Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
12:27:06 (29091): wrapper (7.7.26015): starting
12:27:06 (29091): wrapper: running run_atlas (--nthreads 8)
[2025-10-08 12:27:06] Arguments: --nthreads 8
[2025-10-08 12:27:06] Threads: 8
[2025-10-08 12:27:06] Checking for CVMFS
[2025-10-08 12:27:06] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-08 12:27:06] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-08 12:27:06] Running cvmfs_config stat atlas.cern.ch
[2025-10-08 12:27:06] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-08 12:27:06] 2.11.2.0 1598 210682 121596 151478 3 1 15305671 20275201 1 130560 1 210502749 99.992 11518510 11045 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-08 12:27:06] CVMFS is ok
[2025-10-08 12:27:06] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-08 12:27:06] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-08 12:27:06] Further information can be found at the LHC@home message board.
[2025-10-08 12:27:06] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-08 12:27:06] Checking for apptainer binary...
[2025-10-08 12:27:06] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-08 12:27:06] Running /usr/bin/apptainer --version
[2025-10-08 12:27:06] apptainer version 1.3.2-1.el7
[2025-10-08 12:27:06] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-08 12:27:07] c-205-36.aglt2.org
[2025-10-08 12:27:07] apptainer works
[2025-10-08 12:27:08] Set ATHENA_PROC_NUMBER=8
[2025-10-08 12:27:08] Set ATHENA_CORE_NUMBER=8
[2025-10-08 12:27:08] Starting ATLAS job with PandaID=6835984475
[2025-10-08 12:27:08] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-08 13:29:43]  *** The last 200 lines of the pilot log: ***
[2025-10-08 13:29:43]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-10-08 13:29:43]  replicas=None
[2025-10-08 13:29:43]  scope=mc23_13p6TeV
[2025-10-08 13:29:43]  status=None
[2025-10-08 13:29:43]  status_code=0
[2025-10-08 13:29:43]  storage_token=
[2025-10-08 13:29:43]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6835984475/log.46676269._005478.job.log.tgz.1
[2025-10-08 13:29:43]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/70/53/log.46676269._005478.job.log.tgz.1
[2025-10-08 13:29:43]  workdir=None
[2025-10-08 13:29:43] ]
[2025-10-08 13:29:43] 2025-10-08 17:29:06,021 | INFO     | transferring file log.46676269._005478.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6835984475/log.46676269._005478.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-10-08 13:29:43] 2025-10-08 17:29:06,021 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6835984475/log.46676269._005478.job.log.tgz.1 /tmp/boinchome/slots/0/log.46676269._005478.job
[2025-10-08 13:29:43] 2025-10-08 17:29:06,041 | INFO     | adding to output.list: log.46676269._005478.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/70/53/log.46676269._005478.job.log.tg
[2025-10-08 13:29:43] 2025-10-08 17:29:06,042 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-08 13:29:43] 2025-10-08 17:29:06,042 | INFO     | summary of transferred files:
[2025-10-08 13:29:43] 2025-10-08 17:29:06,042 | INFO     |  -- lfn=log.46676269._005478.job.log.tgz.1, status_code=0, status=transferred
[2025-10-08 13:29:43] 2025-10-08 17:29:06,042 | INFO     | stage-out finished correctly
[2025-10-08 13:29:43] 2025-10-08 17:29:06,091 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-08 13:29:43] 2025-10-08 17:29:06,173 | INFO     | job 6835984475 has state=finished
[2025-10-08 13:29:43] 2025-10-08 17:29:06,174 | INFO     | preparing for final server update for job 6835984475 in state='finished'
[2025-10-08 13:29:43] 2025-10-08 17:29:06,174 | INFO     | this job has now completed (state=finished)
