Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
18:55:33 (3900): wrapper (7.7.26015): starting
18:55:33 (3900): wrapper: running run_atlas (--nthreads 8)
[2025-10-08 18:55:33] Arguments: --nthreads 8
[2025-10-08 18:55:33] Threads: 8
[2025-10-08 18:55:33] Checking for CVMFS
[2025-10-08 18:55:33] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-08 18:55:33] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-08 18:55:33] Running cvmfs_config stat atlas.cern.ch
[2025-10-08 18:55:33] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-08 18:55:33] 2.11.2.0 1072 47722 107600 151488 1 17 18222158 18432001 91 130560 0 39767038 99.968 2215533 39811 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-08 18:55:33] CVMFS is ok
[2025-10-08 18:55:33] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-08 18:55:33] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-08 18:55:33] Further information can be found at the LHC@home message board.
[2025-10-08 18:55:33] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-08 18:55:33] Checking for apptainer binary...
[2025-10-08 18:55:33] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-08 18:55:33] Running /usr/bin/apptainer --version
[2025-10-08 18:55:33] apptainer version 1.3.2-1.el7
[2025-10-08 18:55:33] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-08 18:55:34] c-206-15.aglt2.org
[2025-10-08 18:55:34] apptainer works
[2025-10-08 18:55:34] Set ATHENA_PROC_NUMBER=8
[2025-10-08 18:55:34] Set ATHENA_CORE_NUMBER=8
[2025-10-08 18:55:34] Starting ATLAS job with PandaID=6836332679
[2025-10-08 18:55:34] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-08 21:55:11]  *** The last 200 lines of the pilot log: ***
[2025-10-08 21:55:11] 2025-10-09 01:54:30,096 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-08 21:55:11] 2025-10-09 01:54:30,096 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-08 21:55:11] 2025-10-09 01:54:30,097 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-08 21:55:11] 2025-10-09 01:54:30,099 | INFO     | fitting pss+swap vs Time
[2025-10-08 21:55:11] 2025-10-09 01:54:30,100 | INFO     | sum of square deviations: 1690450300.0
[2025-10-08 21:55:11] 2025-10-09 01:54:30,101 | INFO     | sum of deviations: 10792424146.000004
[2025-10-08 21:55:11] 2025-10-09 01:54:30,101 | INFO     | mean x: 1759969511.5
[2025-10-08 21:55:11] 2025-10-09 01:54:30,101 | INFO     | mean y: 2454991.6931818184
[2025-10-08 21:55:11] 2025-10-09 01:54:30,101 | INFO     | -- intersect: -11233804040.670225
[2025-10-08 21:55:11] 2025-10-09 01:54:30,101 | INFO     | intersect: -11233804040.670225
[2025-10-08 21:55:11] 2025-10-09 01:54:30,101 | INFO     | chi2: 2.0063158308915487
[2025-10-08 21:55:11] 2025-10-09 01:54:30,102 | INFO     | sum of square deviations: 1550429070.0
[2025-10-08 21:55:11] 2025-10-09 01:54:30,102 | INFO     | sum of deviations: 21641416520.000004
[2025-10-08 21:55:11] 2025-10-09 01:54:30,102 | INFO     | mean x: 1759969359.0
[2025-10-08 21:55:11] 2025-10-09 01:54:30,103 | INFO     | mean y: 2466516.830409357
[2025-10-08 21:55:11] 2025-10-09 01:54:30,103 | INFO     | -- intersect: -24563784656.824646
[2025-10-08 21:55:11] 2025-10-09 01:54:30,103 | INFO     | intersect: -24563784656.824646
[2025-10-08 21:55:11] 2025-10-09 01:54:30,103 | INFO     | chi2: 1.2330362825630277
[2025-10-08 21:55:11] 2025-10-09 01:54:30,103 | INFO     | current chi2=1.2330362825630277 (change=38.54226420497804 %)
