Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
18:55:14 (25798): wrapper (7.7.26015): starting
18:55:14 (25798): wrapper: running run_atlas (--nthreads 12)
[2025-10-08 18:55:14] Arguments: --nthreads 12
[2025-10-08 18:55:14] Threads: 12
[2025-10-08 18:55:14] Checking for CVMFS
[2025-10-08 18:55:14] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-08 18:55:14] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-08 18:55:14] Running cvmfs_config stat atlas.cern.ch
[2025-10-08 18:55:14] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-08 18:55:14] 2.11.2.0 2945 217749 99148 151488 1 1 10496122 20275201 1 130560 2 104705791 99.984 13242361 12654 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-08 18:55:14] CVMFS is ok
[2025-10-08 18:55:14] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-08 18:55:14] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-08 18:55:14] Further information can be found at the LHC@home message board.
[2025-10-08 18:55:14] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-08 18:55:14] Checking for apptainer binary...
[2025-10-08 18:55:14] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-08 18:55:14] Running /usr/bin/apptainer --version
[2025-10-08 18:55:14] apptainer version 1.3.2-1.el7
[2025-10-08 18:55:14] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-08 18:55:16] c-205-2.aglt2.org
[2025-10-08 18:55:16] apptainer works
[2025-10-08 18:55:16] Set ATHENA_PROC_NUMBER=12
[2025-10-08 18:55:16] Set ATHENA_CORE_NUMBER=12
[2025-10-08 18:55:16] Starting ATLAS job with PandaID=6836332681
[2025-10-08 18:55:16] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-08 20:05:05]  *** The last 200 lines of the pilot log: ***
[2025-10-08 20:05:05]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-10-08 20:05:05]  replicas=None
[2025-10-08 20:05:05]  scope=mc23_13p6TeV
[2025-10-08 20:05:05]  status=None
[2025-10-08 20:05:05]  status_code=0
[2025-10-08 20:05:05]  storage_token=
[2025-10-08 20:05:05]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6836332681/log.46676269._006562.job.log.tgz.1
[2025-10-08 20:05:05]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/96/7a/log.46676269._006562.job.log.tgz.1
[2025-10-08 20:05:05]  workdir=None
[2025-10-08 20:05:05] ]
[2025-10-08 20:05:05] 2025-10-09 00:04:27,096 | INFO     | transferring file log.46676269._006562.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6836332681/log.46676269._006562.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-10-08 20:05:05] 2025-10-09 00:04:27,096 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6836332681/log.46676269._006562.job.log.tgz.1 /tmp/boinchome/slots/0/log.46676269._006562.job
[2025-10-08 20:05:05] 2025-10-09 00:04:27,119 | INFO     | adding to output.list: log.46676269._006562.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/96/7a/log.46676269._006562.job.log.tg
[2025-10-08 20:05:05] 2025-10-09 00:04:27,120 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-08 20:05:05] 2025-10-09 00:04:27,120 | INFO     | summary of transferred files:
[2025-10-08 20:05:05] 2025-10-09 00:04:27,120 | INFO     |  -- lfn=log.46676269._006562.job.log.tgz.1, status_code=0, status=transferred
[2025-10-08 20:05:05] 2025-10-09 00:04:27,120 | INFO     | stage-out finished correctly
[2025-10-08 20:05:05] 2025-10-09 00:04:28,356 | INFO     | time since job start (4137s) is within the limit (172800.0s)
[2025-10-08 20:05:05] 2025-10-09 00:04:28,356 | INFO     | 4139s have passed since pilot start - server update state is 'RUNNING'
[2025-10-08 20:05:05] 2025-10-09 00:04:29,392 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-08 20:05:05] 2025-10-09 00:04:29,475 | INFO     | job 6836332681 has state=finished