[2025-10-08 13:29:43] 2025-10-08 17:29:06,174 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-08 13:29:43] 2025-10-08 17:29:06,175 | INFO     | log transfer has been attempted: DONE
[2025-10-08 13:29:43] 2025-10-08 17:29:06,175 | INFO     | job 6835984475 has finished - writing final server update
[2025-10-08 13:29:43] 2025-10-08 17:29:06,175 | INFO     | total number of processed events: 400 (read)
[2025-10-08 13:29:43] 2025-10-08 17:29:06,176 | INFO     | executing command: lscpu
[2025-10-08 13:29:43] 2025-10-08 17:29:06,208 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-08 13:29:43] 2025-10-08 17:29:07,510 | WARNING  | process 6892 can no longer be monitored (due to stat problems) - aborting
[2025-10-08 13:29:43] 2025-10-08 17:29:07,510 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6835984475/memory_monitor_summary.json (trf name=prmon)
[2025-10-08 13:29:43] 2025-10-08 17:29:07,530 | INFO     | time since job start (3705s) is within the limit (172800.0s)
[2025-10-08 13:29:43] 2025-10-08 17:29:07,582 | INFO     | number of running child processes to parent process 6892: 1
[2025-10-08 13:29:43] 2025-10-08 17:29:07,582 | INFO     | maximum number of monitored processes: 6
[2025-10-08 13:29:43] 2025-10-08 17:29:08,663 | INFO     | PID=327 has CPU usage=6.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -j
[2025-10-08 13:29:43] 2025-10-08 17:29:09,664 | INFO     | time since job start (3707s) is within the limit (172800.0s)
[2025-10-08 13:29:43] 2025-10-08 17:29:10,084 | INFO     | monitor loop #284: job 0:6835984475 is in state 'finished'
[2025-10-08 13:29:43] 2025-10-08 17:29:10,084 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-08 13:29:43] 2025-10-08 17:29:10,897 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-08 13:29:43] 2025-10-08 17:29:10,900 | INFO     | found 16 cores (8 cores per socket, 2 sockets) , CPU MHz: 1268.9663125
[2025-10-08 13:29:43] 2025-10-08 17:29:10,903 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6835984475/memory_monitor_summary.json (trf name=prmon)
[2025-10-08 13:29:43] 2025-10-08 17:29:10,903 | INFO     | extracted standard info from prmon json
[2025-10-08 13:29:43] 2025-10-08 17:29:10,904 | INFO     | extracted standard memory fields from prmon json
[2025-10-08 13:29:43] 2025-10-08 17:29:10,904 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-08 13:29:43] 2025-10-08 17:29:10,904 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-08 13:29:43] 2025-10-08 17:29:10,904 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-08 13:29:43] 2025-10-08 17:29:10,905 | INFO     | fitting pss+swap vs Time
[2025-10-08 13:29:43] 2025-10-08 17:29:10,905 | INFO     | sum of square deviations: 48810217.5
[2025-10-08 13:29:43] 2025-10-08 17:29:10,906 | INFO     | sum of deviations: -5320902632.000001
[2025-10-08 13:29:43] 2025-10-08 17:29:10,906 | INFO     | mean x: 1759942791.5
[2025-10-08 13:29:43] 2025-10-08 17:29:10,906 | INFO     | mean y: 2713375.4814814813
[2025-10-08 13:29:43] 2025-10-08 17:29:10,906 | INFO     | -- intersect: 191857712412.55356
[2025-10-08 13:29:43] 2025-10-08 17:29:10,906 | INFO     | intersect: 191857712412.55356
[2025-10-08 13:29:43] 2025-10-08 17:29:10,906 | INFO     | chi2: 0.051522732680231303
[2025-10-08 13:29:43] 2025-10-08 17:29:10,906 | INFO     | -- intersect: 191857712412.55356
[2025-10-08 13:29:43] 2025-10-08 17:29:10,906 | INFO     | current memory leak: -109.01 B/s (using 54 data points, chi2=0.05)
[2025-10-08 13:29:43] 2025-10-08 17:29:10,907 | INFO     | could have reported an average CPU frequency of 1468 MHz (6 samples)
[2025-10-08 13:29:43] 2025-10-08 17:29:10,907 | INFO     | ..............................