[2025-10-08 21:55:11] 2025-10-09 01:54:30,103 | INFO     | sum of square deviations: 1418361477.5
[2025-10-08 21:55:11] 2025-10-09 01:54:30,104 | INFO     | sum of deviations: 20675094871.5
[2025-10-08 21:55:11] 2025-10-09 01:54:30,104 | INFO     | mean x: 1759969206.5
[2025-10-08 21:55:11] 2025-10-09 01:54:30,104 | INFO     | mean y: 2465400.692771084
[2025-10-08 21:55:11] 2025-10-09 01:54:30,105 | INFO     | -- intersect: -25652158538.645058
[2025-10-08 21:55:11] 2025-10-09 01:54:30,105 | INFO     | intersect: -25652158538.645058
[2025-10-08 21:55:11] 2025-10-09 01:54:30,105 | INFO     | chi2: 1.2340017980256837
[2025-10-08 21:55:11] 2025-10-09 01:54:30,105 | INFO     | current chi2=1.2340017980256837 (change=-0.07830389716100214 %)
[2025-10-08 21:55:11] 2025-10-09 01:54:30,105 | INFO     | right removable region: 165
[2025-10-08 21:55:11] 2025-10-09 01:54:30,105 | INFO     | sum of square deviations: 1550429070.0
[2025-10-08 21:55:11] 2025-10-09 01:54:30,106 | INFO     | sum of deviations: -11314856023.0
[2025-10-08 21:55:11] 2025-10-09 01:54:30,106 | INFO     | mean x: 1759969664.0
[2025-10-08 21:55:11] 2025-10-09 01:54:30,106 | INFO     | mean y: 2478704.3684210526
[2025-10-08 21:55:11] 2025-10-09 01:54:30,106 | INFO     | -- intersect: 12846538286.537947
[2025-10-08 21:55:11] 2025-10-09 01:54:30,107 | INFO     | intersect: 12846538286.537947
[2025-10-08 21:55:11] 2025-10-09 01:54:30,107 | INFO     | chi2: 0.8048186594386446
[2025-10-08 21:55:11] 2025-10-09 01:54:30,107 | INFO     | current chi2=0.8048186594386446 (change=59.88574445524828 %)
[2025-10-08 21:55:11] 2025-10-09 01:54:30,107 | INFO     | sum of square deviations: 1418361477.5
[2025-10-08 21:55:11] 2025-10-09 01:54:30,108 | INFO     | sum of deviations: -9296339244.0
[2025-10-08 21:55:11] 2025-10-09 01:54:30,108 | INFO     | mean x: 1759969816.5
[2025-10-08 21:55:11] 2025-10-09 01:54:30,108 | INFO     | mean y: 2476375.7108433736
[2025-10-08 21:55:11] 2025-10-09 01:54:30,108 | INFO     | -- intersect: 11537812559.701662
[2025-10-08 21:55:11] 2025-10-09 01:54:30,108 | INFO     | intersect: 11537812559.701662
[2025-10-08 21:55:11] 2025-10-09 01:54:30,109 | INFO     | chi2: 0.8016092879551202
[2025-10-08 21:55:11] 2025-10-09 01:54:30,109 | INFO     | current chi2=0.8016092879551202 (change=0.3987695173174685 %)
[2025-10-08 21:55:11] 2025-10-09 01:54:30,109 | INFO     | left removable region: 20
[2025-10-08 21:55:11] 2025-10-09 01:54:30,109 | INFO     | sum of square deviations: 945282840.0
[2025-10-08 21:55:11] 2025-10-09 01:54:30,110 | INFO     | sum of deviations: 2972151861.0
[2025-10-08 21:55:11] 2025-10-09 01:54:30,110 | INFO     | mean x: 1759969786.0
[2025-10-08 21:55:11] 2025-10-09 01:54:30,110 | INFO     | mean y: 2486024.1586206895
[2025-10-08 21:55:11] 2025-10-09 01:54:30,110 | INFO     | -- intersect: -5531198978.272685
[2025-10-08 21:55:11] 2025-10-09 01:54:30,110 | INFO     | intersect: -5531198978.272685
[2025-10-08 21:55:11] 2025-10-09 01:54:30,110 | INFO     | chi2: 0.00026024741407321535
[2025-10-08 21:55:11] 2025-10-09 01:54:30,111 | INFO     | -- intersect: -5531198978.272685
[2025-10-08 21:55:11] 2025-10-09 01:54:30,111 | INFO     | current memory leak: 3.14 B/s (using 145 data points, chi2=0.00)
[2025-10-08 21:55:11] 2025-10-09 01:54:30,111 | INFO     | could have reported an average CPU frequency of 2333 MHz (9 samples)
[2025-10-08 21:55:11] 2025-10-09 01:54:30,111 | INFO     | ..............................
