Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
17:27:20 (1868290): wrapper (7.7.26015): starting
17:27:20 (1868290): wrapper: running run_atlas (--nthreads 4)
[2025-10-08 17:27:20] Arguments: --nthreads 4
[2025-10-08 17:27:20] Threads: 4
[2025-10-08 17:27:20] Checking for CVMFS
[2025-10-08 17:27:21] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-08 17:27:22] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-08 17:27:22] Running cvmfs_config stat atlas.cern.ch
[2025-10-08 17:27:22] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-08 17:27:22] 2.9.2.0 1868414 0 30028 151477 3 1 25510558 36864000 0 130560 0 0 100.000 0 0 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-08 17:27:22] CVMFS is ok
[2025-10-08 17:27:22] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-08 17:27:22] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-08 17:27:22] Further information can be found at the LHC@home message board.
[2025-10-08 17:27:22] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-08 17:27:22] Checking for apptainer binary...
[2025-10-08 17:27:22] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-08 17:27:22] Running /usr/bin/apptainer --version
[2025-10-08 17:27:22] apptainer version 1.4.1-1.1
[2025-10-08 17:27:22] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-08 17:27:22] madmaxA277
[2025-10-08 17:27:22] apptainer works
[2025-10-08 17:27:22] Set ATHENA_PROC_NUMBER=4
[2025-10-08 17:27:22] Set ATHENA_CORE_NUMBER=4
[2025-10-08 17:27:22] Starting ATLAS job with PandaID=6826326692
[2025-10-08 17:27:22] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-08 18:56:45]  *** The last 200 lines of the pilot log: ***
[2025-10-08 18:56:45] 2025-10-08 16:55:52,777 | INFO     | process IDs to be killed: [1879132] (in reverse order)
[2025-10-08 18:56:45] 2025-10-08 16:55:52,810 | WARNING  | found no corresponding commands to process id(s)
[2025-10-08 18:56:45] 2025-10-08 16:55:52,810 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-08 18:56:45] 2025-10-08 16:55:52,812 | INFO     | did not find any defunct processes belonging to 1879132
[2025-10-08 18:56:45] 2025-10-08 16:55:52,813 | INFO     | did not find any defunct processes belonging to 1879132
[2025-10-08 18:56:45] 2025-10-08 16:55:52,813 | INFO     | ready for new job
[2025-10-08 18:56:45] 2025-10-08 16:55:52,813 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-08 18:56:45] 2025-10-08 16:55:52,814 | INFO     | ***************************************
[2025-10-08 18:56:45] 2025-10-08 16:55:52,814 | INFO     | ***  PanDA Pilot version 3.10.5.57  ***
[2025-10-08 18:56:45] 2025-10-08 16:55:52,814 | INFO     | ***************************************
[2025-10-08 18:56:45] 2025-10-08 16:55:52,814 | INFO     | 
[2025-10-08 18:56:45] 2025-10-08 16:55:52,815 | INFO     | architecture information:
[2025-10-08 18:56:45] 2025-10-08 16:55:52,815 | INFO     | executing command: cat /etc/os-release
[2025-10-08 18:56:45] 2025-10-08 16:55:52,828 | INFO     | cat /etc/os-release:
[2025-10-08 18:56:45] NAME="CentOS Linux"
[2025-10-08 18:56:45] VERSION="7 (Core)"
[2025-10-08 18:56:45] ID="centos"
[2025-10-08 18:56:45] ID_LIKE="rhel fedora"
[2025-10-08 18:56:45] VERSION_ID="7"
[2025-10-08 18:56:45] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-08 18:56:45] ANSI_COLOR="0;31"