[2025-10-08 13:29:43] 2025-10-08 17:29:10,907 | INFO     | . Timing measurements:
[2025-10-08 13:29:43] 2025-10-08 17:29:10,907 | INFO     | . get job = 0 s
[2025-10-08 13:29:43] 2025-10-08 17:29:10,907 | INFO     | . initial setup = 2 s
[2025-10-08 13:29:43] 2025-10-08 17:29:10,907 | INFO     | . payload setup = 6 s
[2025-10-08 13:29:43] 2025-10-08 17:29:10,907 | INFO     | . stage-in = 0 s
[2025-10-08 13:29:43] 2025-10-08 17:29:10,907 | INFO     | . payload execution = 3676 s
[2025-10-08 13:29:43] 2025-10-08 17:29:10,907 | INFO     | . stage-out = 0 s
[2025-10-08 13:29:43] 2025-10-08 17:29:10,907 | INFO     | . log creation = 0 s
[2025-10-08 13:29:43] 2025-10-08 17:29:10,908 | INFO     | ..............................
[2025-10-08 13:29:43] 2025-10-08 17:29:10,966 | INFO     | 
[2025-10-08 13:29:43] 2025-10-08 17:29:10,967 | INFO     | job summary report
[2025-10-08 13:29:43] 2025-10-08 17:29:10,967 | INFO     | --------------------------------------------------
[2025-10-08 13:29:43] 2025-10-08 17:29:10,967 | INFO     | PanDA job id: 6835984475
[2025-10-08 13:29:43] 2025-10-08 17:29:10,967 | INFO     | task id: 46676269
[2025-10-08 13:29:43] 2025-10-08 17:29:10,967 | INFO     | errors: (none)
[2025-10-08 13:29:43] 2025-10-08 17:29:10,967 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-08 13:29:43] 2025-10-08 17:29:10,967 | INFO     | pilot state: finished 
[2025-10-08 13:29:43] 2025-10-08 17:29:10,968 | INFO     | transexitcode: 0
[2025-10-08 13:29:43] 2025-10-08 17:29:10,968 | INFO     | exeerrorcode: 0
[2025-10-08 13:29:43] 2025-10-08 17:29:10,968 | INFO     | exeerrordiag: 
[2025-10-08 13:29:43] 2025-10-08 17:29:10,968 | INFO     | exitcode: 0
[2025-10-08 13:29:43] 2025-10-08 17:29:10,968 | INFO     | exitmsg: OK
[2025-10-08 13:29:43] 2025-10-08 17:29:10,968 | INFO     | cpuconsumptiontime: 27016 s
[2025-10-08 13:29:43] 2025-10-08 17:29:10,968 | INFO     | nevents: 400
[2025-10-08 13:29:43] 2025-10-08 17:29:10,968 | INFO     | neventsw: 0
[2025-10-08 13:29:43] 2025-10-08 17:29:10,968 | INFO     | pid: 6892
[2025-10-08 13:29:43] 2025-10-08 17:29:10,969 | INFO     | pgrp: 6892
[2025-10-08 13:29:43] 2025-10-08 17:29:10,969 | INFO     | corecount: 8
[2025-10-08 13:29:43] 2025-10-08 17:29:10,969 | INFO     | event service: False
[2025-10-08 13:29:43] 2025-10-08 17:29:10,969 | INFO     | sizes: {0: 2348680, 1: 2348879, 5: 2349141, 11: 2349197, 3687: 2374907, 3688: 2384089, 3693: 2384227}
[2025-10-08 13:29:43] 2025-10-08 17:29:10,969 | INFO     | --------------------------------------------------
[2025-10-08 13:29:43] 2025-10-08 17:29:10,969 | INFO     | 
[2025-10-08 13:29:43] 2025-10-08 17:29:10,969 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-10-08 13:29:43] 2025-10-08 17:29:10,991 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-08 13:29:43] 2025-10-08 17:29:10,991 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-08 13:29:43] 2025-10-08 17:29:10,991 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-08 13:29:43] 2025-10-08 17:29:10,992 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-08 13:29:43] 2025-10-08 17:29:10,992 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-08 13:29:43] 2025-10-08 17:29:10,992 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-08 13:29:43] 2025-10-08 17:29:10,992 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-08 