[2025-10-08 21:55:11] 2025-10-09 01:54:30,111 | INFO     | . Timing measurements:
[2025-10-08 21:55:11] 2025-10-09 01:54:30,111 | INFO     | . get job = 0 s
[2025-10-08 21:55:11] 2025-10-09 01:54:30,112 | INFO     | . initial setup = 2 s
[2025-10-08 21:55:11] 2025-10-09 01:54:30,112 | INFO     | . payload setup = 5 s
[2025-10-08 21:55:11] 2025-10-09 01:54:30,112 | INFO     | . stage-in = 0 s
[2025-10-08 21:55:11] 2025-10-09 01:54:30,112 | INFO     | . payload execution = 10690 s
[2025-10-08 21:55:11] 2025-10-09 01:54:30,112 | INFO     | . stage-out = 1 s
[2025-10-08 21:55:11] 2025-10-09 01:54:30,112 | INFO     | . log creation = 0 s
[2025-10-08 21:55:11] 2025-10-09 01:54:30,112 | INFO     | ..............................
[2025-10-08 21:55:11] 2025-10-09 01:54:30,207 | INFO     | 
[2025-10-08 21:55:11] 2025-10-09 01:54:30,207 | INFO     | job summary report
[2025-10-08 21:55:11] 2025-10-09 01:54:30,207 | INFO     | --------------------------------------------------
[2025-10-08 21:55:11] 2025-10-09 01:54:30,207 | INFO     | PanDA job id: 6836332679
[2025-10-08 21:55:11] 2025-10-09 01:54:30,207 | INFO     | task id: 46676269
[2025-10-08 21:55:11] 2025-10-09 01:54:30,207 | INFO     | errors: (none)
[2025-10-08 21:55:11] 2025-10-09 01:54:30,207 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-08 21:55:11] 2025-10-09 01:54:30,207 | INFO     | pilot state: finished 
[2025-10-08 21:55:11] 2025-10-09 01:54:30,208 | INFO     | transexitcode: 0
[2025-10-08 21:55:11] 2025-10-09 01:54:30,208 | INFO     | exeerrorcode: 0
[2025-10-08 21:55:11] 2025-10-09 01:54:30,208 | INFO     | exeerrordiag: 
[2025-10-08 21:55:11] 2025-10-09 01:54:30,208 | INFO     | exitcode: 0
[2025-10-08 21:55:11] 2025-10-09 01:54:30,208 | INFO     | exitmsg: OK
[2025-10-08 21:55:11] 2025-10-09 01:54:30,208 | INFO     | cpuconsumptiontime: 81609 s
[2025-10-08 21:55:11] 2025-10-09 01:54:30,208 | INFO     | nevents: 400
[2025-10-08 21:55:11] 2025-10-09 01:54:30,208 | INFO     | neventsw: 0
[2025-10-08 21:55:11] 2025-10-09 01:54:30,208 | INFO     | pid: 26699
[2025-10-08 21:55:11] 2025-10-09 01:54:30,208 | INFO     | pgrp: 26699
[2025-10-08 21:55:11] 2025-10-09 01:54:30,208 | INFO     | corecount: 8
[2025-10-08 21:55:11] 2025-10-09 01:54:30,209 | INFO     | event service: False
[2025-10-08 21:55:11] 2025-10-09 01:54:30,209 | INFO     | sizes: {0: 2348852, 5: 2349114, 11: 2349170, 10700: 2378210, 10701: 2378209, 10703: 2387447, 10707: 2387649}
[2025-10-08 21:55:11] 2025-10-09 01:54:30,209 | INFO     | --------------------------------------------------
[2025-10-08 21:55:11] 2025-10-09 01:54:30,209 | INFO     | 
[2025-10-08 21:55:11] 2025-10-09 01:54:30,209 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-10-08 21:55:11] 2025-10-09 01:54:30,226 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-08 21:55:11] 2025-10-09 01:54:30,226 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-08 21:55:11] 2025-10-09 01:54:30,227 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-08 21:55:11] 2025-10-09 01:54:30,227 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-08 21:55:11] 2025-10-09 01:54:30,227 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-08 21:55:11] 2025-10-09 01:54:30,227 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-08 21:55:11] 2025-10-09 01:54:30,227 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-08 