[2025-10-08 18:56:45] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-08 18:56:45] HOME_URL="https://www.centos.org/"
[2025-10-08 18:56:45] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-08 18:56:45] 
[2025-10-08 18:56:45] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-08 18:56:45] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-08 18:56:45] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-08 18:56:45] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-08 18:56:45] 
[2025-10-08 18:56:45] 2025-10-08 16:55:52,828 | INFO     | ***************************************
[2025-10-08 18:56:45] 2025-10-08 16:55:53,332 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-08 18:56:45] 2025-10-08 16:55:53,348 | INFO     | sufficient remaining disk space (335954313216 B)
[2025-10-08 18:56:45] 2025-10-08 16:55:53,349 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-08 18:56:45] 2025-10-08 16:55:53,349 | INFO     | current server update state: UPDATING_FINAL
[2025-10-08 18:56:45] 2025-10-08 16:55:53,349 | INFO     | update_server=False
[2025-10-08 18:56:45] 2025-10-08 16:55:53,349 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-08 18:56:45] 2025-10-08 16:55:53,349 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-08 18:56:45] 2025-10-08 16:55:53,349 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-08 18:56:45] 2025-10-08 16:55:53,354 | INFO     | all payload control threads have been joined
[2025-10-08 18:56:45] 2025-10-08 16:55:53,500 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-08 18:56:45] 2025-10-08 16:55:53,500 | INFO     | aborting loop
[2025-10-08 18:56:45] 2025-10-08 16:55:54,167 | INFO     | all data control threads have been joined
[2025-10-08 18:56:45] 2025-10-08 16:55:54,355 | INFO     | [job] retrieve thread has finished
[2025-10-08 18:56:45] 2025-10-08 16:55:54,355 | INFO     | [job] queue monitor thread has finished
[2025-10-08 18:56:45] 2025-10-08 16:55:54,359 | INFO     | [payload] control thread has finished
[2025-10-08 18:56:45] 2025-10-08 16:55:54,427 | INFO     | [payload] validate_post thread has finished
[2025-10-08 18:56:45] 2025-10-08 16:55:54,506 | INFO     | [job] job monitor thread has finished
[2025-10-08 18:56:45] 2025-10-08 16:55:54,561 | INFO     | all job control threads have been joined
[2025-10-08 18:56:45] 2025-10-08 16:55:54,833 | INFO     | [payload] failed_post thread has finished
[2025-10-08 18:56:45] 2025-10-08 16:55:55,116 | INFO     | [job] validate thread has finished
[2025-10-08 18:56:45] 2025-10-08 16:55:55,173 | INFO     | [data] control thread has finished
[2025-10-08 18:56:45] 2025-10-08 16:55:55,192 | INFO     | [payload] execute_payloads thread has finished
[2025-10-08 18:56:45] 2025-10-08 16:55:55,245 | INFO     | [job] create_data_payload thread has finished
[2025-10-08 18:56:45] 2025-10-08 16:55:55,316 | INFO     | [payload] validate_pre thread has finished
[2025-10-08 18:56:45] 2025-10-08 16:55:55,355 | INFO     | [data] copytool_out thread has finished
[2025-10-08 18:56:45] 2025-10-08 16:55:55,560 | INFO     | [data] copytool_in thread has finished
[2025-10-08 18:56:45] 2025-10-08 16:55:55,567 | INFO     | [job] control thread has finished
