     | sizes: {0: 2348852, 5: 2349114, 11: 2349170, 4247: 2375063, 4249: 2384061, 4252: 2384117, 4259: 2384563}
[2025-10-08 20:07:44] 2025-10-09 00:06:47,454 | INFO     | --------------------------------------------------
[2025-10-08 20:07:44] 2025-10-09 00:06:47,454 | INFO     | 
[2025-10-08 20:07:44] 2025-10-09 00:06:47,455 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-10-08 20:07:44] 2025-10-09 00:06:47,479 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-08 20:07:44] 2025-10-09 00:06:47,479 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-08 20:07:44] 2025-10-09 00:06:47,480 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-08 20:07:44] 2025-10-09 00:06:47,480 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-08 20:07:44] 2025-10-09 00:06:47,480 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-08 20:07:44] 2025-10-09 00:06:47,480 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-08 20:07:44] 2025-10-09 00:06:47,480 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-08 20:07:44] 2025-10-09 00:06:47,480 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-08 20:07:44] 2025-10-09 00:06:47,481 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-08 20:07:44] 2025-10-09 00:06:47,481 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-08 20:07:44] 2025-10-09 00:06:47,481 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-08 20:07:44] 2025-10-09 00:06:47,481 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-08 20:07:44] 2025-10-09 00:06:47,481 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-08 20:07:44] 2025-10-09 00:06:47,481 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-08 20:07:44] 2025-10-09 00:06:47,482 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-08 20:07:44] 2025-10-09 00:06:47,482 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-08 20:07:44] 2025-10-09 00:06:47,482 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-08 20:07:44] 2025-10-09 00:06:47,482 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-08 20:07:44] 2025-10-09 00:06:47,482 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-08 20:07:44] 2025-10-09 00:06:47,482 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-08 20:07:44] 2025-10-09 00:06:47,483 | INFO     | job 6836332697 has completed (purged errors)
[2025-10-08 20:07:44] 2025-10-09 00:06:47,483 | INFO     | overall cleanup function is called
[2025-10-08 20:07:44] 2025-10-09 00:06:48,491 | INFO     | --- collectZombieJob: --- 10, [27768]
[2025-10-08 20:07:44] 2025-10-09 00:06:48,491 | INFO     | zombie collector waiting for pid 27768
[2025-10-08 20:07:44] 2025-10-09 00:06:48,491 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-08 20:07:44] 2025-10-09 00:06:48,492 | INFO     | collected zombie processes
[2025-10-08 20:07:44] 2025-10-09 00:06:48,492 | INFO     | will attempt to kill all subprocesses of pid=27768
[2025-10-08 20:07:44] 2025-10-09 00:06:48,581 | INFO     | process IDs to be killed: [27768] (in reverse order)
[2025-10-08 20:07:44] 2025-10-09 00:06:48,631 | WARNING  | found no corresponding commands to process id(s)
[2025-10-08 20:07:44] 2025-10-09 00:06:48,632 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-08 20:07:44] 2025-10-09 00:06:48,636 | INFO     | did not find any defunct processes belonging to 27768
[2025-10-08 20:07:44] 2025-10-09 00:06:48,638 | INFO     | did not find any defunct processes belonging to 27768
[2025-10-08 20:07:44] 2025-10-09 00:06:48,638 | INFO     | ready for new job
