Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
01:23:14 (2252930): wrapper (7.7.26015): starting
01:23:14 (2252930): wrapper: running run_atlas (--nthreads 2)
[2025-10-09 01:23:14] Arguments: --nthreads 2
[2025-10-09 01:23:14] Threads: 2
[2025-10-09 01:23:14] Checking for CVMFS
[2025-10-09 01:23:14] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-09 01:23:15] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-09 01:23:15] Running cvmfs_config stat atlas.cern.ch
[2025-10-09 01:23:15] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-09 01:23:15] 2.9.2.0 2081766 738 53972 151489 0 57 5359368 36864001 0 130560 0 449564 99.983 30753 1092 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-09 01:23:15] CVMFS is ok
[2025-10-09 01:23:15] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-09 01:23:15] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-09 01:23:15] Further information can be found at the LHC@home message board.
[2025-10-09 01:23:15] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-09 01:23:15] Checking for apptainer binary...
[2025-10-09 01:23:15] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-09 01:23:15] Running /usr/bin/apptainer --version
[2025-10-09 01:23:15] apptainer version 1.4.1-1.1
[2025-10-09 01:23:15] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-09 01:23:15] atlasA221
[2025-10-09 01:23:15] apptainer works
[2025-10-09 01:23:15] Set ATHENA_PROC_NUMBER=2
[2025-10-09 01:23:15] Set ATHENA_CORE_NUMBER=2
[2025-10-09 01:23:15] Starting ATLAS job with PandaID=6826450078
[2025-10-09 01:23:15] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-09 03:59:46]  *** The last 200 lines of the pilot log: ***
[2025-10-09 03:59:46] 2025-10-09 01:58:53,855 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-09 03:59:46] 2025-10-09 01:58:53,855 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-09 03:59:46] 2025-10-09 01:58:53,855 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-09 03:59:46] 2025-10-09 01:58:53,856 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-09 03:59:46] 2025-10-09 01:58:53,856 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-09 03:59:46] 2025-10-09 01:58:53,856 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-09 03:59:46] 2025-10-09 01:58:53,856 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-09 03:59:46] 2025-10-09 01:58:53,856 | INFO     | job 6826450078 has completed (purged errors)
[2025-10-09 03:59:46] 2025-10-09 01:58:53,856 | INFO     | overall cleanup function is called
[2025-10-09 03:59:46] 2025-10-09 01:58:54,594 | INFO     | PID=2256633 has CPU usage=3.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-09 03:59:46] 2025-10-09 01:58:54,862 | INFO     | --- collectZombieJob: --- 10, [2263044]
[2025-10-09 03:59:46] 2025-10-09 01:58:54,862 | INFO     | zombie collector waiting for pid 2263044
[2025-10-09 03:59:46] 2025-10-09 01:58:54,862 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-09 03:59:46] 2025-10-09 01:58:54,863 | INFO     | collected zombie processes
[2025-10-09 03:59:46] 2025-10-09 01:58:54,863 | INFO     | will attempt to kill all subprocesses of pid=2263044
[2025-10-09 03:59:46] 2025-10-09 01:58:54,896 | INFO     | process IDs to be killed: [2263044] (in reverse order)
[2025-10-09 03:59:46] 2025-10-09 01:58:54,917 | WARNING  | found no corresponding commands to process id(s)
[2025-10-09 03:59:46] 2025-10-09 01:58:54,917 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-09 03:59:46] 2025-10-09 01:58:54,918 | INFO     | did not find any defunct processes belonging to 2263044
[2025-10-09 03:59:46] 2025-10-09 01:58:54,919 | INFO     | did not find any defunct processes belonging to 2263044