[2025-10-08 18:56:45] 2025-10-08 16:55:56,244 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-08 18:56:45] 2025-10-08 16:56:00,251 | INFO     | [data] queue_monitor thread has finished
[2025-10-08 18:56:45] 2025-10-08 16:56:03,874 | INFO     | job.realtimelogging is not enabled
[2025-10-08 18:56:45] 2025-10-08 16:56:04,880 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-08 18:56:45] 2025-10-08 16:56:22,989 | INFO     | PID=1872543 has CPU usage=1.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-08 18:56:45] 2025-10-08 16:56:22,990 | INFO     | found 0 job(s) in 20 queues
[2025-10-08 18:56:45] 2025-10-08 16:56:22,990 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-08 18:56:45] 2025-10-08 16:56:22,990 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-08 18:56:45] 2025-10-08 16:56:38,872 | INFO     | [monitor] cgroup control has ended
[2025-10-08 18:56:45] 2025-10-08 16:56:40,047 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140208333604672)>', '<ExcThread(monitor, started 140207831627520)>']
[2025-10-08 18:56:45] 2025-10-08 16:56:40,077 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-08 18:56:45] 2025-10-08 16:56:40,077 | INFO     | [monitor] control thread has ended
[2025-10-08 18:56:45] 2025-10-08 16:56:45,073 | INFO     | all workflow threads have been joined
[2025-10-08 18:56:45] 2025-10-08 16:56:45,073 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-08 18:56:45] 2025-10-08 16:56:45,073 | INFO     | traces error code: 0
[2025-10-08 18:56:45] 2025-10-08 16:56:45,074 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-08 18:56:45] 2025-10-08 16:56:45,153 [wrapper] ==== pilot stdout END ====
[2025-10-08 18:56:45] 2025-10-08 16:56:45,157 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-08 18:56:45] 2025-10-08 16:56:45,161 [wrapper] pilotpid: 1872543
[2025-10-08 18:56:45] 2025-10-08 16:56:45,165 [wrapper] Pilot exit status: 0
[2025-10-08 18:56:45] 2025-10-08 16:56:45,176 [wrapper] pandaids: 6826326692
[2025-10-08 18:56:45] 2025-10-08 16:56:45,199 [wrapper] cleanup supervisor_pilot 1891720 1872544
[2025-10-08 18:56:45] 2025-10-08 16:56:45,202 [wrapper] Test setup, not cleaning
[2025-10-08 18:56:45] 2025-10-08 16:56:45,206 [wrapper] apfmon messages muted
[2025-10-08 18:56:45] 2025-10-08 16:56:45,209 [wrapper] ==== wrapper stdout END ====
[2025-10-08 18:56:45] 2025-10-08 16:56:45,213 [wrapper] ==== wrapper stderr END ====
[2025-10-08 18:56:45]  *** Error codes and diagnostics ***
[2025-10-08 18:56:45]     "exeErrorCode": 0,
[2025-10-08 18:56:45]     "exeErrorDiag": "",
[2025-10-08 18:56:45]     "pilotErrorCode": 0,
[2025-10-08 18:56:45]     "pilotErrorDiag": "",
[2025-10-08 18:56:45]  *** Listing of results directory ***
[2025-10-08 18:56:45] total 410616
[2025-10-08 18:56:45] -rw-r--r-- 1 boinc boinc    552446 Oct  1 06:22 pilot3.tar.gz
[2025-10-08 18:56:45] -rw-r--r-- 1 boinc boinc      5112 Oct  1 07:02 queuedata.json
[2025-10-08 18:56:45] -rwx------ 1 boinc boinc     36292 Oct  1 07:03 runpilot2-wrapper.sh
[2025-10-08 18:56:45] -rw-r--r-- 1 boinc boinc       100 Oct  8 17:27 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-08 18:56:45] -rwxr-xr-x 1 boinc boinc      7986 Oct  8 17:27 run_atlas
[2025-10-08 18:56:45] -rw-r--r-- 1 boinc boinc       105 Oct  8 17:27 job.xml
