Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
20:10:04 (3911865): wrapper (7.7.26015): starting
20:10:04 (3911865): wrapper: running run_atlas (--nthreads 8)
[2025-10-08 20:10:04] Arguments: --nthreads 8
[2025-10-08 20:10:04] Threads: 8
[2025-10-08 20:10:04] Checking for CVMFS
[2025-10-08 20:10:04] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-08 20:10:04] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-08 20:10:04] Running cvmfs_config stat atlas.cern.ch
[2025-10-08 20:10:05] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-08 20:10:05] 2.13.2.0 129418 104095 519624 151489 0 351 33726241 39288833 12413 16776704 0 96542352 99.378 162889745 31369 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-08 20:10:05] CVMFS is ok
[2025-10-08 20:10:05] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-08 20:10:05] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-08 20:10:05] Further information can be found at the LHC@home message board.
[2025-10-08 20:10:05] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-08 20:10:05] Checking for apptainer binary...
[2025-10-08 20:10:05] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-08 20:10:05] Running /usr/bin/apptainer --version
[2025-10-08 20:10:05] apptainer version 1.4.3-1.el9
[2025-10-08 20:10:05] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-08 20:10:05] c-211-23.aglt2.org
[2025-10-08 20:10:05] apptainer works
[2025-10-08 20:10:05] Set ATHENA_PROC_NUMBER=8
[2025-10-08 20:10:05] Set ATHENA_CORE_NUMBER=8
[2025-10-08 20:10:06] Starting ATLAS job with PandaID=6836331927
[2025-10-08 20:10:06] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-09 06:46:41]  *** The last 200 lines of the pilot log: ***
[2025-10-09 06:46:41] 2025-10-09 10:45:57,416 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-09 06:46:41] 2025-10-09 10:45:58,160 | INFO     | CPU arch script returned: x86-64-v2
[2025-10-09 06:46:41] 2025-10-09 10:45:58,274 | INFO     | found 20 cores (10 cores per socket, 2 sockets) HT, CPU MHz: 2899.9977750000003
[2025-10-09 06:46:41] 2025-10-09 10:45:58,349 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6836331927/memory_monitor_summary.json (trf name=prmon)
[2025-10-09 06:46:41] 2025-10-09 10:45:58,349 | INFO     | extracted standard info from prmon json
[2025-10-09 06:46:41] 2025-10-09 10:45:58,350 | INFO     | extracted standard memory fields from prmon json
[2025-10-09 06:46:41] 2025-10-09 10:45:58,350 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-09 06:46:41] 2025-10-09 10:45:58,385 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-09 06:46:41] 2025-10-09 10:45:58,385 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-09 06:46:41] 2025-10-09 10:45:58,541 | INFO     | fitting pss+swap vs Time
[2025-10-09 06:46:41] 2025-10-09 10:45:58,542 | INFO     | sum of square deviations: 74615651055.08849
[2025-10-09 06:46:41] 2025-10-09 10:45:58,648 | INFO     | sum of deviations: -21355769107.43725
[2025-10-09 06:46:41] 2025-10-09 10:45:58,648 | INFO     | mean x: 1759987716.4742765
[2025-10-09 06:46:41] 2025-10-09 10:45:58,649 | INFO     | mean y: 2517964.4726688103
[2025-10-09 06:46:41] 2025-10-09 10:45:58,649 | INFO     | -- intersect: 506244605.91416544
[2025-10-09 06:46:41] 2025-10-09 10:45:58,649 | INFO     | intersect: 506244605.91416544
[2025-10-09 06:46:41] 2025-10-09 10:45:58,696 | INFO     | chi2: 3.8907495752426944
[2025-10-09 06:46:41] 2025-10-09 10:45:58,697 | INFO     | sum of square deviations: 72830769852.80379
