Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
13:54:45 (15847): wrapper (7.7.26015): starting
13:54:45 (15847): wrapper: running run_atlas (--nthreads 12)
[2025-10-08 13:54:45] Arguments: --nthreads 12
[2025-10-08 13:54:45] Threads: 12
[2025-10-08 13:54:45] Checking for CVMFS
[2025-10-08 13:54:46] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-08 13:54:46] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-08 13:54:46] Running cvmfs_config stat atlas.cern.ch
[2025-10-08 13:54:46] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-08 13:54:46] 2.11.2.0 28623 210072 100276 151480 1 57 19621254 20275201 1 130560 4 102400312 99.984 11926795 11708 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-08 13:54:46] CVMFS is ok
[2025-10-08 13:54:46] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-08 13:54:46] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-08 13:54:46] Further information can be found at the LHC@home message board.
[2025-10-08 13:54:46] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-08 13:54:46] Checking for apptainer binary...
[2025-10-08 13:54:46] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-08 13:54:46] Running /usr/bin/apptainer --version
[2025-10-08 13:54:46] apptainer version 1.3.2-1.el7
[2025-10-08 13:54:46] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-08 13:54:47] c-205-20.aglt2.org
[2025-10-08 13:54:47] apptainer works
[2025-10-08 13:54:47] Set ATHENA_PROC_NUMBER=12
[2025-10-08 13:54:47] Set ATHENA_CORE_NUMBER=12
[2025-10-08 13:54:47] Starting ATLAS job with PandaID=6832673952
[2025-10-08 13:54:47] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-08 15:01:14]  *** The last 200 lines of the pilot log: ***
[2025-10-08 15:01:14]  status=None
[2025-10-08 15:01:14]  status_code=0
[2025-10-08 15:01:14]  storage_token=
[2025-10-08 15:01:14]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6832673952/log.46376905._111858.job.log.tgz.1
[2025-10-08 15:01:14]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/93/04/log.46376905._111858.job.log.tgz.1
[2025-10-08 15:01:14]  workdir=None
[2025-10-08 15:01:14] ]
[2025-10-08 15:01:14] 2025-10-08 19:00:08,453 | INFO     | transferring file log.46376905._111858.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6832673952/log.46376905._111858.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-10-08 15:01:14] 2025-10-08 19:00:08,453 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6832673952/log.46376905._111858.job.log.tgz.1 /tmp/boinchome/slots/0/log.46376905._111858.job
[2025-10-08 15:01:14] 2025-10-08 19:00:08,475 | INFO     | adding to output.list: log.46376905._111858.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/93/04/log.46376905._111858.job.log.tg
[2025-10-08 15:01:14] 2025-10-08 19:00:08,475 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-08 15:01:14] 2025-10-08 19:00:08,476 | INFO     | summary of transferred files:
[2025-10-08 15:01:14] 2025-10-08 19:00:08,476 | INFO     |  -- lfn=log.46376905._111858.job.log.tgz.1, status_code=0, status=transferred
[2025-10-08 15:01:14] 2025-10-08 19:00:08,476 | INFO     | stage-out finished correctly
[2025-10-08 15:01:14] 2025-10-08 19:00:09,231 | INFO     | time since job start (3906s) is within the limit (172800.0s)
[2025-10-08 15:01:14] 2025-10-08 19:00:10,101 | WARNING  | process 26007 can no longer be monitored (due to stat problems) - aborting
[2025-10-08 15:01:14] 2025-10-08 19:00:10,102 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6832673952/memory_monitor_summary.json (trf name=prmon)
[2025-10-08 15:01:14] 2025-10-08 19:00:10,189 | INFO     | number of running child processes to parent process 26007: 1
[2025-10-08 15:01:14] 2025-10-08 19:00:10,189 | INFO     | maximum number of monitored processes: 6