[2025-10-08 20:07:44] 2025-10-09 00:06:48,638 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-08 20:07:44] 2025-10-09 00:06:48,640 | INFO     | ***************************************
[2025-10-08 20:07:44] 2025-10-09 00:06:48,640 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-08 20:07:44] 2025-10-09 00:06:48,640 | INFO     | ***************************************
[2025-10-08 20:07:44] 2025-10-09 00:06:48,640 | INFO     | 
[2025-10-08 20:07:44] 2025-10-09 00:06:48,641 | INFO     | architecture information:
[2025-10-08 20:07:44] 2025-10-09 00:06:48,641 | INFO     | executing command: cat /etc/os-release
[2025-10-08 20:07:44] 2025-10-09 00:06:48,657 | INFO     | cat /etc/os-release:
[2025-10-08 20:07:44] NAME="CentOS Linux"
[2025-10-08 20:07:44] VERSION="7 (Core)"
[2025-10-08 20:07:44] ID="centos"
[2025-10-08 20:07:44] ID_LIKE="rhel fedora"
[2025-10-08 20:07:44] VERSION_ID="7"
[2025-10-08 20:07:44] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-08 20:07:44] ANSI_COLOR="0;31"
[2025-10-08 20:07:44] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-08 20:07:44] HOME_URL="https://www.centos.org/"
[2025-10-08 20:07:44] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-08 20:07:44] 
[2025-10-08 20:07:44] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-08 20:07:44] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-08 20:07:44] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-08 20:07:44] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-08 20:07:44] 
[2025-10-08 20:07:44] 2025-10-09 00:06:48,658 | INFO     | ***************************************
[2025-10-08 20:07:44] 2025-10-09 00:06:49,161 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-10-08 20:07:44] 2025-10-09 00:06:49,178 | INFO     | sufficient remaining disk space (29495394304 B)
[2025-10-08 20:07:44] 2025-10-09 00:06:49,178 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-08 20:07:44] 2025-10-09 00:06:49,179 | INFO     | current server update state: UPDATING_FINAL
[2025-10-08 20:07:44] 2025-10-09 00:06:49,179 | INFO     | update_server=False
[2025-10-08 20:07:44] 2025-10-09 00:06:49,179 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-08 20:07:44] 2025-10-09 00:06:49,179 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-08 20:07:44] 2025-10-09 00:06:49,180 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-08 20:07:44] 2025-10-09 00:06:49,180 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-08 20:07:44] 2025-10-09 00:06:49,180 | INFO     | aborting loop
[2025-10-08 20:07:44] 2025-10-09 00:06:50,070 | INFO     | all job control threads have been joined
[2025-10-08 20:07:44] 2025-10-09 00:06:50,163 | INFO     | all data control threads have been joined
[2025-10-08 20:07:44] 2025-10-09 00:06:50,185 | INFO     | [job] retrieve thread has finished
[2025-10-08 20:07:44] 2025-10-09 00:06:50,185 | INFO     | [job] queue monitor thread has finished
[2025-10-08 20:07:44] 2025-10-09 00:06:50,186 | INFO     | [job] job monitor thread has finished
[2025-10-08 20:07:44] 2025-10-09 00:06:50,447 | INFO     | [payload] execute_payloads thread has finished
[2025-10-08 20:07:44] 2025-10-09 00:06:50,570 | INFO     | all payload control threads have been joined
[2025-10-08 20:07:44] 2025-10-09 00:06:50,593 | INFO     | [payload] failed_post thread has finished
[2025-10-08 20:07:44] 2025-10-09 00:06:50,754 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-08 20:07:44] 2025-10-09 00:06:51,075 | INFO     | [job] control thread has finished
[2025-10-08 20:07:44] 2025-10-09 00:06:51,147 | INFO     | [data] copytool_in thread has finished