[2025-10-09 06:46:41] 2025-10-09 10:45:58,775 | INFO     | sum of deviations: 18277743625.147472
[2025-10-09 06:46:41] 2025-10-09 10:45:58,776 | INFO     | mean x: 1759987563.9821718
[2025-10-09 06:46:41] 2025-10-09 10:45:58,776 | INFO     | mean y: 2521328.740680713
[2025-10-09 06:46:41] 2025-10-09 10:45:58,776 | INFO     | -- intersect: -439168379.3720994
[2025-10-09 06:46:41] 2025-10-09 10:45:58,776 | INFO     | intersect: -439168379.3720994
[2025-10-09 06:46:41] 2025-10-09 10:45:58,777 | INFO     | chi2: 3.209995012044818
[2025-10-09 06:46:41] 2025-10-09 10:45:58,777 | INFO     | current chi2=3.209995012044818 (change=17.496745807789814 %)
[2025-10-09 06:46:41] 2025-10-09 10:45:58,778 | INFO     | right removable region: 616
[2025-10-09 06:46:41] 2025-10-09 10:45:58,779 | INFO     | sum of square deviations: 72830400192.80394
[2025-10-09 06:46:41] 2025-10-09 10:45:58,933 | INFO     | sum of deviations: -183892177361.75842
[2025-10-09 06:46:41] 2025-10-09 10:45:58,934 | INFO     | mean x: 1759987868.9821718
[2025-10-09 06:46:41] 2025-10-09 10:45:58,934 | INFO     | mean y: 2531829.4764991896
[2025-10-09 06:46:41] 2025-10-09 10:45:58,934 | INFO     | -- intersect: 4446390444.843425
[2025-10-09 06:46:41] 2025-10-09 10:45:58,934 | INFO     | intersect: 4446390444.843425
[2025-10-09 06:46:41] 2025-10-09 10:45:58,935 | INFO     | chi2: 1.2435711034617036
[2025-10-09 06:46:41] 2025-10-09 10:45:58,935 | INFO     | current chi2=1.2435711034617036 (change=68.0377500681438 %)
[2025-10-09 06:46:41] 2025-10-09 10:45:58,936 | INFO     | sum of square deviations: 71073847542.9413
[2025-10-09 06:46:41] 2025-10-09 10:45:59,166 | INFO     | sum of deviations: -209330472071.43134
[2025-10-09 06:46:41] 2025-10-09 10:45:59,166 | INFO     | mean x: 1759988021.490196
[2025-10-09 06:46:41] 2025-10-09 10:45:59,166 | INFO     | mean y: 2534032.094771242
[2025-10-09 06:46:41] 2025-10-09 10:45:59,167 | INFO     | -- intersect: 5186144264.480407
[2025-10-09 06:46:41] 2025-10-09 10:45:59,217 | INFO     | intersect: 5186144264.480407
[2025-10-09 06:46:41] 2025-10-09 10:45:59,218 | INFO     | chi2: 1.1451484634284514
[2025-10-09 06:46:41] 2025-10-09 10:45:59,218 | INFO     | current chi2=1.1451484634284514 (change=7.914516488785811 %)
[2025-10-09 06:46:41] 2025-10-09 10:45:59,219 | INFO     | left removable region: 20
[2025-10-09 06:46:41] 2025-10-09 10:45:59,219 | INFO     | sum of square deviations: 65643465754.83211
[2025-10-09 06:46:41] 2025-10-09 10:45:59,376 | INFO     | sum of deviations: -154073682720.12735
[2025-10-09 06:46:41] 2025-10-09 10:45:59,376 | INFO     | mean x: 1759988143.5167785
[2025-10-09 06:46:41] 2025-10-09 10:45:59,376 | INFO     | mean y: 2536272.912751678
[2025-10-09 06:46:41] 2025-10-09 10:45:59,377 | INFO     | -- intersect: 4133455499.9407525
[2025-10-09 06:46:41] 2025-10-09 10:45:59,377 | INFO     | intersect: 4133455499.9407525
[2025-10-09 06:46:41] 2025-10-09 10:45:59,378 | INFO     | chi2: 0.42046020345829804
[2025-10-09 06:46:41] 2025-10-09 10:45:59,378 | INFO     | -- intersect: 4133455499.9407525
[2025-10-09 06:46:41] 2025-10-09 10:45:59,378 | INFO     | current memory leak: -2.35 B/s (using 596 data points, chi2=0.42)
[2025-10-09 06:46:41] 2025-10-09 10:45:59,447 | INFO     | could have reported an average CPU frequency of 2899 MHz (24 samples)
[2025-10-09 06:46:41] 2025-10-09 10:45:59,447 | INFO     | ..............................