[2025-10-08 15:01:14] 2025-10-08 19:00:10,765 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-08 15:01:14] 2025-10-08 19:00:11,237 | INFO     | time since job start (3908s) is within the limit (172800.0s)
[2025-10-08 15:01:14] 2025-10-08 19:00:12,258 | INFO     | job 6832673952 has state=finished
[2025-10-08 15:01:14] 2025-10-08 19:00:12,259 | INFO     | preparing for final server update for job 6832673952 in state='finished'
[2025-10-08 15:01:14] 2025-10-08 19:00:12,259 | INFO     | this job has now completed (state=finished)
[2025-10-08 15:01:14] 2025-10-08 19:00:12,259 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-08 15:01:14] 2025-10-08 19:00:12,260 | INFO     | log transfer has been attempted: DONE
[2025-10-08 15:01:14] 2025-10-08 19:00:12,260 | INFO     | job 6832673952 has finished - writing final server update
[2025-10-08 15:01:14] 2025-10-08 19:00:12,260 | INFO     | total number of processed events: 400 (read)
[2025-10-08 15:01:14] 2025-10-08 19:00:12,261 | INFO     | executing command: lscpu
[2025-10-08 15:01:14] 2025-10-08 19:00:12,288 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-08 15:01:14] 2025-10-08 19:00:12,692 | INFO     | monitor loop #291: job 0:6832673952 is in state 'finished'
[2025-10-08 15:01:14] 2025-10-08 19:00:12,692 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-08 15:01:14] 2025-10-08 19:00:13,243 | INFO     | time since job start (3910s) is within the limit (172800.0s)
[2025-10-08 15:01:14] 2025-10-08 19:00:15,195 | INFO     | monitor loop #292: job 0:6832673952 is in state 'finished'
[2025-10-08 15:01:14] 2025-10-08 19:00:15,196 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-08 15:01:14] 2025-10-08 19:00:15,254 | INFO     | time since job start (3912s) is within the limit (172800.0s)
[2025-10-08 15:01:14] 2025-10-08 19:00:16,979 | INFO     | CPU arch script returned: x86-64-v2
[2025-10-08 15:01:14] 2025-10-08 19:00:16,983 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1695.8333333333333
[2025-10-08 15:01:14] 2025-10-08 19:00:16,986 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6832673952/memory_monitor_summary.json (trf name=prmon)
[2025-10-08 15:01:14] 2025-10-08 19:00:16,987 | INFO     | extracted standard info from prmon json
[2025-10-08 15:01:14] 2025-10-08 19:00:16,987 | INFO     | extracted standard memory fields from prmon json
[2025-10-08 15:01:14] 2025-10-08 19:00:16,987 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-08 15:01:14] 2025-10-08 19:00:16,987 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-08 15:01:14] 2025-10-08 19:00:16,988 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-08 15:01:14] 2025-10-08 19:00:16,989 | INFO     | fitting pss+swap vs Time
[2025-10-08 15:01:14] 2025-10-08 19:00:16,990 | INFO     | sum of square deviations: 57407588.0
[2025-10-08 15:01:14] 2025-10-08 19:00:16,990 | INFO     | sum of deviations: -981945304.0000005
[2025-10-08 15:01:14] 2025-10-08 19:00:16,990 | INFO     | mean x: 1759948145.0
[2025-10-08 15:01:14] 2025-10-08 19:00:16,990 | INFO     | mean y: 2680170.298245614
[2025-10-08 15:01:14] 2025-10-08 19:00:16,990 | INFO     | -- intersect: 30106240979.476677
[2025-10-08 15:01:14] 2025-10-08 19:00:16,990 | INFO     | intersect: 30106240979.476677
[2025-10-08 15:01:14] 2025-10-08 19:00:16,991 | INFO     | chi2: 0.026004733171706398
[2025-10-08 15:01:14] 2025-10-08 19:00:16,991 | INFO     | -- intersect: 30106240979.476677
[2025-10-08 15:01:14] 2025-10-08 19:00:16,991 | INFO     | current memory leak: -17.10 B/s (using 57 data points, chi2=0.03)
[2025-10-08 15:01:14] 2025-10-08 19:00:16,991 | INFO     | could have reported an average CPU frequency of 2030 MHz (6 samples)
[2025-10-08 15:01:14] 2025-10-08 19:00:16,991 | INFO     | ..............................