[2025-10-08 20:05:05] 2025-10-09 00:04:29,475 | INFO     | preparing for final server update for job 6836332681 in state='finished'
[2025-10-08 20:05:05] 2025-10-09 00:04:29,475 | INFO     | this job has now completed (state=finished)
[2025-10-08 20:05:05] 2025-10-09 00:04:29,475 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-08 20:05:05] 2025-10-09 00:04:29,476 | INFO     | log transfer has been attempted: DONE
[2025-10-08 20:05:05] 2025-10-09 00:04:29,477 | INFO     | job 6836332681 has finished - writing final server update
[2025-10-08 20:05:05] 2025-10-09 00:04:29,477 | INFO     | total number of processed events: 400 (read)
[2025-10-08 20:05:05] 2025-10-09 00:04:29,478 | INFO     | executing command: lscpu
[2025-10-08 20:05:05] 2025-10-09 00:04:29,504 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-08 20:05:05] 2025-10-09 00:04:29,582 | WARNING  | process 3559 can no longer be monitored (due to stat problems) - aborting
[2025-10-08 20:05:05] 2025-10-09 00:04:29,582 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6836332681/memory_monitor_summary.json (trf name=prmon)
[2025-10-08 20:05:05] 2025-10-09 00:04:29,673 | INFO     | number of running child processes to parent process 3559: 1
[2025-10-08 20:05:05] 2025-10-09 00:04:29,673 | INFO     | maximum number of monitored processes: 6
[2025-10-08 20:05:05] 2025-10-09 00:04:30,362 | INFO     | time since job start (4139s) is within the limit (172800.0s)
[2025-10-08 20:05:05] 2025-10-09 00:04:32,177 | INFO     | monitor loop #308: job 0:6836332681 is in state 'finished'
[2025-10-08 20:05:05] 2025-10-09 00:04:32,177 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-08 20:05:05] 2025-10-09 00:04:32,365 | INFO     | time since job start (4141s) is within the limit (172800.0s)
[2025-10-08 20:05:05] 2025-10-09 00:04:34,211 | INFO     | CPU arch script returned: x86-64-v2
[2025-10-08 20:05:05] 2025-10-09 00:04:34,215 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1718.0
[2025-10-08 20:05:05] 2025-10-09 00:04:34,218 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6836332681/memory_monitor_summary.json (trf name=prmon)
[2025-10-08 20:05:05] 2025-10-09 00:04:34,219 | INFO     | extracted standard info from prmon json
[2025-10-08 20:05:05] 2025-10-09 00:04:34,219 | INFO     | extracted standard memory fields from prmon json
[2025-10-08 20:05:05] 2025-10-09 00:04:34,219 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-08 20:05:05] 2025-10-09 00:04:34,219 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-08 20:05:05] 2025-10-09 00:04:34,220 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-08 20:05:05] 2025-10-09 00:04:34,221 | INFO     | fitting pss+swap vs Time
[2025-10-08 20:05:05] 2025-10-09 00:04:34,221 | INFO     | sum of square deviations: 70364110.0
[2025-10-08 20:05:05] 2025-10-09 00:04:34,221 | INFO     | sum of deviations: -5530299100.999999
[2025-10-08 20:05:05] 2025-10-09 00:04:34,222 | INFO     | mean x: 1759966296.0
[2025-10-08 20:05:05] 2025-10-09 00:04:34,222 | INFO     | mean y: 2736170.62295082
[2025-10-08 20:05:05] 2025-10-09 00:04:34,222 | INFO     | -- intersect: 138328084484.68674
[2025-10-08 20:05:05] 2025-10-09 00:04:34,222 | INFO     | intersect: 138328084484.68674
[2025-10-08 20:05:05] 2025-10-09 00:04:34,222 | INFO     | chi2: 0.05385831541321489
[2025-10-08 20:05:05] 2025-10-09 00:04:34,222 | INFO     | -- intersect: 138328084484.68674
[2025-10-08 20:05:05] 2025-10-09 00:04:34,222 | INFO     | current memory leak: -78.60 B/s (using 61 data points, chi2=0.05)
[2025-10-08 20:05:05] 2025-10-09 00:04:34,223 | INFO     | could have reported an average CPU frequency of 2043 MHz (6 samples)
[2025-10-08 20:05:05] 2025-10-09 00:04:34,223 | INFO     | ..............................