[2025-10-09 06:46:41] 2025-10-09 10:45:59,448 | INFO     | . Timing measurements:
[2025-10-09 06:46:41] 2025-10-09 10:45:59,448 | INFO     | . get job = 0 s
[2025-10-09 06:46:41] 2025-10-09 10:45:59,448 | INFO     | . initial setup = 4 s
[2025-10-09 06:46:41] 2025-10-09 10:45:59,448 | INFO     | . payload setup = 32 s
[2025-10-09 06:46:41] 2025-10-09 10:45:59,448 | INFO     | . stage-in = 0 s
[2025-10-09 06:46:41] 2025-10-09 10:45:59,448 | INFO     | . payload execution = 37946 s
[2025-10-09 06:46:41] 2025-10-09 10:45:59,448 | INFO     | . stage-out = 9 s
[2025-10-09 06:46:41] 2025-10-09 10:45:59,448 | INFO     | . log creation = 1 s
[2025-10-09 06:46:41] 2025-10-09 10:45:59,449 | INFO     | ..............................
[2025-10-09 06:46:41] 2025-10-09 10:46:01,133 | INFO     | 
[2025-10-09 06:46:41] 2025-10-09 10:46:01,133 | INFO     | job summary report
[2025-10-09 06:46:41] 2025-10-09 10:46:01,133 | INFO     | --------------------------------------------------
[2025-10-09 06:46:41] 2025-10-09 10:46:01,134 | INFO     | PanDA job id: 6836331927
[2025-10-09 06:46:41] 2025-10-09 10:46:01,134 | INFO     | task id: 46676269
[2025-10-09 06:46:41] 2025-10-09 10:46:01,134 | INFO     | errors: (none)
[2025-10-09 06:46:41] 2025-10-09 10:46:01,134 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-09 06:46:41] 2025-10-09 10:46:01,134 | INFO     | pilot state: finished 
[2025-10-09 06:46:41] 2025-10-09 10:46:01,134 | INFO     | transexitcode: 0
[2025-10-09 06:46:41] 2025-10-09 10:46:01,135 | INFO     | exeerrorcode: 0
[2025-10-09 06:46:41] 2025-10-09 10:46:01,135 | INFO     | exeerrordiag: 
[2025-10-09 06:46:41] 2025-10-09 10:46:01,135 | INFO     | exitcode: 0
[2025-10-09 06:46:41] 2025-10-09 10:46:01,135 | INFO     | exitmsg: OK
[2025-10-09 06:46:41] 2025-10-09 10:46:01,135 | INFO     | cpuconsumptiontime: 73109 s
[2025-10-09 06:46:41] 2025-10-09 10:46:01,135 | INFO     | nevents: 400
[2025-10-09 06:46:41] 2025-10-09 10:46:01,135 | INFO     | neventsw: 0
[2025-10-09 06:46:41] 2025-10-09 10:46:01,136 | INFO     | pid: 3936919
[2025-10-09 06:46:41] 2025-10-09 10:46:01,136 | INFO     | pgrp: 3936919
[2025-10-09 06:46:41] 2025-10-09 10:46:01,136 | INFO     | corecount: 8
[2025-10-09 06:46:41] 2025-10-09 10:46:01,136 | INFO     | event service: False
[2025-10-09 06:46:41] 2025-10-09 10:46:01,136 | INFO     | sizes: {0: 2348623, 1: 2348679, 2: 2348906, 3: 2348906, 14: 2348934, 24: 2349224, 25: 2349380, 37985: 2390125, 37986: 2390124, 37998: 2399178, 38004: 2399234, 3804
[2025-10-09 06:46:41] 2025-10-09 10:46:01,136 | INFO     | --------------------------------------------------
[2025-10-09 06:46:41] 2025-10-09 10:46:01,136 | INFO     | 
[2025-10-09 06:46:41] 2025-10-09 10:46:01,137 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-10-09 06:46:41] 2025-10-09 10:46:01,339 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-09 06:46:41] 2025-10-09 10:46:01,339 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-09 06:46:41] 2025-10-09 10:46:01,340 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-09 06:46:41] 2025-10-09 10:46:01,340 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-09 06:46:41] 2025-10-09 10:46:01,340 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-09 06:46:41] 2025-10-09 10:46:01,340 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-09 06:46:41] 2025-10-09 10:46:01,340 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-09 