[2025-10-09 03:59:46] 2025-10-09 01:58:54,919 | INFO     | ready for new job
[2025-10-09 03:59:46] 2025-10-09 01:58:54,919 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-09 03:59:46] 2025-10-09 01:58:54,919 | INFO     | ***************************************
[2025-10-09 03:59:46] 2025-10-09 01:58:54,919 | INFO     | ***  PanDA Pilot version 3.10.5.57  ***
[2025-10-09 03:59:46] 2025-10-09 01:58:54,919 | INFO     | ***************************************
[2025-10-09 03:59:46] 2025-10-09 01:58:54,919 | INFO     | 
[2025-10-09 03:59:46] 2025-10-09 01:58:54,920 | INFO     | architecture information:
[2025-10-09 03:59:46] 2025-10-09 01:58:54,920 | INFO     | executing command: cat /etc/os-release
[2025-10-09 03:59:46] 2025-10-09 01:58:54,928 | INFO     | cat /etc/os-release:
[2025-10-09 03:59:46] NAME="CentOS Linux"
[2025-10-09 03:59:46] VERSION="7 (Core)"
[2025-10-09 03:59:46] ID="centos"
[2025-10-09 03:59:46] ID_LIKE="rhel fedora"
[2025-10-09 03:59:46] VERSION_ID="7"
[2025-10-09 03:59:46] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-09 03:59:46] ANSI_COLOR="0;31"
[2025-10-09 03:59:46] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-09 03:59:46] HOME_URL="https://www.centos.org/"
[2025-10-09 03:59:46] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-09 03:59:46] 
[2025-10-09 03:59:46] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-09 03:59:46] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-09 03:59:46] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-09 03:59:46] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-09 03:59:46] 
[2025-10-09 03:59:46] 2025-10-09 01:58:54,928 | INFO     | ***************************************
[2025-10-09 03:59:46] 2025-10-09 01:58:55,432 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-09 03:59:46] 2025-10-09 01:58:55,462 | INFO     | sufficient remaining disk space (205025968128 B)
[2025-10-09 03:59:46] 2025-10-09 01:58:55,462 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-09 03:59:46] 2025-10-09 01:58:55,463 | INFO     | current server update state: UPDATING_FINAL
[2025-10-09 03:59:46] 2025-10-09 01:58:55,463 | INFO     | update_server=False
[2025-10-09 03:59:46] 2025-10-09 01:58:55,463 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-09 03:59:46] 2025-10-09 01:58:55,463 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-10-09 03:59:46] 2025-10-09 01:58:55,464 | INFO     | found 0 job(s) in 20 queues
[2025-10-09 03:59:46] 2025-10-09 01:58:55,464 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-09 03:59:46] 2025-10-09 01:58:55,464 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-09 03:59:46] 2025-10-09 01:58:55,464 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-09 03:59:46] 2025-10-09 01:58:55,465 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-09 03:59:46] 2025-10-09 01:58:55,465 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-09 03:59:46] 2025-10-09 01:58:55,465 | INFO     | aborting loop
[2025-10-09 03:59:46] 2025-10-09 01:58:55,526 | INFO     | all data control threads have been joined
[2025-10-09 03:59:46] 2025-10-09 01:58:55,903 | INFO     | all job control threads have been joined
[2025-10-09 03:59:46] 2025-10-09 01:58:56,061 | INFO     | all payload control threads have been joined
[2025-10-09 03:59:46] 2025-10-09 01:58:56,469 | INFO     | [job] retrieve thread has finished
[2025-10-09 03:59:46] 2025-10-09 01:58:56,471 | INFO     | [job] job monitor thread has finished
[2025-10-09 03:59:46] 2025-10-09 01:58:56,472 | INFO     | [job] queue monitor thread has finished