13:29:43] 2025-10-08 17:29:10,992 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-08 13:29:43] 2025-10-08 17:29:10,992 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-08 13:29:43] 2025-10-08 17:29:10,992 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-08 13:29:43] 2025-10-08 17:29:10,992 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-08 13:29:43] 2025-10-08 17:29:10,993 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-08 13:29:43] 2025-10-08 17:29:10,993 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-08 13:29:43] 2025-10-08 17:29:10,993 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-08 13:29:43] 2025-10-08 17:29:10,993 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-08 13:29:43] 2025-10-08 17:29:10,993 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-08 13:29:43] 2025-10-08 17:29:10,993 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-08 13:29:43] 2025-10-08 17:29:10,993 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-08 13:29:43] 2025-10-08 17:29:10,993 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-08 13:29:43] 2025-10-08 17:29:10,994 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-08 13:29:43] 2025-10-08 17:29:10,994 | INFO     | job 6835984475 has completed (purged errors)
[2025-10-08 13:29:43] 2025-10-08 17:29:10,994 | INFO     | overall cleanup function is called
[2025-10-08 13:29:43] 2025-10-08 17:29:12,002 | INFO     | --- collectZombieJob: --- 10, [6892]
[2025-10-08 13:29:43] 2025-10-08 17:29:12,002 | INFO     | zombie collector waiting for pid 6892
[2025-10-08 13:29:43] 2025-10-08 17:29:12,003 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-08 13:29:43] 2025-10-08 17:29:12,003 | INFO     | collected zombie processes
[2025-10-08 13:29:43] 2025-10-08 17:29:12,003 | INFO     | will attempt to kill all subprocesses of pid=6892
[2025-10-08 13:29:43] 2025-10-08 17:29:12,114 | INFO     | process IDs to be killed: [6892] (in reverse order)
[2025-10-08 13:29:43] 2025-10-08 17:29:12,170 | WARNING  | found no corresponding commands to process id(s)
[2025-10-08 13:29:43] 2025-10-08 17:29:12,171 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-08 13:29:43] 2025-10-08 17:29:12,175 | INFO     | did not find any defunct processes belonging to 6892
[2025-10-08 13:29:43] 2025-10-08 17:29:12,178 | INFO     | did not find any defunct processes belonging to 6892
[2025-10-08 13:29:43] 2025-10-08 17:29:12,179 | INFO     | ready for new job
[2025-10-08 13:29:43] 2025-10-08 17:29:12,179 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-08 13:29:43] 2025-10-08 17:29:12,181 | INFO     | ***************************************
[2025-10-08 13:29:43] 2025-10-08 17:29:12,181 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-08 13:29:43] 2025-10-08 17:29:12,181 | INFO     | ***************************************
[2025-10-08 13:29:43] 2025-10-08 17:29:12,181 | INFO     | 
[2025-10-08 13:29:43] 2025-10-08 17:29:12,182 | INFO     | architecture information:
[2025-10-08 13:29:43] 2025-10-08 17:29:12,183 | INFO     | executing command: cat /etc/os-release
[2025-10-08 13:29:43] 2025-10-08 17:29:12,198 | INFO     | cat /etc/os-release:
[2025-10-08 13:29:43] NAME="CentOS Linux"
[2025-10-08 13:29:43] VERSION="7 (Core)"
[2025-10-08 13:29:43] ID="centos"
[2025-10-08 13:29:43] ID_LIKE="rhel fedora"