06:46:41] 2025-10-09 10:46:01,340 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-09 06:46:41] 2025-10-09 10:46:01,341 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-09 06:46:41] 2025-10-09 10:46:01,341 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-09 06:46:41] 2025-10-09 10:46:01,341 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-09 06:46:41] 2025-10-09 10:46:01,341 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-09 06:46:41] 2025-10-09 10:46:01,341 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-09 06:46:41] 2025-10-09 10:46:01,341 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-09 06:46:41] 2025-10-09 10:46:01,342 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-09 06:46:41] 2025-10-09 10:46:01,342 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-09 06:46:41] 2025-10-09 10:46:01,397 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-09 06:46:41] 2025-10-09 10:46:01,397 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-09 06:46:41] 2025-10-09 10:46:01,398 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-09 06:46:41] 2025-10-09 10:46:01,398 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-09 06:46:41] 2025-10-09 10:46:01,398 | INFO     | job 6836331927 has completed (purged errors)
[2025-10-09 06:46:41] 2025-10-09 10:46:01,398 | INFO     | overall cleanup function is called
[2025-10-09 06:46:41] 2025-10-09 10:46:02,527 | INFO     | --- collectZombieJob: --- 10, [3936919]
[2025-10-09 06:46:41] 2025-10-09 10:46:02,527 | INFO     | zombie collector waiting for pid 3936919
[2025-10-09 06:46:41] 2025-10-09 10:46:02,528 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-09 06:46:41] 2025-10-09 10:46:02,528 | INFO     | collected zombie processes
[2025-10-09 06:46:41] 2025-10-09 10:46:02,528 | INFO     | will attempt to kill all subprocesses of pid=3936919
[2025-10-09 06:46:41] 2025-10-09 10:46:05,378 | INFO     | PID=3922454 has CPU usage=3.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-09 06:46:41] 2025-10-09 10:46:05,378 | INFO     | .. there are 19 such processes running
[2025-10-09 06:46:41] 2025-10-09 10:46:08,286 | INFO     | process IDs to be killed: [3936919] (in reverse order)
[2025-10-09 06:46:41] 2025-10-09 10:46:09,609 | WARNING  | found no corresponding commands to process id(s)
[2025-10-09 06:46:41] 2025-10-09 10:46:09,617 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-09 06:46:41] 2025-10-09 10:46:09,723 | INFO     | did not find any defunct processes belonging to 3936919
[2025-10-09 06:46:41] 2025-10-09 10:46:09,804 | INFO     | did not find any defunct processes belonging to 3936919
[2025-10-09 06:46:41] 2025-10-09 10:46:09,805 | INFO     | ready for new job
[2025-10-09 06:46:41] 2025-10-09 10:46:09,830 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-09 06:46:41] 2025-10-09 10:46:09,833 | INFO     | ***************************************
[2025-10-09 06:46:41] 2025-10-09 10:46:09,834 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-09 06:46:41] 2025-10-09 10:46:09,834 | INFO     | ***************************************
[2025-10-09 06:46:41] 2025-10-09 10:46:09,840 | INFO     | 
[2025-10-09 06:46:41] 2025-10-09 10:46:09,842 | INFO     | architecture information:
[2025-10-09 06:46:41] 2025-10-09 10:46:09,883 | INFO     | executing command: cat /etc/os-release
[2025-10-09 06:46:41] 2025-10-09 10:46:10,092 | INFO     | cat /etc/os-release:
[2025-10-09 06:46:41] NAME="CentOS Linux"
[2025-10-09 06:46:41] VERSION="7 (Core)"
[2025-10-09 06:46:41] ID="centos"
[2025-10-09 06:46:41] ID_LIKE="rhel fedora"
[2025-10-09 06:46:41] VERSION_ID="7"
[2025-10-09 06:46:41] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-09 06:46:41] ANSI_COLOR="0;31"
[2025-10-09 06:46:41] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-09 06:46:41] HOME_URL="https://www.centos.org/"
[2025-10-09 06:46:41] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-09 06:46:41] 
[2025-10-09 06:46:41] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-09 06:46:41] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-09 06:46:41] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-09 06:46:41] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-09 06:46:41] 
[2025-10-09 06:46:41] 2025-10-09 10:46:10,093 | INFO     | ***************************************
[2025-10-09 06:46:41] 2025-10-09 10:46:10,596 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-10-09 06:46:41] 2025-10-09 10:46:10,790 | INFO     | sufficient remaining disk space (53282340864 B)
[2025-10-09 06:46:41] 2025-10-09 10:46:10,791 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-09 06:46:41] 2025-10-09 10:46:10,791 | INFO     | current server update state: UPDATING_FINAL
[2025-10-09 06:46:41] 2025-10-09 10:46:10,791 | INFO     | update_server=False
[2025-10-09 06:46:41] 2025-10-09 10:46:10,791 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-09 06:46:41] 2025-10-09 10:46:10,800 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-09 06:46:41] 2025-10-09 10:46:10,800 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-09 06:46:41] 2025-10-09 10:46:10,994 | INFO     | all data control threads have been joined
[2025-10-09 06:46:41] 2025-10-09 10:46:11,571 | INFO     | all job control threads have been joined
[2025-10-09 06:46:41] 2025-10-09 10:46:11,795 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-09 06:46:41] 2025-10-09 10:46:11,795 | INFO     | aborting loop
[2025-10-09 06:46:41] 2025-10-09 10:46:11,797 | INFO     | [job] retrieve thread has finished
[2025-10-09 06:46:41] 2025-10-09 10:46:11,807 | INFO     | [job] queue monitor thread has finished
[2025-10-09 06:46:41] 2025-10-09 10:46:11,879 | INFO     | all payload control threads have been joined
[2025-10-09 06:46:41] 2025-10-09 10:46:11,921 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-09 06:46:41] 2025-10-09 10:46:12,000 | INFO     | [data] control thread has finished
[2025-10-09 06:46:41] 2025-10-09 10:46:12,310 | INFO     | [payload] validate_pre thread has finished
[2025-10-09 06:46:41] 2025-10-09 10:46:12,555 | INFO     | [data] copytool_in thread has finished
[2025-10-09 06:46:41] 2025-10-09 10:46:12,595 | INFO     | [job] control thread has finished
[2025-10-09 06:46:41] 2025-10-09 10:46:12,714 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-09 06:46:41] 2025-10-09 10:46:12,856 | INFO     | [job] job monitor thread has finished
[2025-10-09 06:46:41] 2025-10-09 10:46:12,870 | INFO     | [payload] failed_post thread has finished
[2025-10-09 06:46:41] 2025-10-09 10:46:12,874 | INFO     | [job] validate thread has finished
[2025-10-09 06:46:41] 2025-10-09 10:46:12,887 | INFO     | [payload] execute_payloads thread has finished
[2025-10-09 06:46:41] 2025-10-09 10:46:12,889 | INFO     | [job] create_data_payload thread has finished