[2025-10-09 03:59:46] 2025-10-09 01:58:56,529 | INFO     | [data] control thread has finished
[2025-10-09 03:59:46] 2025-10-09 01:58:56,617 | INFO     | [payload] validate_pre thread has finished
[2025-10-09 03:59:46] 2025-10-09 01:58:56,649 | INFO     | [payload] failed_post thread has finished
[2025-10-09 03:59:46] 2025-10-09 01:58:56,909 | INFO     | [job] control thread has finished
[2025-10-09 03:59:46] 2025-10-09 01:58:56,982 | INFO     | [data] copytool_in thread has finished
[2025-10-09 03:59:46] 2025-10-09 01:58:57,067 | INFO     | [payload] control thread has finished
[2025-10-09 03:59:46] 2025-10-09 01:58:57,175 | INFO     | [payload] validate_post thread has finished
[2025-10-09 03:59:46] 2025-10-09 01:58:57,396 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-09 03:59:46] 2025-10-09 01:58:57,472 | INFO     | [data] copytool_out thread has finished
[2025-10-09 03:59:46] 2025-10-09 01:58:57,702 | INFO     | [job] validate thread has finished
[2025-10-09 03:59:46] 2025-10-09 01:58:57,720 | INFO     | [job] create_data_payload thread has finished
[2025-10-09 03:59:46] 2025-10-09 01:58:57,809 | INFO     | [payload] execute_payloads thread has finished
[2025-10-09 03:59:46] 2025-10-09 01:59:01,403 | INFO     | [data] queue_monitor thread has finished
[2025-10-09 03:59:46] 2025-10-09 01:59:06,079 | INFO     | job.realtimelogging is not enabled
[2025-10-09 03:59:46] 2025-10-09 01:59:07,085 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-09 03:59:46] 2025-10-09 01:59:39,104 | INFO     | [monitor] cgroup control has ended
[2025-10-09 03:59:46] 2025-10-09 01:59:41,050 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140257495914304)>', '<ExcThread(monitor, started 140256762382080)>']
[2025-10-09 03:59:46] 2025-10-09 01:59:41,702 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-09 03:59:46] 2025-10-09 01:59:41,702 | INFO     | [monitor] control thread has ended
[2025-10-09 03:59:46] 2025-10-09 01:59:46,076 | INFO     | all workflow threads have been joined
[2025-10-09 03:59:46] 2025-10-09 01:59:46,077 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-09 03:59:46] 2025-10-09 01:59:46,077 | INFO     | traces error code: 0
[2025-10-09 03:59:46] 2025-10-09 01:59:46,077 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-09 03:59:46] 2025-10-09 01:59:46,121 [wrapper] ==== pilot stdout END ====
[2025-10-09 03:59:46] 2025-10-09 01:59:46,124 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-09 03:59:46] 2025-10-09 01:59:46,126 [wrapper] pilotpid: 2256633
[2025-10-09 03:59:46] 2025-10-09 01:59:46,129 [wrapper] Pilot exit status: 0
[2025-10-09 03:59:46] 2025-10-09 01:59:46,135 [wrapper] pandaids: 6826450078
[2025-10-09 03:59:46] 2025-10-09 01:59:46,150 [wrapper] cleanup supervisor_pilot 2280038 2256634
[2025-10-09 03:59:46] 2025-10-09 01:59:46,152 [wrapper] Test setup, not cleaning
[2025-10-09 03:59:46] 2025-10-09 01:59:46,155 [wrapper] apfmon messages muted
[2025-10-09 03:59:46] 2025-10-09 01:59:46,158 [wrapper] ==== wrapper stdout END ====
[2025-10-09 03:59:46] 2025-10-09 01:59:46,160 [wrapper] ==== wrapper stderr END ====
[2025-10-09 03:59:46]  *** Error codes and diagnostics ***
[2025-10-09 03:59:46]     "exeErrorCode": 0,
[2025-10-09 03:59:46]     "exeErrorDiag": "",
[2025-10-09 03:59:46]     "pilotErrorCode": 0,
[2025-10-09 03:59:46]     "pilotErrorDiag": "",
[2025-10-09 03:59:46]  *** Listing of results directory ***
[2025-10-09 03:59:46] total 415928
[2025-10-09 03:59:46] -rw-r--r-- 1 boinc boinc    552446 Oct  1 15:46 pilot3.tar.gz
[2025-10-09 03:59:46] -rw-r--r-- 1 boinc boinc      5112 Oct  1 15:56 queuedata.json
[2025-10-09 03:59:46] -rwx------ 1 boinc boinc     36292 Oct  1 15:59 runpilot2-wrapper.sh