[2025-10-08 20:05:05] 2025-10-09 00:04:34,223 | INFO     | . Timing measurements:
[2025-10-08 20:05:05] 2025-10-09 00:04:34,223 | INFO     | . get job = 0 s
[2025-10-08 20:05:05] 2025-10-09 00:04:34,223 | INFO     | . initial setup = 2 s
[2025-10-08 20:05:05] 2025-10-09 00:04:34,223 | INFO     | . payload setup = 7 s
[2025-10-08 20:05:05] 2025-10-09 00:04:34,223 | INFO     | . stage-in = 0 s
[2025-10-08 20:05:05] 2025-10-09 00:04:34,223 | INFO     | . payload execution = 4107 s
[2025-10-08 20:05:05] 2025-10-09 00:04:34,224 | INFO     | . stage-out = 0 s
[2025-10-08 20:05:05] 2025-10-09 00:04:34,224 | INFO     | . log creation = 0 s
[2025-10-08 20:05:05] 2025-10-09 00:04:34,224 | INFO     | ..............................
[2025-10-08 20:05:05] 2025-10-09 00:04:34,306 | INFO     | 
[2025-10-08 20:05:05] 2025-10-09 00:04:34,306 | INFO     | job summary report
[2025-10-08 20:05:05] 2025-10-09 00:04:34,306 | INFO     | --------------------------------------------------
[2025-10-08 20:05:05] 2025-10-09 00:04:34,307 | INFO     | PanDA job id: 6836332681
[2025-10-08 20:05:05] 2025-10-09 00:04:34,307 | INFO     | task id: 46676269
[2025-10-08 20:05:05] 2025-10-09 00:04:34,307 | INFO     | errors: (none)
[2025-10-08 20:05:05] 2025-10-09 00:04:34,307 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-08 20:05:05] 2025-10-09 00:04:34,307 | INFO     | pilot state: finished 
[2025-10-08 20:05:05] 2025-10-09 00:04:34,307 | INFO     | transexitcode: 0
[2025-10-08 20:05:05] 2025-10-09 00:04:34,308 | INFO     | exeerrorcode: 0
[2025-10-08 20:05:05] 2025-10-09 00:04:34,308 | INFO     | exeerrordiag: 
[2025-10-08 20:05:05] 2025-10-09 00:04:34,308 | INFO     | exitcode: 0
[2025-10-08 20:05:05] 2025-10-09 00:04:34,308 | INFO     | exitmsg: OK
[2025-10-08 20:05:05] 2025-10-09 00:04:34,308 | INFO     | cpuconsumptiontime: 44352 s
[2025-10-08 20:05:05] 2025-10-09 00:04:34,308 | INFO     | nevents: 400
[2025-10-08 20:05:05] 2025-10-09 00:04:34,309 | INFO     | neventsw: 0
[2025-10-08 20:05:05] 2025-10-09 00:04:34,309 | INFO     | pid: 3559
[2025-10-08 20:05:05] 2025-10-09 00:04:34,309 | INFO     | pgrp: 3559
[2025-10-08 20:05:05] 2025-10-09 00:04:34,309 | INFO     | corecount: 12
[2025-10-08 20:05:05] 2025-10-09 00:04:34,309 | INFO     | event service: False
[2025-10-08 20:05:05] 2025-10-09 00:04:34,309 | INFO     | sizes: {0: 2348681, 1: 2348880, 6: 2349142, 11: 2349170, 4118: 2375062, 4119: 2384060, 4122: 2384244, 4126: 2384438}
[2025-10-08 20:05:05] 2025-10-09 00:04:34,309 | INFO     | --------------------------------------------------
[2025-10-08 20:05:05] 2025-10-09 00:04:34,309 | INFO     | 
[2025-10-08 20:05:05] 2025-10-09 00:04:34,309 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-10-08 20:05:05] 2025-10-09 00:04:34,333 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-08 20:05:05] 2025-10-09 00:04:34,333 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-08 20:05:05] 2025-10-09 00:04:34,333 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-08 20:05:05] 2025-10-09 00:04:34,333 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-08 20:05:05] 2025-10-09 00:04:34,334 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-08 20:05:05] 2025-10-09 00:04:34,334 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-08 20:05:05] 2025-10-09 00:04:34,334 