[2025-10-09 06:46:41] 2025-10-09 10:46:12,903 | INFO     | [payload] control thread has finished
[2025-10-09 06:46:41] 2025-10-09 10:46:13,075 | INFO     | [payload] validate_post thread has finished
[2025-10-09 06:46:41] 2025-10-09 10:46:13,961 | INFO     | [data] copytool_out thread has finished
[2025-10-09 06:46:41] 2025-10-09 10:46:14,827 | INFO     | [data] queue_monitor thread has finished
[2025-10-09 06:46:41] 2025-10-09 10:46:20,187 | INFO     | [monitor] cgroup control has ended
[2025-10-09 06:46:41] 2025-10-09 10:46:22,047 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140608066418496)>', '<ExcThread(monitor, started 140607716562688)>']
[2025-10-09 06:46:41] 2025-10-09 10:46:27,113 | INFO     | all workflow threads have been joined
[2025-10-09 06:46:41] 2025-10-09 10:46:27,113 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-09 06:46:41] 2025-10-09 10:46:27,114 | INFO     | traces error code: 0
[2025-10-09 06:46:41] 2025-10-09 10:46:27,114 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-09 06:46:41] 2025-10-09 10:46:38,215 | INFO     | PID=3922454 has CPU usage=2.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-09 06:46:41] 2025-10-09 10:46:38,215 | INFO     | .. there are 19 such processes running
[2025-10-09 06:46:41] 2025-10-09 10:46:38,216 | INFO     | found 0 job(s) in 20 queues
[2025-10-09 06:46:41] 2025-10-09 10:46:38,216 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-09 06:46:41] 2025-10-09 10:46:38,216 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-09 06:46:41] 2025-10-09 10:46:38,217 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-09 06:46:41] 2025-10-09 10:46:38,217 | INFO     | [monitor] control thread has ended
[2025-10-09 06:46:41] 2025-10-09 10:46:39,834 [wrapper] ==== pilot stdout END ====
[2025-10-09 06:46:41] 2025-10-09 10:46:39,890 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-09 06:46:41] 2025-10-09 10:46:39,899 [wrapper] pilotpid: 3922454
[2025-10-09 06:46:41] 2025-10-09 10:46:39,906 [wrapper] Pilot exit status: 0
[2025-10-09 06:46:41] 2025-10-09 10:46:40,067 [wrapper] pandaids: 6836331927
[2025-10-09 06:46:41] 2025-10-09 10:46:41,031 [wrapper] cleanup supervisor_pilot 2121667 3922455
[2025-10-09 06:46:41] 2025-10-09 10:46:41,135 [wrapper] Test setup, not cleaning
[2025-10-09 06:46:41] 2025-10-09 10:46:41,201 [wrapper] apfmon messages muted
[2025-10-09 06:46:41] 2025-10-09 10:46:41,243 [wrapper] ==== wrapper stdout END ====
[2025-10-09 06:46:41] 2025-10-09 10:46:41,248 [wrapper] ==== wrapper stderr END ====
[2025-10-09 06:46:41]  *** Error codes and diagnostics ***
[2025-10-09 06:46:41]     "exeErrorCode": 0,
[2025-10-09 06:46:41]     "exeErrorDiag": "",
[2025-10-09 06:46:41]     "pilotErrorCode": 0,
[2025-10-09 06:46:41]     "pilotErrorDiag": "",
[2025-10-09 06:46:41]  *** Listing of results directory ***
[2025-10-09 06:46:41] total 416088
[2025-10-09 06:46:41] -rw-r--r--. 1 boincer umatlas    557409 Oct  8 14:44 pilot3.tar.gz
[2025-10-09 06:46:41] -rwx------. 1 boincer umatlas     36292 Oct  8 14:44 runpilot2-wrapper.sh
[2025-10-09 06:46:41] -rw-r--r--. 1 boincer umatlas      5112 Oct  8 14:44 queuedata.json
[2025-10-09 06:46:41] -rw-r--r--. 1 boincer umatlas       100 Oct  8 20:10 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-09 06:46:41] -rwxr-xr-x. 1 boincer umatlas      7986 Oct  8 20:10 run_atlas
[2025-10-09 06:46:41] -rw-r--r--. 1 boincer umatlas       105 Oct  8 20:10 job.xml