21:55:11] 2025-10-09 01:54:30,227 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-08 21:55:11] 2025-10-09 01:54:30,228 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-08 21:55:11] 2025-10-09 01:54:30,228 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-08 21:55:11] 2025-10-09 01:54:30,228 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-08 21:55:11] 2025-10-09 01:54:30,228 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-08 21:55:11] 2025-10-09 01:54:30,228 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-08 21:55:11] 2025-10-09 01:54:30,228 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-08 21:55:11] 2025-10-09 01:54:30,229 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-08 21:55:11] 2025-10-09 01:54:30,229 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-08 21:55:11] 2025-10-09 01:54:30,229 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-08 21:55:11] 2025-10-09 01:54:30,229 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-08 21:55:11] 2025-10-09 01:54:30,229 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-08 21:55:11] 2025-10-09 01:54:30,229 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-08 21:55:11] 2025-10-09 01:54:30,230 | INFO     | job 6836332679 has completed (purged errors)
[2025-10-08 21:55:11] 2025-10-09 01:54:30,230 | INFO     | overall cleanup function is called
[2025-10-08 21:55:11] 2025-10-09 01:54:31,239 | INFO     | --- collectZombieJob: --- 10, [26699]
[2025-10-08 21:55:11] 2025-10-09 01:54:31,239 | INFO     | zombie collector waiting for pid 26699
[2025-10-08 21:55:11] 2025-10-09 01:54:31,239 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-08 21:55:11] 2025-10-09 01:54:31,239 | INFO     | collected zombie processes
[2025-10-08 21:55:11] 2025-10-09 01:54:31,239 | INFO     | will attempt to kill all subprocesses of pid=26699
[2025-10-08 21:55:11] 2025-10-09 01:54:31,385 | INFO     | process IDs to be killed: [26699] (in reverse order)
[2025-10-08 21:55:11] 2025-10-09 01:54:31,423 | WARNING  | found no corresponding commands to process id(s)
[2025-10-08 21:55:11] 2025-10-09 01:54:31,424 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-08 21:55:11] 2025-10-09 01:54:31,426 | INFO     | did not find any defunct processes belonging to 26699
[2025-10-08 21:55:11] 2025-10-09 01:54:31,429 | INFO     | did not find any defunct processes belonging to 26699
[2025-10-08 21:55:11] 2025-10-09 01:54:31,429 | INFO     | ready for new job
[2025-10-08 21:55:11] 2025-10-09 01:54:31,429 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-08 21:55:11] 2025-10-09 01:54:31,430 | INFO     | ***************************************
[2025-10-08 21:55:11] 2025-10-09 01:54:31,431 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-08 21:55:11] 2025-10-09 01:54:31,431 | INFO     | ***************************************
[2025-10-08 21:55:11] 2025-10-09 01:54:31,431 | INFO     | 
[2025-10-08 21:55:11] 2025-10-09 01:54:31,432 | INFO     | architecture information:
[2025-10-08 21:55:11] 2025-10-09 01:54:31,432 | INFO     | executing command: cat /etc/os-release
[2025-10-08 21:55:11] 2025-10-09 01:54:31,441 | INFO     | cat /etc/os-release:
[2025-10-08 21:55:11] NAME="CentOS Linux"
[2025-10-08 21:55:11] VERSION="7 (Core)"
[2025-10-08 21:55:11] ID="centos"