[2025-10-08 13:29:43] VERSION_ID="7"
[2025-10-08 13:29:43] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-08 13:29:43] ANSI_COLOR="0;31"
[2025-10-08 13:29:43] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-08 13:29:43] HOME_URL="https://www.centos.org/"
[2025-10-08 13:29:43] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-08 13:29:43] 
[2025-10-08 13:29:43] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-08 13:29:43] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-08 13:29:43] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-08 13:29:43] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-08 13:29:43] 
[2025-10-08 13:29:43] 2025-10-08 17:29:12,198 | INFO     | ***************************************
[2025-10-08 13:29:43] 2025-10-08 17:29:12,701 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-10-08 13:29:43] 2025-10-08 17:29:12,718 | INFO     | sufficient remaining disk space (33273413632 B)
[2025-10-08 13:29:43] 2025-10-08 17:29:12,718 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-08 13:29:43] 2025-10-08 17:29:12,719 | INFO     | current server update state: UPDATING_FINAL
[2025-10-08 13:29:43] 2025-10-08 17:29:12,719 | INFO     | update_server=False
[2025-10-08 13:29:43] 2025-10-08 17:29:12,719 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-08 13:29:43] 2025-10-08 17:29:12,719 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-08 13:29:43] 2025-10-08 17:29:12,720 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-08 13:29:43] 2025-10-08 17:29:13,072 | INFO     | all job control threads have been joined
[2025-10-08 13:29:43] 2025-10-08 17:29:13,183 | INFO     | all data control threads have been joined
[2025-10-08 13:29:43] 2025-10-08 17:29:13,591 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-08 13:29:43] 2025-10-08 17:29:13,591 | INFO     | aborting loop
[2025-10-08 13:29:43] 2025-10-08 17:29:13,724 | INFO     | [job] retrieve thread has finished
[2025-10-08 13:29:43] 2025-10-08 17:29:13,725 | INFO     | [job] queue monitor thread has finished
[2025-10-08 13:29:43] 2025-10-08 17:29:13,785 | INFO     | [payload] failed_post thread has finished
[2025-10-08 13:29:43] 2025-10-08 17:29:14,035 | INFO     | [data] copytool_in thread has finished
[2025-10-08 13:29:43] 2025-10-08 17:29:14,078 | INFO     | [job] control thread has finished
[2025-10-08 13:29:43] 2025-10-08 17:29:14,102 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-08 13:29:43] 2025-10-08 17:29:14,184 | INFO     | all payload control threads have been joined
[2025-10-08 13:29:43] 2025-10-08 17:29:14,189 | INFO     | [data] control thread has finished
[2025-10-08 13:29:43] 2025-10-08 17:29:14,397 | INFO     | [payload] validate_post thread has finished
[2025-10-08 13:29:43] 2025-10-08 17:29:14,597 | INFO     | [job] job monitor thread has finished
[2025-10-08 13:29:43] 2025-10-08 17:29:14,773 | INFO     | [payload] execute_payloads thread has finished
[2025-10-08 13:29:43] 2025-10-08 17:29:14,822 | INFO     | [job] validate thread has finished
[2025-10-08 13:29:43] 2025-10-08 17:29:15,005 | INFO     | [payload] validate_pre thread has finished
[2025-10-08 13:29:43] 2025-10-08 17:29:15,063 | INFO     | [job] create_data_payload thread has finished
[2025-10-08 13:29:43] 2025-10-08 17:29:15,189 | INFO     | [payload] control thread has finished