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-08 20:05:05] 2025-10-09 00:04:34,334 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-08 20:05:05] 2025-10-09 00:04:34,334 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-08 20:05:05] 2025-10-09 00:04:34,334 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-08 20:05:05] 2025-10-09 00:04:34,335 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-08 20:05:05] 2025-10-09 00:04:34,335 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-08 20:05:05] 2025-10-09 00:04:34,335 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-08 20:05:05] 2025-10-09 00:04:34,335 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-08 20:05:05] 2025-10-09 00:04:34,335 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-08 20:05:05] 2025-10-09 00:04:34,335 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-08 20:05:05] 2025-10-09 00:04:34,336 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-08 20:05:05] 2025-10-09 00:04:34,336 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-08 20:05:05] 2025-10-09 00:04:34,336 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-08 20:05:05] 2025-10-09 00:04:34,336 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-08 20:05:05] 2025-10-09 00:04:34,336 | INFO     | job 6836332681 has completed (purged errors)
[2025-10-08 20:05:05] 2025-10-09 00:04:34,337 | INFO     | overall cleanup function is called
[2025-10-08 20:05:05] 2025-10-09 00:04:35,343 | INFO     | --- collectZombieJob: --- 10, [3559]
[2025-10-08 20:05:05] 2025-10-09 00:04:35,343 | INFO     | zombie collector waiting for pid 3559
[2025-10-08 20:05:05] 2025-10-09 00:04:35,352 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-08 20:05:05] 2025-10-09 00:04:35,352 | INFO     | collected zombie processes
[2025-10-08 20:05:05] 2025-10-09 00:04:35,352 | INFO     | will attempt to kill all subprocesses of pid=3559
[2025-10-08 20:05:05] 2025-10-09 00:04:35,444 | INFO     | process IDs to be killed: [3559] (in reverse order)
[2025-10-08 20:05:05] 2025-10-09 00:04:35,504 | WARNING  | found no corresponding commands to process id(s)
[2025-10-08 20:05:05] 2025-10-09 00:04:35,504 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-08 20:05:05] 2025-10-09 00:04:35,508 | INFO     | did not find any defunct processes belonging to 3559
[2025-10-08 20:05:05] 2025-10-09 00:04:35,511 | INFO     | did not find any defunct processes belonging to 3559
[2025-10-08 20:05:05] 2025-10-09 00:04:35,511 | INFO     | ready for new job
[2025-10-08 20:05:05] 2025-10-09 00:04:35,511 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-08 20:05:05] 2025-10-09 00:04:35,513 | INFO     | ***************************************
[2025-10-08 20:05:05] 2025-10-09 00:04:35,513 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-08 20:05:05] 2025-10-09 00:04:35,513 | INFO     | ***************************************
[2025-10-08 20:05:05] 2025-10-09 00:04:35,513 | INFO     | 
[2025-10-08 20:05:05] 2025-10-09 00:04:35,514 | INFO     | architecture information:
[2025-10-08 20:05:05] 2025-10-09 00:04:35,514 | INFO     | executing command: cat /etc/os-release
[2025-10-08 20:05:05] 2025-10-09 00:04:35,529 | INFO     | cat /etc/os-release:
[2025-10-08 20:05:05] NAME="CentOS Linux"
[2025-10-08 20:05:05] VERSION="7 (Core)"