[2025-10-08 15:01:14] 2025-10-08 19:00:16,992 | INFO     | . Timing measurements:
[2025-10-08 15:01:14] 2025-10-08 19:00:16,992 | INFO     | . get job = 0 s
[2025-10-08 15:01:14] 2025-10-08 19:00:16,992 | INFO     | . initial setup = 2 s
[2025-10-08 15:01:14] 2025-10-08 19:00:16,992 | INFO     | . payload setup = 7 s
[2025-10-08 15:01:14] 2025-10-08 19:00:16,992 | INFO     | . stage-in = 0 s
[2025-10-08 15:01:14] 2025-10-08 19:00:16,992 | INFO     | . payload execution = 3878 s
[2025-10-08 15:01:14] 2025-10-08 19:00:16,992 | INFO     | . stage-out = 0 s
[2025-10-08 15:01:14] 2025-10-08 19:00:16,992 | INFO     | . log creation = 0 s
[2025-10-08 15:01:14] 2025-10-08 19:00:16,992 | INFO     | ..............................
[2025-10-08 15:01:14] 2025-10-08 19:00:17,076 | INFO     | 
[2025-10-08 15:01:14] 2025-10-08 19:00:17,076 | INFO     | job summary report
[2025-10-08 15:01:14] 2025-10-08 19:00:17,076 | INFO     | --------------------------------------------------
[2025-10-08 15:01:14] 2025-10-08 19:00:17,076 | INFO     | PanDA job id: 6832673952
[2025-10-08 15:01:14] 2025-10-08 19:00:17,076 | INFO     | task id: 46376905
[2025-10-08 15:01:14] 2025-10-08 19:00:17,077 | INFO     | errors: (none)
[2025-10-08 15:01:14] 2025-10-08 19:00:17,077 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-08 15:01:14] 2025-10-08 19:00:17,077 | INFO     | pilot state: finished 
[2025-10-08 15:01:14] 2025-10-08 19:00:17,077 | INFO     | transexitcode: 0
[2025-10-08 15:01:14] 2025-10-08 19:00:17,077 | INFO     | exeerrorcode: 0
[2025-10-08 15:01:14] 2025-10-08 19:00:17,077 | INFO     | exeerrordiag: 
[2025-10-08 15:01:14] 2025-10-08 19:00:17,078 | INFO     | exitcode: 0
[2025-10-08 15:01:14] 2025-10-08 19:00:17,078 | INFO     | exitmsg: OK
[2025-10-08 15:01:14] 2025-10-08 19:00:17,078 | INFO     | cpuconsumptiontime: 41739 s
[2025-10-08 15:01:14] 2025-10-08 19:00:17,078 | INFO     | nevents: 400
[2025-10-08 15:01:14] 2025-10-08 19:00:17,078 | INFO     | neventsw: 0
[2025-10-08 15:01:14] 2025-10-08 19:00:17,078 | INFO     | pid: 26007
[2025-10-08 15:01:14] 2025-10-08 19:00:17,078 | INFO     | pgrp: 26007
[2025-10-08 15:01:14] 2025-10-08 19:00:17,079 | INFO     | corecount: 12
[2025-10-08 15:01:14] 2025-10-08 19:00:17,079 | INFO     | event service: False
[2025-10-08 15:01:14] 2025-10-08 19:00:17,079 | INFO     | sizes: {0: 2348649, 1: 2348848, 6: 2349110, 11: 2349138, 3889: 2374920, 3890: 2383918, 3892: 2384102, 3898: 2384296}
[2025-10-08 15:01:14] 2025-10-08 19:00:17,079 | INFO     | --------------------------------------------------
[2025-10-08 15:01:14] 2025-10-08 19:00:17,079 | INFO     | 
[2025-10-08 15:01:14] 2025-10-08 19:00:17,079 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-10-08 15:01:14] 2025-10-08 19:00:17,101 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-08 15:01:14] 2025-10-08 19:00:17,101 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-08 15:01:14] 2025-10-08 19:00:17,101 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-08 15:01:14] 2025-10-08 19:00:17,101 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-08 15:01:14] 2025-10-08 19:00:17,101 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-08 15:01:14] 2025-10-08 19:00:17,102 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-08 15:01:14] 2025-10-08 19:00:17,102 