[2025-10-08 13:29:43] 2025-10-08 17:29:16,108 | INFO     | [data] copytool_out thread has finished
[2025-10-08 13:29:43] 2025-10-08 17:29:16,726 | INFO     | [data] queue_monitor thread has finished
[2025-10-08 13:29:43] 2025-10-08 17:29:23,436 | INFO     | job.realtimelogging is not enabled
[2025-10-08 13:29:43] 2025-10-08 17:29:24,441 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-08 13:29:43] 2025-10-08 17:29:26,456 | INFO     | [monitor] cgroup control has ended
[2025-10-08 13:29:43] 2025-10-08 17:29:28,543 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140669614614336)>', '<ExcThread(monitor, started 140668877915904)>']
[2025-10-08 13:29:43] 2025-10-08 17:29:33,569 | INFO     | all workflow threads have been joined
[2025-10-08 13:29:43] 2025-10-08 17:29:33,569 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-08 13:29:43] 2025-10-08 17:29:33,570 | INFO     | traces error code: 0
[2025-10-08 13:29:43] 2025-10-08 17:29:33,570 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-08 13:29:43] 2025-10-08 17:29:42,888 | INFO     | PID=327 has CPU usage=1.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -j
[2025-10-08 13:29:43] 2025-10-08 17:29:42,889 | INFO     | found 0 job(s) in 20 queues
[2025-10-08 13:29:43] 2025-10-08 17:29:42,889 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-08 13:29:43] 2025-10-08 17:29:42,889 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-08 13:29:43] 2025-10-08 17:29:42,889 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-08 13:29:43] 2025-10-08 17:29:42,889 | INFO     | [monitor] control thread has ended
[2025-10-08 13:29:43] 2025-10-08 17:29:43,009 [wrapper] ==== pilot stdout END ====
[2025-10-08 13:29:43] 2025-10-08 17:29:43,013 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-08 13:29:43] 2025-10-08 17:29:43,017 [wrapper] pilotpid: 327
[2025-10-08 13:29:43] 2025-10-08 17:29:43,020 [wrapper] Pilot exit status: 0
[2025-10-08 13:29:43] 2025-10-08 17:29:43,035 [wrapper] pandaids: 6835984475
[2025-10-08 13:29:43] 2025-10-08 17:29:43,078 [wrapper] cleanup supervisor_pilot 29386 328
[2025-10-08 13:29:43] 2025-10-08 17:29:43,082 [wrapper] Test setup, not cleaning
[2025-10-08 13:29:43] 2025-10-08 17:29:43,086 [wrapper] apfmon messages muted
[2025-10-08 13:29:43] 2025-10-08 17:29:43,090 [wrapper] ==== wrapper stdout END ====
[2025-10-08 13:29:43] 2025-10-08 17:29:43,093 [wrapper] ==== wrapper stderr END ====
[2025-10-08 13:29:43]  *** Error codes and diagnostics ***
[2025-10-08 13:29:43]     "exeErrorCode": 0,
[2025-10-08 13:29:43]     "exeErrorDiag": "",
[2025-10-08 13:29:43]     "pilotErrorCode": 0,
[2025-10-08 13:29:43]     "pilotErrorDiag": "",
[2025-10-08 13:29:43]  *** Listing of results directory ***
[2025-10-08 13:29:43] total 413004
[2025-10-08 13:29:43] -rw-r--r-- 1 boincer umatlas    557409 Oct  8 06:04 pilot3.tar.gz
[2025-10-08 13:29:43] -rwx------ 1 boincer umatlas     36292 Oct  8 06:09 runpilot2-wrapper.sh
[2025-10-08 13:29:43] -rw-r--r-- 1 boincer umatlas      5112 Oct  8 06:09 queuedata.json
[2025-10-08 13:29:43] -rw-r--r-- 1 boincer umatlas       100 Oct  8 12:27 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-08 13:29:43] -rwxr-xr-x 1 boincer umatlas      7986 Oct  8 12:27 run_atlas
[2025-10-08 13:29:43] -rw-r--r-- 1 boincer umatlas       105 Oct  8 12:27 job.xml