[2025-10-08 21:55:11] ID_LIKE="rhel fedora"
[2025-10-08 21:55:11] VERSION_ID="7"
[2025-10-08 21:55:11] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-08 21:55:11] ANSI_COLOR="0;31"
[2025-10-08 21:55:11] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-08 21:55:11] HOME_URL="https://www.centos.org/"
[2025-10-08 21:55:11] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-08 21:55:11] 
[2025-10-08 21:55:11] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-08 21:55:11] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-08 21:55:11] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-08 21:55:11] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-08 21:55:11] 
[2025-10-08 21:55:11] 2025-10-09 01:54:31,441 | INFO     | ***************************************
[2025-10-08 21:55:11] 2025-10-09 01:54:31,944 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-10-08 21:55:11] 2025-10-09 01:54:31,958 | INFO     | sufficient remaining disk space (27917287424 B)
[2025-10-08 21:55:11] 2025-10-09 01:54:31,959 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-08 21:55:11] 2025-10-09 01:54:31,959 | INFO     | current server update state: UPDATING_FINAL
[2025-10-08 21:55:11] 2025-10-09 01:54:31,959 | INFO     | update_server=False
[2025-10-08 21:55:11] 2025-10-09 01:54:31,959 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-08 21:55:11] 2025-10-09 01:54:31,960 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-08 21:55:11] 2025-10-09 01:54:31,960 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-08 21:55:11] 2025-10-09 01:54:32,512 | INFO     | all data control threads have been joined
[2025-10-08 21:55:11] 2025-10-09 01:54:32,754 | INFO     | all payload control threads have been joined
[2025-10-08 21:55:11] 2025-10-09 01:54:32,848 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-08 21:55:11] 2025-10-09 01:54:32,848 | INFO     | aborting loop
[2025-10-08 21:55:11] 2025-10-09 01:54:32,965 | INFO     | [job] retrieve thread has finished
[2025-10-08 21:55:11] 2025-10-09 01:54:32,966 | INFO     | [job] queue monitor thread has finished
[2025-10-08 21:55:11] 2025-10-09 01:54:33,056 | INFO     | [payload] execute_payloads thread has finished
[2025-10-08 21:55:11] 2025-10-09 01:54:33,178 | INFO     | all job control threads have been joined
[2025-10-08 21:55:11] 2025-10-09 01:54:33,410 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-08 21:55:11] 2025-10-09 01:54:33,414 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-08 21:55:11] 2025-10-09 01:54:33,516 | INFO     | [payload] failed_post thread has finished
[2025-10-08 21:55:11] 2025-10-09 01:54:33,517 | INFO     | [data] control thread has finished
[2025-10-08 21:55:11] 2025-10-09 01:54:33,759 | INFO     | [payload] control thread has finished
[2025-10-08 21:55:11] 2025-10-09 01:54:33,853 | INFO     | [job] job monitor thread has finished
[2025-10-08 21:55:11] 2025-10-09 01:54:33,921 | INFO     | [job] create_data_payload thread has finished
[2025-10-08 21:55:11] 2025-10-09 01:54:33,924 | INFO     | [payload] validate_pre thread has finished
[2025-10-08 21:55:11] 2025-10-09 01:54:33,965 | INFO     | [data] copytool_in thread has finished
[2025-10-08 21:55:11] 2025-10-09 01:54:33,984 | INFO     | [job] validate thread has finished
[2025-10-08 21:55:11] 2025-10-09 01:54:34,066 | INFO     | [payload] validate_post thread has finished