[2025-10-08 18:56:45] -rw-r--r-- 2 boinc boinc 218529205 Oct  8 17:27 EVNT.46373045._002584.pool.root.1
[2025-10-08 18:56:45] -rw-r--r-- 2 boinc boinc    565605 Oct  8 17:27 input.tar.gz
[2025-10-08 18:56:45] -rw-r--r-- 2 boinc boinc     15120 Oct  8 17:27 start_atlas.sh
[2025-10-08 18:56:45] drwxrwx--x 2 boinc boinc      4096 Oct  8 17:27 shared
[2025-10-08 18:56:45] -rw-r--r-- 1 boinc boinc         0 Oct  8 17:27 boinc_setup_complete
[2025-10-08 18:56:45] -rw-r--r-- 1 boinc boinc      6373 Oct  8 17:27 init_data.xml
[2025-10-08 18:56:45] -rw-r--r-- 1 boinc boinc         0 Oct  8 17:27 boinc_lockfile
[2025-10-08 18:56:45] -rw-r--r-- 1 boinc boinc      2537 Oct  8 17:27 pandaJob.out
[2025-10-08 18:56:45] -rw------- 1 boinc boinc    979295 Oct  8 17:27 agis_schedconf.cvmfs.json
[2025-10-08 18:56:45] -rw------- 1 boinc boinc   1560401 Oct  8 17:27 agis_ddmendpoints.agis.ALL.json
[2025-10-08 18:56:45] drwx------ 4 boinc boinc      4096 Oct  8 17:27 pilot3
[2025-10-08 18:56:45] -rw------- 1 boinc boinc 195942302 Oct  8 18:55 HITS.46373048._077356.pool.root.1
[2025-10-08 18:56:45] -rw-r--r-- 1 boinc boinc       529 Oct  8 18:55 boinc_task_state.xml
[2025-10-08 18:56:45] -rw------- 1 boinc boinc      1017 Oct  8 18:55 memory_monitor_summary.json
[2025-10-08 18:56:45] -rw------- 1 boinc boinc    288386 Oct  8 18:55 log.46373048._077356.job.log.tgz.1
[2025-10-08 18:56:45] -rw------- 1 boinc boinc      7784 Oct  8 18:55 heartbeat.json
[2025-10-08 18:56:45] -rw------- 1 boinc boinc        95 Oct  8 18:56 pilot_heartbeat.json
[2025-10-08 18:56:45] -rw-r--r-- 1 boinc boinc        27 Oct  8 18:56 wrapper_checkpoint.txt
[2025-10-08 18:56:45] -rw-r--r-- 1 boinc boinc      8192 Oct  8 18:56 boinc_mmap_file
[2025-10-08 18:56:45] -rw------- 1 boinc boinc      4824 Oct  8 18:56 pilotlog.txt
[2025-10-08 18:56:45] -rw------- 1 boinc boinc    770251 Oct  8 18:56 log.46373048._077356.job.log.1
[2025-10-08 18:56:45] -rw------- 1 boinc boinc       357 Oct  8 18:56 output.list
[2025-10-08 18:56:45] -rw-r--r-- 1 boinc boinc       620 Oct  8 18:56 runtime_log
[2025-10-08 18:56:45] -rw------- 1 boinc boinc   1075200 Oct  8 18:56 result.tar.gz
[2025-10-08 18:56:45] -rw-r--r-- 1 boinc boinc      8797 Oct  8 18:56 runtime_log.err
[2025-10-08 18:56:45] -rw------- 1 boinc boinc       663 Oct  8 18:56 ObBNDmhA4N8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm89ANDm9ePgVn.diag
[2025-10-08 18:56:45] -rw-r--r-- 1 boinc boinc     10165 Oct  8 18:56 stderr.txt
[2025-10-08 18:56:45] HITS file was successfully produced:
[2025-10-08 18:56:45] -rw------- 1 boinc boinc 195942302 Oct  8 18:55 shared/HITS.pool.root.1
[2025-10-08 18:56:45]  *** Contents of shared directory: ***
[2025-10-08 18:56:45] total 406392
[2025-10-08 18:56:45] -rw-r--r-- 2 boinc boinc 218529205 Oct  8 17:27 ATLAS.root_0
[2025-10-08 18:56:45] -rw-r--r-- 2 boinc boinc    565605 Oct  8 17:27 input.tar.gz
[2025-10-08 18:56:45] -rw-r--r-- 2 boinc boinc     15120 Oct  8 17:27 start_atlas.sh
[2025-10-08 18:56:45] -rw------- 1 boinc boinc 195942302 Oct  8 18:55 HITS.pool.root.1
[2025-10-08 18:56:45] -rw------- 1 boinc boinc   1075200 Oct  8 18:56 result.tar.gz
18:56:46 (1868290): run_atlas exited; CPU time 20209.026630
18:56:46 (1868290): called boinc_finish(0)

</stderr_txt>
]]>

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