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-08 15:01:14] 2025-10-08 19:00:17,102 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-08 15:01:14] 2025-10-08 19:00:17,102 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-08 15:01:14] 2025-10-08 19:00:17,102 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-08 15:01:14] 2025-10-08 19:00:17,102 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-08 15:01:14] 2025-10-08 19:00:17,103 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-08 15:01:14] 2025-10-08 19:00:17,103 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-08 15:01:14] 2025-10-08 19:00:17,103 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-08 15:01:14] 2025-10-08 19:00:17,103 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-08 15:01:14] 2025-10-08 19:00:17,103 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-08 15:01:14] 2025-10-08 19:00:17,103 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-08 15:01:14] 2025-10-08 19:00:17,103 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-08 15:01:14] 2025-10-08 19:00:17,104 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-08 15:01:14] 2025-10-08 19:00:17,104 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-08 15:01:14] 2025-10-08 19:00:17,104 | INFO     | job 6832673952 has completed (purged errors)
[2025-10-08 15:01:14] 2025-10-08 19:00:17,104 | INFO     | overall cleanup function is called
[2025-10-08 15:01:14] 2025-10-08 19:00:18,111 | INFO     | --- collectZombieJob: --- 10, [26007]
[2025-10-08 15:01:14] 2025-10-08 19:00:18,111 | INFO     | zombie collector waiting for pid 26007
[2025-10-08 15:01:14] 2025-10-08 19:00:18,111 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-08 15:01:14] 2025-10-08 19:00:18,111 | INFO     | collected zombie processes
[2025-10-08 15:01:14] 2025-10-08 19:00:18,111 | INFO     | will attempt to kill all subprocesses of pid=26007
[2025-10-08 15:01:14] 2025-10-08 19:00:18,204 | INFO     | process IDs to be killed: [26007] (in reverse order)
[2025-10-08 15:01:14] 2025-10-08 19:00:18,253 | WARNING  | found no corresponding commands to process id(s)
[2025-10-08 15:01:14] 2025-10-08 19:00:18,253 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-08 15:01:14] 2025-10-08 19:00:18,263 | INFO     | did not find any defunct processes belonging to 26007
[2025-10-08 15:01:14] 2025-10-08 19:00:18,265 | INFO     | did not find any defunct processes belonging to 26007
[2025-10-08 15:01:14] 2025-10-08 19:00:18,266 | INFO     | ready for new job
[2025-10-08 15:01:14] 2025-10-08 19:00:18,266 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-08 15:01:14] 2025-10-08 19:00:18,267 | INFO     | ***************************************
[2025-10-08 15:01:14] 2025-10-08 19:00:18,267 | INFO     | ***  PanDA Pilot version 3.10.5.57  ***
[2025-10-08 15:01:14] 2025-10-08 19:00:18,267 | INFO     | ***************************************
[2025-10-08 15:01:14] 2025-10-08 19:00:18,267 | INFO     | 
[2025-10-08 15:01:14] 2025-10-08 19:00:18,268 | INFO     | architecture information:
[2025-10-08 15:01:14] 2025-10-08 19:00:18,268 | INFO     | executing command: cat /etc/os-release
[2025-10-08 15:01:14] 2025-10-08 19:00:18,281 | INFO     | cat /etc/os-release:
[2025-10-08 15:01:14] NAME="CentOS Linux"
[2025-10-08 15:01:14] VERSION="7 (Core)"
[2025-10-08 15:01:14] ID="centos"