[2025-10-08 21:55:11] 2025-10-09 01:54:34,184 | INFO     | [job] control thread has finished
[2025-10-08 21:55:11] 2025-10-09 01:54:35,416 | INFO     | [data] copytool_out thread has finished
[2025-10-08 21:55:11] 2025-10-09 01:54:35,965 | INFO     | [data] queue_monitor thread has finished
[2025-10-08 21:55:11] 2025-10-09 01:55:02,237 | INFO     | PID=9593 has CPU usage=4.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-10-08 21:55:11] 2025-10-09 01:55:02,238 | INFO     | .. there are 3 such processes running
[2025-10-08 21:55:11] 2025-10-09 01:55:02,265 | INFO     | found 0 job(s) in 20 queues
[2025-10-08 21:55:11] 2025-10-09 01:55:02,265 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-08 21:55:11] 2025-10-09 01:55:02,265 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-08 21:55:11] 2025-10-09 01:55:04,569 | INFO     | [monitor] cgroup control has ended
[2025-10-08 21:55:11] 2025-10-09 01:55:05,797 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139678329816896)>', '<ExcThread(monitor, started 139677747103488)>']
[2025-10-08 21:55:11] 2025-10-09 01:55:06,286 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-08 21:55:11] 2025-10-09 01:55:06,286 | INFO     | [monitor] control thread has ended
[2025-10-08 21:55:11] 2025-10-09 01:55:10,822 | INFO     | all workflow threads have been joined
[2025-10-08 21:55:11] 2025-10-09 01:55:10,822 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-08 21:55:11] 2025-10-09 01:55:10,822 | INFO     | traces error code: 0
[2025-10-08 21:55:11] 2025-10-09 01:55:10,825 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-08 21:55:11] 2025-10-09 01:55:10,967 [wrapper] ==== pilot stdout END ====
[2025-10-08 21:55:11] 2025-10-09 01:55:10,969 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-08 21:55:11] 2025-10-09 01:55:10,972 [wrapper] pilotpid: 9593
[2025-10-08 21:55:11] 2025-10-09 01:55:10,975 [wrapper] Pilot exit status: 0
[2025-10-08 21:55:11] 2025-10-09 01:55:10,984 [wrapper] pandaids: 6836332679
[2025-10-08 21:55:11] 2025-10-09 01:55:11,024 [wrapper] cleanup supervisor_pilot 11372 9594
[2025-10-08 21:55:11] 2025-10-09 01:55:11,026 [wrapper] Test setup, not cleaning
[2025-10-08 21:55:11] 2025-10-09 01:55:11,028 [wrapper] apfmon messages muted
[2025-10-08 21:55:11] 2025-10-09 01:55:11,031 [wrapper] ==== wrapper stdout END ====
[2025-10-08 21:55:11] 2025-10-09 01:55:11,033 [wrapper] ==== wrapper stderr END ====
[2025-10-08 21:55:11]  *** Error codes and diagnostics ***
[2025-10-08 21:55:11]     "exeErrorCode": 0,
[2025-10-08 21:55:11]     "exeErrorDiag": "",
[2025-10-08 21:55:11]     "pilotErrorCode": 0,
[2025-10-08 21:55:11]     "pilotErrorDiag": "",
[2025-10-08 21:55:11]  *** Listing of results directory ***
[2025-10-08 21:55:11] total 410880
[2025-10-08 21:55:11] -rw-r--r-- 1 boincer umatlas    557409 Oct  8 14:44 pilot3.tar.gz
[2025-10-08 21:55:11] -rw-r--r-- 1 boincer umatlas      5112 Oct  8 14:47 queuedata.json
[2025-10-08 21:55:11] -rwx------ 1 boincer umatlas     36292 Oct  8 14:47 runpilot2-wrapper.sh
[2025-10-08 21:55:11] -rw-r--r-- 1 boincer umatlas       100 Oct  8 18:55 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-08 21:55:11] -rwxr-xr-x 1 boincer umatlas      7986 Oct  8 18:55 run_atlas
[2025-10-08 21:55:11] -rw-r--r-- 1 boincer umatlas       105 Oct  8 18:55 job.xml