[2025-10-08 20:05:05] ID="centos"
[2025-10-08 20:05:05] ID_LIKE="rhel fedora"
[2025-10-08 20:05:05] VERSION_ID="7"
[2025-10-08 20:05:05] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-08 20:05:05] ANSI_COLOR="0;31"
[2025-10-08 20:05:05] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-08 20:05:05] HOME_URL="https://www.centos.org/"
[2025-10-08 20:05:05] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-08 20:05:05] 
[2025-10-08 20:05:05] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-08 20:05:05] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-08 20:05:05] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-08 20:05:05] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-08 20:05:05] 
[2025-10-08 20:05:05] 2025-10-09 00:04:35,529 | INFO     | ***************************************
[2025-10-08 20:05:05] 2025-10-09 00:04:36,032 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-10-08 20:05:05] 2025-10-09 00:04:36,048 | INFO     | sufficient remaining disk space (29438771200 B)
[2025-10-08 20:05:05] 2025-10-09 00:04:36,049 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-08 20:05:05] 2025-10-09 00:04:36,049 | INFO     | current server update state: UPDATING_FINAL
[2025-10-08 20:05:05] 2025-10-09 00:04:36,049 | INFO     | update_server=False
[2025-10-08 20:05:05] 2025-10-09 00:04:36,049 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-08 20:05:05] 2025-10-09 00:04:36,050 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-08 20:05:05] 2025-10-09 00:04:36,050 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-08 20:05:05] 2025-10-09 00:04:36,050 | INFO     | aborting loop
[2025-10-08 20:05:05] 2025-10-09 00:04:36,051 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-08 20:05:05] 2025-10-09 00:04:36,051 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-08 20:05:05] 2025-10-09 00:04:36,320 | INFO     | all data control threads have been joined
[2025-10-08 20:05:05] 2025-10-09 00:04:36,693 | INFO     | all job control threads have been joined
[2025-10-08 20:05:05] 2025-10-09 00:04:37,055 | INFO     | [job] retrieve thread has finished
[2025-10-08 20:05:05] 2025-10-09 00:04:37,056 | INFO     | [job] job monitor thread has finished
[2025-10-08 20:05:05] 2025-10-09 00:04:37,056 | INFO     | [job] queue monitor thread has finished
[2025-10-08 20:05:05] 2025-10-09 00:04:37,082 | INFO     | all payload control threads have been joined
[2025-10-08 20:05:05] 2025-10-09 00:04:37,116 | INFO     | [payload] execute_payloads thread has finished
[2025-10-08 20:05:05] 2025-10-09 00:04:37,183 | INFO     | [payload] validate_pre thread has finished
[2025-10-08 20:05:05] 2025-10-09 00:04:37,326 | INFO     | [data] control thread has finished
[2025-10-08 20:05:05] 2025-10-09 00:04:37,627 | INFO     | [data] copytool_in thread has finished
[2025-10-08 20:05:05] 2025-10-09 00:04:37,699 | INFO     | [job] control thread has finished
[2025-10-08 20:05:05] 2025-10-09 00:04:37,757 | INFO     | [payload] failed_post thread has finished
[2025-10-08 20:05:05] 2025-10-09 00:04:37,959 | INFO     | [monitor] cgroup control has ended
[2025-10-08 20:05:05] 2025-10-09 00:04:38,055 | INFO     | [data] copytool_out thread has finished
[2025-10-08 20:05:05] 2025-10-09 00:04:38,087 | INFO     | [payload] control thread has finished