[2025-10-09 06:46:41] -rw-r--r--. 2 boincer umatlas 221403808 Oct  8 20:10 EVNT.46676267._000253.pool.root.1
[2025-10-09 06:46:41] -rw-r--r--. 2 boincer umatlas     15120 Oct  8 20:10 start_atlas.sh
[2025-10-09 06:46:41] drwxrwx--x. 2 boincer umatlas      4096 Oct  8 20:10 shared
[2025-10-09 06:46:41] -rw-r--r--. 2 boincer umatlas    569674 Oct  8 20:10 input.tar.gz
[2025-10-09 06:46:41] -rw-r--r--. 1 boincer umatlas         0 Oct  8 20:10 boinc_lockfile
[2025-10-09 06:46:41] -rw-r--r--. 1 boincer umatlas      2547 Oct  8 20:10 pandaJob.out
[2025-10-09 06:46:41] -rw-------. 1 boincer umatlas    979298 Oct  8 20:11 agis_schedconf.cvmfs.json
[2025-10-09 06:46:41] drwx------. 5 boincer umatlas      4096 Oct  8 20:11 pilot3
[2025-10-09 06:46:41] -rw-r--r--. 1 boincer umatlas      6525 Oct  9 06:36 init_data.xml
[2025-10-09 06:46:41] -rw-------. 1 boincer umatlas 190716912 Oct  9 06:43 HITS.46676269._006369.pool.root.1
[2025-10-09 06:46:41] -rw-r--r--. 1 boincer umatlas       531 Oct  9 06:43 boinc_task_state.xml
[2025-10-09 06:46:41] -rw-------. 1 boincer umatlas      1043 Oct  9 06:44 memory_monitor_summary.json
[2025-10-09 06:46:41] -rw-------. 1 boincer umatlas   1560401 Oct  9 06:45 agis_ddmendpoints.agis.ALL.json
[2025-10-09 06:46:41] -rw-------. 1 boincer umatlas    710909 Oct  9 06:45 log.46676269._006369.job.log.tgz.1
[2025-10-09 06:46:41] -rw-------. 1 boincer umatlas      7822 Oct  9 06:45 heartbeat.json
[2025-10-09 06:46:41] -rw-r--r--. 1 boincer umatlas      8192 Oct  9 06:46 boinc_mmap_file
[2025-10-09 06:46:41] -rw-r--r--. 1 boincer umatlas        28 Oct  9 06:46 wrapper_checkpoint.txt
[2025-10-09 06:46:41] -rw-------. 1 boincer umatlas        95 Oct  9 06:46 pilot_heartbeat.json
[2025-10-09 06:46:41] -rw-------. 1 boincer umatlas       823 Oct  9 06:46 pilotlog.txt
[2025-10-09 06:46:41] -rw-------. 1 boincer umatlas   4316312 Oct  9 06:46 log.46676269._006369.job.log.1
[2025-10-09 06:46:41] -rw-------. 1 boincer umatlas       357 Oct  9 06:46 output.list
[2025-10-09 06:46:41] -rw-r--r--. 1 boincer umatlas       620 Oct  9 06:46 runtime_log
[2025-10-09 06:46:41] -rw-------. 1 boincer umatlas   5048320 Oct  9 06:46 result.tar.gz
[2025-10-09 06:46:41] -rw-r--r--. 1 boincer umatlas      8704 Oct  9 06:46 runtime_log.err
[2025-10-09 06:46:41] -rw-------. 1 boincer umatlas       658 Oct  9 06:46 0MlNDmAKoQ8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmB8XNDm2Kclbn.diag
[2025-10-09 06:46:41] -rw-r--r--. 1 boincer umatlas     21333 Oct  9 06:46 stderr.txt
[2025-10-09 06:46:41] HITS file was successfully produced:
[2025-10-09 06:46:41] -rw-------. 1 boincer umatlas 190716912 Oct  9 06:43 shared/HITS.pool.root.1
[2025-10-09 06:46:41]  *** Contents of shared directory: ***
[2025-10-09 06:46:41] total 407976
[2025-10-09 06:46:41] -rw-r--r--. 2 boincer umatlas 221403808 Oct  8 20:10 ATLAS.root_0
[2025-10-09 06:46:41] -rw-r--r--. 2 boincer umatlas     15120 Oct  8 20:10 start_atlas.sh
[2025-10-09 06:46:41] -rw-r--r--. 2 boincer umatlas    569674 Oct  8 20:10 input.tar.gz
[2025-10-09 06:46:41] -rw-------. 1 boincer umatlas 190716912 Oct  9 06:43 HITS.pool.root.1
[2025-10-09 06:46:41] -rw-------. 1 boincer umatlas   5048320 Oct  9 06:46 result.tar.gz
06:46:43 (3911865): run_atlas exited; CPU time 74615.286606
06:46:43 (3911865): called boinc_finish(0)

</stderr_txt>
]]>

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