[2025-10-08 15:01:14] ID_LIKE="rhel fedora"
[2025-10-08 15:01:14] VERSION_ID="7"
[2025-10-08 15:01:14] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-08 15:01:14] ANSI_COLOR="0;31"
[2025-10-08 15:01:14] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-08 15:01:14] HOME_URL="https://www.centos.org/"
[2025-10-08 15:01:14] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-08 15:01:14] 
[2025-10-08 15:01:14] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-08 15:01:14] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-08 15:01:14] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-08 15:01:14] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-08 15:01:14] 
[2025-10-08 15:01:14] 2025-10-08 19:00:18,281 | INFO     | ***************************************
[2025-10-08 15:01:14] 2025-10-08 19:00:18,784 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-10-08 15:01:14] 2025-10-08 19:00:18,801 | INFO     | sufficient remaining disk space (29397876736 B)
[2025-10-08 15:01:14] 2025-10-08 19:00:18,801 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-08 15:01:14] 2025-10-08 19:00:18,802 | INFO     | current server update state: UPDATING_FINAL
[2025-10-08 15:01:14] 2025-10-08 19:00:18,802 | INFO     | update_server=False
[2025-10-08 15:01:14] 2025-10-08 19:00:18,802 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-08 15:01:14] 2025-10-08 19:00:18,802 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-08 15:01:14] 2025-10-08 19:00:18,803 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-08 15:01:14] 2025-10-08 19:00:18,803 | INFO     | aborting loop
[2025-10-08 15:01:14] 2025-10-08 19:00:19,074 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-08 15:01:14] 2025-10-08 19:00:19,557 | INFO     | all job control threads have been joined
[2025-10-08 15:01:14] 2025-10-08 19:00:19,598 | INFO     | all data control threads have been joined
[2025-10-08 15:01:14] 2025-10-08 19:00:19,703 | INFO     | all payload control threads have been joined
[2025-10-08 15:01:14] 2025-10-08 19:00:19,808 | INFO     | [job] retrieve thread has finished
[2025-10-08 15:01:14] 2025-10-08 19:00:19,809 | INFO     | [job] queue monitor thread has finished
[2025-10-08 15:01:14] 2025-10-08 19:00:19,809 | INFO     | [job] job monitor thread has finished
[2025-10-08 15:01:14] 2025-10-08 19:00:19,876 | INFO     | [data] copytool_in thread has finished
[2025-10-08 15:01:14] 2025-10-08 19:00:19,965 | INFO     | [payload] validate_post thread has finished
[2025-10-08 15:01:14] 2025-10-08 19:00:20,562 | INFO     | [job] control thread has finished
[2025-10-08 15:01:14] 2025-10-08 19:00:20,603 | INFO     | [data] control thread has finished
[2025-10-08 15:01:14] 2025-10-08 19:00:20,639 | INFO     | [job] validate thread has finished
[2025-10-08 15:01:14] 2025-10-08 19:00:20,682 | INFO     | [payload] execute_payloads thread has finished
[2025-10-08 15:01:14] 2025-10-08 19:00:20,693 | INFO     | [payload] failed_post thread has finished
[2025-10-08 15:01:14] 2025-10-08 19:00:20,708 | INFO     | [payload] control thread has finished
[2025-10-08 15:01:14] 2025-10-08 19:00:20,863 | INFO     | [job] create_data_payload thread has finished
[2025-10-08 15:01:14] 2025-10-08 19:00:21,079 | INFO     | [data] copytool_out thread has finished
[2025-10-08 15:01:14] 2025-10-08 19:00:21,146 | INFO     | [payload] validate_pre thread has finished