[2025-10-08 20:05:05] 2025-10-09 00:04:38,350 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-08 20:05:05] 2025-10-09 00:04:38,405 | INFO     | [job] validate thread has finished
[2025-10-08 20:05:05] 2025-10-09 00:04:38,476 | INFO     | [payload] validate_post thread has finished
[2025-10-08 20:05:05] 2025-10-09 00:04:38,510 | INFO     | [job] create_data_payload thread has finished
[2025-10-08 20:05:05] 2025-10-09 00:04:40,053 | INFO     | [data] queue_monitor thread has finished
[2025-10-08 20:05:05] 2025-10-09 00:04:40,429 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139852044826432)>', '<ExcThread(monitor, started 139851181586176)>']
[2025-10-08 20:05:05] 2025-10-09 00:04:45,436 | INFO     | all workflow threads have been joined
[2025-10-08 20:05:05] 2025-10-09 00:04:45,442 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-08 20:05:05] 2025-10-09 00:04:45,443 | INFO     | traces error code: 0
[2025-10-08 20:05:05] 2025-10-09 00:04:45,443 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-08 20:05:05] 2025-10-09 00:05:05,574 | INFO     | PID=29484 has CPU usage=3.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-08 20:05:05] 2025-10-09 00:05:05,574 | INFO     | found 0 job(s) in 20 queues
[2025-10-08 20:05:05] 2025-10-09 00:05:05,574 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-08 20:05:05] 2025-10-09 00:05:05,574 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-08 20:05:05] 2025-10-09 00:05:05,574 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-08 20:05:05] 2025-10-09 00:05:05,574 | INFO     | [monitor] control thread has ended
[2025-10-08 20:05:05] 2025-10-09 00:05:05,667 [wrapper] ==== pilot stdout END ====
[2025-10-08 20:05:05] 2025-10-09 00:05:05,671 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-08 20:05:05] 2025-10-09 00:05:05,675 [wrapper] pilotpid: 29484
[2025-10-08 20:05:05] 2025-10-09 00:05:05,679 [wrapper] Pilot exit status: 0
[2025-10-08 20:05:05] 2025-10-09 00:05:05,696 [wrapper] pandaids: 6836332681
[2025-10-08 20:05:05] 2025-10-09 00:05:05,739 [wrapper] cleanup supervisor_pilot 13372 29485
[2025-10-08 20:05:05] 2025-10-09 00:05:05,744 [wrapper] Test setup, not cleaning
[2025-10-08 20:05:05] 2025-10-09 00:05:05,748 [wrapper] apfmon messages muted
[2025-10-08 20:05:05] 2025-10-09 00:05:05,752 [wrapper] ==== wrapper stdout END ====
[2025-10-08 20:05:05] 2025-10-09 00:05:05,756 [wrapper] ==== wrapper stderr END ====
[2025-10-08 20:05:05]  *** Error codes and diagnostics ***
[2025-10-08 20:05:05]     "exeErrorCode": 0,
[2025-10-08 20:05:05]     "exeErrorDiag": "",
[2025-10-08 20:05:05]     "pilotErrorCode": 0,
[2025-10-08 20:05:05]     "pilotErrorDiag": "",
[2025-10-08 20:05:05]  *** Listing of results directory ***
[2025-10-08 20:05:05] total 408076
[2025-10-08 20:05:05] -rw-r--r-- 1 boincer umatlas    557409 Oct  8 14:44 pilot3.tar.gz
[2025-10-08 20:05:05] -rw-r--r-- 1 boincer umatlas      5112 Oct  8 14:47 queuedata.json
[2025-10-08 20:05:05] -rwx------ 1 boincer umatlas     36292 Oct  8 14:47 runpilot2-wrapper.sh
[2025-10-08 20:05:05] -rw-r--r-- 1 boincer umatlas       100 Oct  8 18:55 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-08 20:05:05] -rwxr-xr-x 1 boincer umatlas      7986 Oct  8 18:55 run_atlas
[2025-10-08 20:05:05] -rw-r--r-- 1 boincer umatlas       105 Oct  8 18:55 job.xml