[2025-10-08 20:07:44] 2025-10-09 00:06:51,169 | INFO     | [data] control thread has finished
[2025-10-08 20:07:44] 2025-10-09 00:06:51,186 | INFO     | [data] copytool_out thread has finished
[2025-10-08 20:07:44] 2025-10-09 00:06:51,446 | INFO     | [payload] validate_post thread has finished
[2025-10-08 20:07:44] 2025-10-09 00:06:51,562 | INFO     | [job] validate thread has finished
[2025-10-08 20:07:44] 2025-10-09 00:06:51,575 | INFO     | [payload] control thread has finished
[2025-10-08 20:07:44] 2025-10-09 00:06:51,668 | INFO     | [job] create_data_payload thread has finished
[2025-10-08 20:07:44] 2025-10-09 00:06:51,680 | INFO     | [payload] validate_pre thread has finished
[2025-10-08 20:07:44] 2025-10-09 00:06:51,859 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-08 20:07:44] 2025-10-09 00:06:55,865 | INFO     | [data] queue_monitor thread has finished
[2025-10-08 20:07:44] 2025-10-09 00:07:19,834 | INFO     | PID=21324 has CPU usage=3.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-08 20:07:44] 2025-10-09 00:07:19,834 | INFO     | found 0 job(s) in 20 queues
[2025-10-08 20:07:44] 2025-10-09 00:07:19,834 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-08 20:07:44] 2025-10-09 00:07:19,834 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-08 20:07:44] 2025-10-09 00:07:38,747 | INFO     | [monitor] cgroup control has ended
[2025-10-08 20:07:44] 2025-10-09 00:07:38,796 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140190710110016)>', '<ExcThread(monitor, started 140190131672832)>']
[2025-10-08 20:07:44] 2025-10-09 00:07:38,926 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-08 20:07:44] 2025-10-09 00:07:38,926 | INFO     | [monitor] control thread has ended
[2025-10-08 20:07:44] 2025-10-09 00:07:43,822 | INFO     | all workflow threads have been joined
[2025-10-08 20:07:44] 2025-10-09 00:07:43,822 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-08 20:07:44] 2025-10-09 00:07:43,822 | INFO     | traces error code: 0
[2025-10-08 20:07:44] 2025-10-09 00:07:43,823 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-08 20:07:44] 2025-10-09 00:07:43,916 [wrapper] ==== pilot stdout END ====
[2025-10-08 20:07:44] 2025-10-09 00:07:43,920 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-08 20:07:44] 2025-10-09 00:07:43,924 [wrapper] pilotpid: 21324
[2025-10-08 20:07:44] 2025-10-09 00:07:43,928 [wrapper] Pilot exit status: 0
[2025-10-08 20:07:44] 2025-10-09 00:07:43,945 [wrapper] pandaids: 6836332697
[2025-10-08 20:07:44] 2025-10-09 00:07:43,994 [wrapper] cleanup supervisor_pilot 13052 21325
[2025-10-08 20:07:44] 2025-10-09 00:07:43,998 [wrapper] Test setup, not cleaning
[2025-10-08 20:07:44] 2025-10-09 00:07:44,002 [wrapper] apfmon messages muted
[2025-10-08 20:07:44] 2025-10-09 00:07:44,006 [wrapper] ==== wrapper stdout END ====
[2025-10-08 20:07:44] 2025-10-09 00:07:44,010 [wrapper] ==== wrapper stderr END ====
[2025-10-08 20:07:44]  *** Error codes and diagnostics ***
[2025-10-08 20:07:44]     "exeErrorCode": 0,
[2025-10-08 20:07:44]     "exeErrorDiag": "",
[2025-10-08 20:07:44]     "pilotErrorCode": 0,
[2025-10-08 20:07:44]     "pilotErrorDiag": "",
[2025-10-08 20:07:44]  *** Listing of results directory ***
[2025-10-08 20:07:44] total 405100
[2025-10-08 20:07:44] -rw-r--r-- 1 boincer umatlas    557409 Oct  8 14:44 pilot3.tar.gz
[2025-10-08 20:07:44] -rw-r--r-- 1 boincer umatlas      5112 Oct  8 14:47 queuedata.json
[2025-10-08 20:07:44] -rwx------ 1 boincer umatlas     36292 Oct  8 14:47 runpilot2-wrapper.sh