[2025-10-08 15:01:14] 2025-10-08 19:00:21,357 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-08 15:01:14] 2025-10-08 19:00:25,363 | INFO     | [data] queue_monitor thread has finished
[2025-10-08 15:01:14] 2025-10-08 19:00:29,638 | INFO     | job.realtimelogging is not enabled
[2025-10-08 15:01:14] 2025-10-08 19:00:30,643 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-08 15:01:14] 2025-10-08 19:00:48,457 | INFO     | PID=19535 has CPU usage=3.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-08 15:01:14] 2025-10-08 19:00:48,457 | INFO     | found 0 job(s) in 20 queues
[2025-10-08 15:01:14] 2025-10-08 19:00:48,457 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-08 15:01:14] 2025-10-08 19:00:48,457 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-08 15:01:14] 2025-10-08 19:01:08,657 | INFO     | [monitor] cgroup control has ended
[2025-10-08 15:01:14] 2025-10-08 19:01:08,729 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139757874558784)>', '<ExcThread(monitor, started 139757145282304)>']
[2025-10-08 15:01:14] 2025-10-08 19:01:09,561 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-08 15:01:14] 2025-10-08 19:01:09,561 | INFO     | [monitor] control thread has ended
[2025-10-08 15:01:14] 2025-10-08 19:01:13,740 | INFO     | all workflow threads have been joined
[2025-10-08 15:01:14] 2025-10-08 19:01:13,740 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-08 15:01:14] 2025-10-08 19:01:13,747 | INFO     | traces error code: 0
[2025-10-08 15:01:14] 2025-10-08 19:01:13,747 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-08 15:01:14] 2025-10-08 19:01:13,846 [wrapper] ==== pilot stdout END ====
[2025-10-08 15:01:14] 2025-10-08 19:01:13,849 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-08 15:01:14] 2025-10-08 19:01:13,853 [wrapper] pilotpid: 19535
[2025-10-08 15:01:14] 2025-10-08 19:01:13,857 [wrapper] Pilot exit status: 0
[2025-10-08 15:01:14] 2025-10-08 19:01:13,873 [wrapper] pandaids: 6832673952
[2025-10-08 15:01:14] 2025-10-08 19:01:13,920 [wrapper] cleanup supervisor_pilot  2260 19536
[2025-10-08 15:01:14] 2025-10-08 19:01:13,923 [wrapper] Test setup, not cleaning
[2025-10-08 15:01:14] 2025-10-08 19:01:13,927 [wrapper] apfmon messages muted
[2025-10-08 15:01:14] 2025-10-08 19:01:13,930 [wrapper] ==== wrapper stdout END ====
[2025-10-08 15:01:14] 2025-10-08 19:01:13,934 [wrapper] ==== wrapper stderr END ====
[2025-10-08 15:01:14]  *** Error codes and diagnostics ***
[2025-10-08 15:01:14]     "exeErrorCode": 0,
[2025-10-08 15:01:14]     "exeErrorDiag": "",
[2025-10-08 15:01:14]     "pilotErrorCode": 0,
[2025-10-08 15:01:14]     "pilotErrorDiag": "",
[2025-10-08 15:01:14]  *** Listing of results directory ***
[2025-10-08 15:01:14] total 389704
[2025-10-08 15:01:14] -rw-r--r-- 1 boincer umatlas    552446 Oct  6 08:50 pilot3.tar.gz
[2025-10-08 15:01:14] -rwx------ 1 boincer umatlas     36292 Oct  6 08:58 runpilot2-wrapper.sh
[2025-10-08 15:01:14] -rw-r--r-- 1 boincer umatlas      5112 Oct  6 08:58 queuedata.json
[2025-10-08 15:01:14] -rw-r--r-- 1 boincer umatlas       100 Oct  8 13:54 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-08 15:01:14] -rwxr-xr-x 1 boincer umatlas      7986 Oct  8 13:54 run_atlas
[2025-10-08 15:01:14] -rw-r--r-- 1 boincer umatlas       105 Oct  8 13:54 job.xml