[2025-10-09 03:59:46] -rw-r--r-- 1 boinc boinc       100 Oct  9 01:23 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-09 03:59:46] -rwxr-xr-x 1 boinc boinc      7986 Oct  9 01:23 run_atlas
[2025-10-09 03:59:46] -rw-r--r-- 1 boinc boinc       105 Oct  9 01:23 job.xml
[2025-10-09 03:59:46] -rw-r--r-- 2 boinc boinc 221715311 Oct  9 01:23 EVNT.46373045._002806.pool.root.1
[2025-10-09 03:59:46] -rw-r--r-- 2 boinc boinc    565602 Oct  9 01:23 input.tar.gz
[2025-10-09 03:59:46] -rw-r--r-- 2 boinc boinc     15120 Oct  9 01:23 start_atlas.sh
[2025-10-09 03:59:46] drwxrwx--x 2 boinc boinc      4096 Oct  9 01:23 shared
[2025-10-09 03:59:46] -rw-r--r-- 1 boinc boinc         0 Oct  9 01:23 boinc_setup_complete
[2025-10-09 03:59:46] -rw-r--r-- 1 boinc boinc      6285 Oct  9 01:23 init_data.xml
[2025-10-09 03:59:46] -rw-r--r-- 1 boinc boinc         0 Oct  9 01:23 boinc_lockfile
[2025-10-09 03:59:46] -rw-r--r-- 1 boinc boinc      2538 Oct  9 01:23 pandaJob.out
[2025-10-09 03:59:46] -rw------- 1 boinc boinc    979298 Oct  9 01:23 agis_schedconf.cvmfs.json
[2025-10-09 03:59:46] -rw------- 1 boinc boinc   1560401 Oct  9 01:23 agis_ddmendpoints.agis.ALL.json
[2025-10-09 03:59:46] drwx------ 4 boinc boinc      4096 Oct  9 01:23 pilot3
[2025-10-09 03:59:46] -rw------- 1 boinc boinc        95 Oct  9 03:58 pilot_heartbeat.json
[2025-10-09 03:59:46] -rw------- 1 boinc boinc 197071119 Oct  9 03:58 HITS.46373048._082958.pool.root.1
[2025-10-09 03:59:46] -rw-r--r-- 1 boinc boinc       529 Oct  9 03:58 boinc_task_state.xml
[2025-10-09 03:59:46] -rw------- 1 boinc boinc      1017 Oct  9 03:58 memory_monitor_summary.json
[2025-10-09 03:59:46] -rw------- 1 boinc boinc    297312 Oct  9 03:58 log.46373048._082958.job.log.tgz.1
[2025-10-09 03:59:46] -rw------- 1 boinc boinc      7763 Oct  9 03:58 heartbeat.json
[2025-10-09 03:59:46] -rw-r--r-- 1 boinc boinc      8192 Oct  9 03:59 boinc_mmap_file
[2025-10-09 03:59:46] -rw-r--r-- 1 boinc boinc        27 Oct  9 03:59 wrapper_checkpoint.txt
[2025-10-09 03:59:46] -rw------- 1 boinc boinc      4628 Oct  9 03:59 pilotlog.txt
[2025-10-09 03:59:46] -rw------- 1 boinc boinc   1326298 Oct  9 03:59 log.46373048._082958.job.log.1
[2025-10-09 03:59:46] -rw------- 1 boinc boinc       357 Oct  9 03:59 output.list
[2025-10-09 03:59:46] -rw-r--r-- 1 boinc boinc       620 Oct  9 03:59 runtime_log
[2025-10-09 03:59:46] -rw------- 1 boinc boinc   1638400 Oct  9 03:59 result.tar.gz
[2025-10-09 03:59:46] -rw-r--r-- 1 boinc boinc      8792 Oct  9 03:59 runtime_log.err
[2025-10-09 03:59:46] -rw------- 1 boinc boinc       662 Oct  9 03:59 rUjNDmfXCO8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmT5BNDmMyMnfn.diag
[2025-10-09 03:59:46] -rw-r--r-- 1 boinc boinc     11759 Oct  9 03:59 stderr.txt
[2025-10-09 03:59:46] HITS file was successfully produced:
[2025-10-09 03:59:46] -rw------- 1 boinc boinc 197071119 Oct  9 03:58 shared/HITS.pool.root.1
[2025-10-09 03:59:46]  *** Contents of shared directory: ***
[2025-10-09 03:59:46] total 411156
[2025-10-09 03:59:46] -rw-r--r-- 2 boinc boinc 221715311 Oct  9 01:23 ATLAS.root_0
[2025-10-09 03:59:46] -rw-r--r-- 2 boinc boinc    565602 Oct  9 01:23 input.tar.gz
[2025-10-09 03:59:46] -rw-r--r-- 2 boinc boinc     15120 Oct  9 01:23 start_atlas.sh
[2025-10-09 03:59:46] -rw------- 1 boinc boinc 197071119 Oct  9 03:58 HITS.pool.root.1
[2025-10-09 03:59:46] -rw------- 1 boinc boinc   1638400 Oct  9 03:59 result.tar.gz
03:59:48 (2252930): run_atlas exited; CPU time 18254.221643
03:59:48 (2252930): called boinc_finish(0)

</stderr_txt>
]]>

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