[2025-10-08 21:55:11] -rw-r--r-- 2 boincer umatlas 221926252 Oct  8 18:55 EVNT.46676267._000260.pool.root.1
[2025-10-08 21:55:11] -rw-r--r-- 2 boincer umatlas     15120 Oct  8 18:55 start_atlas.sh
[2025-10-08 21:55:11] drwxrwx--x 2 boincer umatlas      4096 Oct  8 18:55 shared
[2025-10-08 21:55:11] -rw-r--r-- 2 boincer umatlas    569680 Oct  8 18:55 input.tar.gz
[2025-10-08 21:55:11] -rw-r--r-- 1 boincer umatlas         0 Oct  8 18:55 boinc_lockfile
[2025-10-08 21:55:11] -rw-r--r-- 1 boincer umatlas      2548 Oct  8 18:55 pandaJob.out
[2025-10-08 21:55:11] -rw------- 1 boincer umatlas    979306 Oct  8 18:55 agis_schedconf.cvmfs.json
[2025-10-08 21:55:11] -rw------- 1 boincer umatlas   1560401 Oct  8 18:55 agis_ddmendpoints.agis.ALL.json
[2025-10-08 21:55:11] drwx------ 5 boincer umatlas      4096 Oct  8 18:55 pilot3
[2025-10-08 21:55:11] -rw-r--r-- 1 boincer umatlas      5952 Oct  8 21:45 init_data.xml
[2025-10-08 21:55:11] -rw------- 1 boincer umatlas 191059548 Oct  8 21:53 HITS.46676269._006560.pool.root.1
[2025-10-08 21:55:11] -rw-r--r-- 1 boincer umatlas       530 Oct  8 21:54 boinc_task_state.xml
[2025-10-08 21:55:11] -rw------- 1 boincer umatlas      1050 Oct  8 21:54 memory_monitor_summary.json
[2025-10-08 21:55:11] -rw------- 1 boincer umatlas    419349 Oct  8 21:54 log.46676269._006560.job.log.tgz.1
[2025-10-08 21:55:11] -rw------- 1 boincer umatlas      7850 Oct  8 21:54 heartbeat.json
[2025-10-08 21:55:11] -rw-r--r-- 1 boincer umatlas      8192 Oct  8 21:54 boinc_mmap_file
[2025-10-08 21:55:11] -rw-r--r-- 1 boincer umatlas        28 Oct  8 21:54 wrapper_checkpoint.txt
[2025-10-08 21:55:11] -rw------- 1 boincer umatlas        95 Oct  8 21:55 pilot_heartbeat.json
[2025-10-08 21:55:11] -rw------- 1 boincer umatlas      4820 Oct  8 21:55 pilotlog.txt
[2025-10-08 21:55:11] -rw------- 1 boincer umatlas   1504930 Oct  8 21:55 log.46676269._006560.job.log.1
[2025-10-08 21:55:11] -rw------- 1 boincer umatlas       357 Oct  8 21:55 output.list
[2025-10-08 21:55:11] -rw-r--r-- 1 boincer umatlas       620 Oct  8 21:55 runtime_log
[2025-10-08 21:55:11] -rw------- 1 boincer umatlas   1945600 Oct  8 21:55 result.tar.gz
[2025-10-08 21:55:11] -rw-r--r-- 1 boincer umatlas      8704 Oct  8 21:55 runtime_log.err
[2025-10-08 21:55:11] -rw------- 1 boincer umatlas       661 Oct  8 21:55 jZ2LDmUNoQ8n9Rq4apOajLDm4fhM0noT9bVof3QYDmdhMMDm3L2pdn.diag
[2025-10-08 21:55:11] -rw-r--r-- 1 boincer umatlas     20859 Oct  8 21:55 stderr.txt
[2025-10-08 21:55:11] HITS file was successfully produced:
[2025-10-08 21:55:11] -rw------- 1 boincer umatlas 191059548 Oct  8 21:53 shared/HITS.pool.root.1
[2025-10-08 21:55:11]  *** Contents of shared directory: ***
[2025-10-08 21:55:11] total 405792
[2025-10-08 21:55:11] -rw-r--r-- 2 boincer umatlas 221926252 Oct  8 18:55 ATLAS.root_0
[2025-10-08 21:55:11] -rw-r--r-- 2 boincer umatlas     15120 Oct  8 18:55 start_atlas.sh
[2025-10-08 21:55:11] -rw-r--r-- 2 boincer umatlas    569680 Oct  8 18:55 input.tar.gz
[2025-10-08 21:55:11] -rw------- 1 boincer umatlas 191059548 Oct  8 21:53 HITS.pool.root.1
[2025-10-08 21:55:11] -rw------- 1 boincer umatlas   1945600 Oct  8 21:55 result.tar.gz
21:55:12 (3900): run_atlas exited; CPU time 81740.630184
21:55:12 (3900): called boinc_finish(0)

</stderr_txt>
]]>

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