[2025-10-08 13:29:43] -rw-r--r-- 2 boincer umatlas 221063518 Oct  8 12:27 EVNT.46676267._000220.pool.root.1
[2025-10-08 13:29:43] -rw-r--r-- 2 boincer umatlas     15120 Oct  8 12:27 start_atlas.sh
[2025-10-08 13:29:43] drwxrwx--x 2 boincer umatlas      4096 Oct  8 12:27 shared
[2025-10-08 13:29:43] -rw-r--r-- 2 boincer umatlas    569677 Oct  8 12:27 input.tar.gz
[2025-10-08 13:29:43] -rw-r--r-- 1 boincer umatlas         0 Oct  8 12:27 boinc_lockfile
[2025-10-08 13:29:43] -rw-r--r-- 1 boincer umatlas      2547 Oct  8 12:27 pandaJob.out
[2025-10-08 13:29:43] -rw------- 1 boincer umatlas    979303 Oct  8 12:27 agis_schedconf.cvmfs.json
[2025-10-08 13:29:43] -rw------- 1 boincer umatlas   1560401 Oct  8 12:27 agis_ddmendpoints.agis.ALL.json
[2025-10-08 13:29:43] drwx------ 5 boincer umatlas      4096 Oct  8 12:27 pilot3
[2025-10-08 13:29:43] -rw-r--r-- 1 boincer umatlas      6134 Oct  8 13:27 init_data.xml
[2025-10-08 13:29:43] -rw------- 1 boincer umatlas 196201233 Oct  8 13:28 HITS.46676269._005478.pool.root.1
[2025-10-08 13:29:43] -rw-r--r-- 1 boincer umatlas       530 Oct  8 13:28 boinc_task_state.xml
[2025-10-08 13:29:43] -rw------- 1 boincer umatlas        95 Oct  8 13:28 pilot_heartbeat.json
[2025-10-08 13:29:43] -rw------- 1 boincer umatlas      1040 Oct  8 13:29 memory_monitor_summary.json
[2025-10-08 13:29:43] -rw------- 1 boincer umatlas    325594 Oct  8 13:29 log.46676269._005478.job.log.tgz.1
[2025-10-08 13:29:43] -rw------- 1 boincer umatlas      7836 Oct  8 13:29 heartbeat.json
[2025-10-08 13:29:43] -rw-r--r-- 1 boincer umatlas      8192 Oct  8 13:29 boinc_mmap_file
[2025-10-08 13:29:43] -rw-r--r-- 1 boincer umatlas        27 Oct  8 13:29 wrapper_checkpoint.txt
[2025-10-08 13:29:43] -rw------- 1 boincer umatlas       743 Oct  8 13:29 pilotlog.txt
[2025-10-08 13:29:43] -rw------- 1 boincer umatlas    552249 Oct  8 13:29 log.46676269._005478.job.log.1
[2025-10-08 13:29:43] -rw------- 1 boincer umatlas       357 Oct  8 13:29 output.list
[2025-10-08 13:29:43] -rw-r--r-- 1 boincer umatlas       620 Oct  8 13:29 runtime_log
[2025-10-08 13:29:43] -rw------- 1 boincer umatlas    901120 Oct  8 13:29 result.tar.gz
[2025-10-08 13:29:43] -rw-r--r-- 1 boincer umatlas      8703 Oct  8 13:29 runtime_log.err
[2025-10-08 13:29:43] -rw------- 1 boincer umatlas       656 Oct  8 13:29 aeULDmiHgQ8n9Rq4apOajLDm4fhM0noT9bVof3QYDmmXMMDmrMQ5hn.diag
[2025-10-08 13:29:43] -rw-r--r-- 1 boincer umatlas     21931 Oct  8 13:29 stderr.txt
[2025-10-08 13:29:43] HITS file was successfully produced:
[2025-10-08 13:29:43] -rw------- 1 boincer umatlas 196201233 Oct  8 13:28 shared/HITS.pool.root.1
[2025-10-08 13:29:43]  *** Contents of shared directory: ***
[2025-10-08 13:29:43] total 408944
[2025-10-08 13:29:43] -rw-r--r-- 2 boincer umatlas 221063518 Oct  8 12:27 ATLAS.root_0
[2025-10-08 13:29:43] -rw-r--r-- 2 boincer umatlas     15120 Oct  8 12:27 start_atlas.sh
[2025-10-08 13:29:43] -rw-r--r-- 2 boincer umatlas    569677 Oct  8 12:27 input.tar.gz
[2025-10-08 13:29:43] -rw------- 1 boincer umatlas 196201233 Oct  8 13:28 HITS.pool.root.1
[2025-10-08 13:29:43] -rw------- 1 boincer umatlas    901120 Oct  8 13:29 result.tar.gz
13:29:44 (29091): run_atlas exited; CPU time 27010.185199
13:29:44 (29091): called boinc_finish(0)

</stderr_txt>
]]>

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