[2025-10-08 15:01:14] -rw-r--r-- 2 boincer umatlas 212113819 Oct  8 13:54 EVNT.46376901._004148.pool.root.1
[2025-10-08 15:01:14] -rw-r--r-- 2 boincer umatlas     15120 Oct  8 13:54 start_atlas.sh
[2025-10-08 15:01:14] drwxrwx--x 2 boincer umatlas      4096 Oct  8 13:54 shared
[2025-10-08 15:01:14] -rw-r--r-- 2 boincer umatlas    565604 Oct  8 13:54 input.tar.gz
[2025-10-08 15:01:14] -rw-r--r-- 1 boincer umatlas         0 Oct  8 13:54 boinc_lockfile
[2025-10-08 15:01:14] -rw-r--r-- 1 boincer umatlas      2521 Oct  8 13:54 pandaJob.out
[2025-10-08 15:01:14] -rw------- 1 boincer umatlas    979295 Oct  8 13:55 agis_schedconf.cvmfs.json
[2025-10-08 15:01:14] -rw------- 1 boincer umatlas   1560401 Oct  8 13:55 agis_ddmendpoints.agis.ALL.json
[2025-10-08 15:01:14] drwx------ 4 boincer umatlas      4096 Oct  8 13:55 pilot3
[2025-10-08 15:01:14] -rw-r--r-- 1 boincer umatlas      5952 Oct  8 14:56 init_data.xml
[2025-10-08 15:01:14] -rw------- 1 boincer umatlas 181165452 Oct  8 14:59 HITS.46376905._111858.pool.root.1
[2025-10-08 15:01:14] -rw-r--r-- 1 boincer umatlas       529 Oct  8 14:59 boinc_task_state.xml
[2025-10-08 15:01:14] -rw------- 1 boincer umatlas        95 Oct  8 14:59 pilot_heartbeat.json
[2025-10-08 15:01:14] -rw------- 1 boincer umatlas      1044 Oct  8 15:00 memory_monitor_summary.json
[2025-10-08 15:01:14] -rw------- 1 boincer umatlas    375304 Oct  8 15:00 log.46376905._111858.job.log.tgz.1
[2025-10-08 15:01:14] -rw------- 1 boincer umatlas      7847 Oct  8 15:00 heartbeat.json
[2025-10-08 15:01:14] -rw-r--r-- 1 boincer umatlas      8192 Oct  8 15:00 boinc_mmap_file
[2025-10-08 15:01:14] -rw-r--r-- 1 boincer umatlas        27 Oct  8 15:00 wrapper_checkpoint.txt
[2025-10-08 15:01:14] -rw------- 1 boincer umatlas      4818 Oct  8 15:01 pilotlog.txt
[2025-10-08 15:01:14] -rw------- 1 boincer umatlas    572595 Oct  8 15:01 log.46376905._111858.job.log.1
[2025-10-08 15:01:14] -rw------- 1 boincer umatlas       357 Oct  8 15:01 output.list
[2025-10-08 15:01:14] -rw-r--r-- 1 boincer umatlas       620 Oct  8 15:01 runtime_log
[2025-10-08 15:01:14] -rw------- 1 boincer umatlas    962560 Oct  8 15:01 result.tar.gz
[2025-10-08 15:01:14] -rw------- 1 boincer umatlas       659 Oct  8 15:01 vJaNDmgyzP8n9Rq4apOajLDm4fhM0noT9bVof3QYDmHGJMDm0rau6n.diag
[2025-10-08 15:01:14] -rw-r--r-- 1 boincer umatlas      8705 Oct  8 15:01 runtime_log.err
[2025-10-08 15:01:14] -rw-r--r-- 1 boincer umatlas     22016 Oct  8 15:01 stderr.txt
[2025-10-08 15:01:14] HITS file was successfully produced:
[2025-10-08 15:01:14] -rw------- 1 boincer umatlas 181165452 Oct  8 14:59 shared/HITS.pool.root.1
[2025-10-08 15:01:14]  *** Contents of shared directory: ***
[2025-10-08 15:01:14] total 385580
[2025-10-08 15:01:14] -rw-r--r-- 2 boincer umatlas 212113819 Oct  8 13:54 ATLAS.root_0
[2025-10-08 15:01:14] -rw-r--r-- 2 boincer umatlas     15120 Oct  8 13:54 start_atlas.sh
[2025-10-08 15:01:14] -rw-r--r-- 2 boincer umatlas    565604 Oct  8 13:54 input.tar.gz
[2025-10-08 15:01:14] -rw------- 1 boincer umatlas 181165452 Oct  8 14:59 HITS.pool.root.1
[2025-10-08 15:01:14] -rw------- 1 boincer umatlas    962560 Oct  8 15:01 result.tar.gz
15:01:15 (15847): run_atlas exited; CPU time 41719.689154
15:01:15 (15847): called boinc_finish(0)

</stderr_txt>
]]>

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