[2025-10-08 20:07:44] -rw-r--r-- 1 boincer umatlas       100 Oct  8 18:55 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-08 20:07:44] -rwxr-xr-x 1 boincer umatlas      7986 Oct  8 18:55 run_atlas
[2025-10-08 20:07:44] -rw-r--r-- 1 boincer umatlas       105 Oct  8 18:55 job.xml
[2025-10-08 20:07:44] -rw-r--r-- 2 boincer umatlas 219729564 Oct  8 18:55 EVNT.46676267._000261.pool.root.1
[2025-10-08 20:07:44] -rw-r--r-- 2 boincer umatlas     15120 Oct  8 18:55 start_atlas.sh
[2025-10-08 20:07:44] drwxrwx--x 2 boincer umatlas      4096 Oct  8 18:55 shared
[2025-10-08 20:07:44] -rw-r--r-- 2 boincer umatlas    569679 Oct  8 18:55 input.tar.gz
[2025-10-08 20:07:44] -rw-r--r-- 1 boincer umatlas         0 Oct  8 18:55 boinc_lockfile
[2025-10-08 20:07:44] -rw-r--r-- 1 boincer umatlas      2548 Oct  8 18:55 pandaJob.out
[2025-10-08 20:07:44] -rw------- 1 boincer umatlas    979306 Oct  8 18:55 agis_schedconf.cvmfs.json
[2025-10-08 20:07:44] -rw------- 1 boincer umatlas   1560401 Oct  8 18:55 agis_ddmendpoints.agis.ALL.json
[2025-10-08 20:07:44] drwx------ 5 boincer umatlas      4096 Oct  8 18:55 pilot3
[2025-10-08 20:07:44] -rw-r--r-- 1 boincer umatlas      5952 Oct  8 20:04 init_data.xml
[2025-10-08 20:07:44] -rw------- 1 boincer umatlas 189185678 Oct  8 20:06 HITS.46676269._006578.pool.root.1
[2025-10-08 20:07:44] -rw-r--r-- 1 boincer umatlas       530 Oct  8 20:06 boinc_task_state.xml
[2025-10-08 20:07:44] -rw------- 1 boincer umatlas        95 Oct  8 20:06 pilot_heartbeat.json
[2025-10-08 20:07:44] -rw------- 1 boincer umatlas      1043 Oct  8 20:06 memory_monitor_summary.json
[2025-10-08 20:07:44] -rw------- 1 boincer umatlas    378522 Oct  8 20:06 log.46676269._006578.job.log.tgz.1
[2025-10-08 20:07:44] -rw------- 1 boincer umatlas      7847 Oct  8 20:06 heartbeat.json
[2025-10-08 20:07:44] -rw-r--r-- 1 boincer umatlas      8192 Oct  8 20:07 boinc_mmap_file
[2025-10-08 20:07:44] -rw-r--r-- 1 boincer umatlas        27 Oct  8 20:07 wrapper_checkpoint.txt
[2025-10-08 20:07:44] -rw------- 1 boincer umatlas      4746 Oct  8 20:07 pilotlog.txt
[2025-10-08 20:07:44] -rw------- 1 boincer umatlas    623146 Oct  8 20:07 log.46676269._006578.job.log.1
[2025-10-08 20:07:44] -rw------- 1 boincer umatlas       357 Oct  8 20:07 output.list
[2025-10-08 20:07:44] -rw-r--r-- 1 boincer umatlas       620 Oct  8 20:07 runtime_log
[2025-10-08 20:07:44] -rw------- 1 boincer umatlas   1024000 Oct  8 20:07 result.tar.gz
[2025-10-08 20:07:44] -rw-r--r-- 1 boincer umatlas      8700 Oct  8 20:07 runtime_log.err
[2025-10-08 20:07:44] -rw------- 1 boincer umatlas       658 Oct  8 20:07 1vOMDmUNoQ8n9Rq4apOajLDm4fhM0noT9bVof3QYDmuhMMDmFLO7Xo.diag
[2025-10-08 20:07:44] -rw-r--r-- 1 boincer umatlas     22416 Oct  8 20:07 stderr.txt
[2025-10-08 20:07:44] HITS file was successfully produced:
[2025-10-08 20:07:44] -rw------- 1 boincer umatlas 189185678 Oct  8 20:06 shared/HITS.pool.root.1
[2025-10-08 20:07:44]  *** Contents of shared directory: ***
[2025-10-08 20:07:44] total 400912
[2025-10-08 20:07:44] -rw-r--r-- 2 boincer umatlas 219729564 Oct  8 18:55 ATLAS.root_0
[2025-10-08 20:07:44] -rw-r--r-- 2 boincer umatlas     15120 Oct  8 18:55 start_atlas.sh
[2025-10-08 20:07:44] -rw-r--r-- 2 boincer umatlas    569679 Oct  8 18:55 input.tar.gz
[2025-10-08 20:07:44] -rw------- 1 boincer umatlas 189185678 Oct  8 20:06 HITS.pool.root.1
[2025-10-08 20:07:44] -rw------- 1 boincer umatlas   1024000 Oct  8 20:07 result.tar.gz
20:07:45 (17639): run_atlas exited; CPU time 46329.550453
20:07:45 (17639): called boinc_finish(0)

</stderr_txt>
]]>

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