[2025-10-08 20:05:05] -rw-r--r-- 2 boincer umatlas 221926252 Oct  8 18:55 EVNT.46676267._000260.pool.root.1
[2025-10-08 20:05:05] -rw-r--r-- 2 boincer umatlas     15120 Oct  8 18:55 start_atlas.sh
[2025-10-08 20:05:05] drwxrwx--x 2 boincer umatlas      4096 Oct  8 18:55 shared
[2025-10-08 20:05:05] -rw-r--r-- 2 boincer umatlas    569677 Oct  8 18:55 input.tar.gz
[2025-10-08 20:05:05] -rw-r--r-- 1 boincer umatlas         0 Oct  8 18:55 boinc_lockfile
[2025-10-08 20:05:05] -rw-r--r-- 1 boincer umatlas      2548 Oct  8 18:55 pandaJob.out
[2025-10-08 20:05:05] -rw------- 1 boincer umatlas    979306 Oct  8 18:55 agis_schedconf.cvmfs.json
[2025-10-08 20:05:05] -rw------- 1 boincer umatlas   1560401 Oct  8 18:55 agis_ddmendpoints.agis.ALL.json
[2025-10-08 20:05:05] drwx------ 5 boincer umatlas      4096 Oct  8 18:55 pilot3
[2025-10-08 20:05:05] -rw-r--r-- 1 boincer umatlas      5951 Oct  8 20:02 init_data.xml
[2025-10-08 20:05:05] -rw------- 1 boincer umatlas 190056805 Oct  8 20:03 HITS.46676269._006562.pool.root.1
[2025-10-08 20:05:05] -rw------- 1 boincer umatlas      1046 Oct  8 20:04 memory_monitor_summary.json
[2025-10-08 20:05:05] -rw------- 1 boincer umatlas        95 Oct  8 20:04 pilot_heartbeat.json
[2025-10-08 20:05:05] -rw-r--r-- 1 boincer umatlas       530 Oct  8 20:04 boinc_task_state.xml
[2025-10-08 20:05:05] -rw------- 1 boincer umatlas    387475 Oct  8 20:04 log.46676269._006562.job.log.tgz.1
[2025-10-08 20:05:05] -rw------- 1 boincer umatlas      7851 Oct  8 20:04 heartbeat.json
[2025-10-08 20:05:05] -rw-r--r-- 1 boincer umatlas      8192 Oct  8 20:04 boinc_mmap_file
[2025-10-08 20:05:05] -rw-r--r-- 1 boincer umatlas        27 Oct  8 20:04 wrapper_checkpoint.txt
[2025-10-08 20:05:05] -rw------- 1 boincer umatlas       745 Oct  8 20:05 pilotlog.txt
[2025-10-08 20:05:05] -rw------- 1 boincer umatlas    604260 Oct  8 20:05 log.46676269._006562.job.log.1
[2025-10-08 20:05:05] -rw------- 1 boincer umatlas       357 Oct  8 20:05 output.list
[2025-10-08 20:05:05] -rw-r--r-- 1 boincer umatlas       620 Oct  8 20:05 runtime_log
[2025-10-08 20:05:05] -rw------- 1 boincer umatlas   1013760 Oct  8 20:05 result.tar.gz
[2025-10-08 20:05:05] -rw-r--r-- 1 boincer umatlas      8700 Oct  8 20:05 runtime_log.err
[2025-10-08 20:05:05] -rw------- 1 boincer umatlas       658 Oct  8 20:05 bL5LDmUNoQ8n9Rq4apOajLDm4fhM0noT9bVof3QYDmfhMMDmPgTi8n.diag
[2025-10-08 20:05:05] -rw-r--r-- 1 boincer umatlas     21877 Oct  8 20:05 stderr.txt
[2025-10-08 20:05:05] HITS file was successfully produced:
[2025-10-08 20:05:05] -rw------- 1 boincer umatlas 190056805 Oct  8 20:03 shared/HITS.pool.root.1
[2025-10-08 20:05:05]  *** Contents of shared directory: ***
[2025-10-08 20:05:05] total 403904
[2025-10-08 20:05:05] -rw-r--r-- 2 boincer umatlas 221926252 Oct  8 18:55 ATLAS.root_0
[2025-10-08 20:05:05] -rw-r--r-- 2 boincer umatlas     15120 Oct  8 18:55 start_atlas.sh
[2025-10-08 20:05:05] -rw-r--r-- 2 boincer umatlas    569677 Oct  8 18:55 input.tar.gz
[2025-10-08 20:05:05] -rw------- 1 boincer umatlas 190056805 Oct  8 20:03 HITS.pool.root.1
[2025-10-08 20:05:05] -rw------- 1 boincer umatlas   1013760 Oct  8 20:05 result.tar.gz
20:05:07 (25798): run_atlas exited; CPU time 44326.405060
20:05:07 (25798): called boinc_finish(0)

</stderr_txt>
]]>

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