Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
09:31:16 (902990): wrapper (7.7.26015): starting
09:31:16 (902990): wrapper: running run_atlas (--nthreads 8)
[2025-10-08 09:31:16] Arguments: --nthreads 8
[2025-10-08 09:31:16] Threads: 8
[2025-10-08 09:31:16] Checking for CVMFS
[2025-10-08 09:31:17] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-08 09:31:17] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-08 09:31:17] Running cvmfs_config stat atlas.cern.ch
[2025-10-08 09:31:18] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-08 09:31:18] 2.13.2.0 5077 107121 414920 151473 2 386 40777044 40960000 10958 16776704 1 170454416 99.669 146382713 37683 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-08 09:31:18] CVMFS is ok
[2025-10-08 09:31:18] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-08 09:31:18] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-08 09:31:18] Further information can be found at the LHC@home message board.
[2025-10-08 09:31:18] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-08 09:31:18] Checking for apptainer binary...
[2025-10-08 09:31:18] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-08 09:31:18] Running /usr/bin/apptainer --version
[2025-10-08 09:31:18] apptainer version 1.4.3-1.el9
[2025-10-08 09:31:18] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-08 09:31:19] c-206-39.aglt2.org
[2025-10-08 09:31:19] apptainer works
[2025-10-08 09:31:19] Set ATHENA_PROC_NUMBER=8
[2025-10-08 09:31:19] Set ATHENA_CORE_NUMBER=8
[2025-10-08 09:31:19] Starting ATLAS job with PandaID=6836115513
[2025-10-08 09:31:19] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-08 11:12:05]  *** The last 200 lines of the pilot log: ***
[2025-10-08 11:12:05]  workdir=None
[2025-10-08 11:12:05] ]
[2025-10-08 11:12:05] 2025-10-08 15:11:20,727 | INFO     | transferring file log.46376905._135874.job.log.tgz.1 from /tmp/boinchome/slots/1/PanDA_Pilot-6836115513/log.46376905._135874.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-10-08 11:12:05] 2025-10-08 15:11:20,727 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/1/PanDA_Pilot-6836115513/log.46376905._135874.job.log.tgz.1 /tmp/boinchome/slots/1/log.46376905._135874.job
[2025-10-08 11:12:05] 2025-10-08 15:11:20,785 | INFO     | adding to output.list: log.46376905._135874.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/3a/7d/log.46376905._135874.job.log.tg
[2025-10-08 11:12:05] 2025-10-08 15:11:20,786 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-08 11:12:05] 2025-10-08 15:11:20,786 | INFO     | summary of transferred files:
[2025-10-08 11:12:05] 2025-10-08 15:11:20,786 | INFO     |  -- lfn=log.46376905._135874.job.log.tgz.1, status_code=0, status=transferred
[2025-10-08 11:12:05] 2025-10-08 15:11:20,786 | INFO     | stage-out finished correctly
[2025-10-08 11:12:05] 2025-10-08 15:11:20,922 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-08 11:12:05] 2025-10-08 15:11:20,976 | WARNING  | process 915942 can no longer be monitored (due to stat problems) - aborting
[2025-10-08 11:12:05] 2025-10-08 15:11:20,976 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6836115513/memory_monitor_summary.json (trf name=prmon)
[2025-10-08 11:12:05] 2025-10-08 15:11:21,537 | INFO     | number of running child processes to parent process 915942: 1
[2025-10-08 11:12:05] 2025-10-08 15:11:21,537 | INFO     | maximum number of monitored processes: 6
[2025-10-08 11:12:05] 2025-10-08 15:11:22,290 | INFO     | time since job start (5936s) is within the limit (172800.0s)
[2025-10-08 11:12:05] 2025-10-08 15:11:23,628 | INFO     | job 6836115513 has state=finished
[2025-10-08 11:12:05] 2025-10-08 15:11:23,628 | INFO     | preparing for final server update for job 6836115513 in state='finished'
[2025-10-08 11:12:05] 2025-10-08 15:11:23,629 | INFO     | this job has now completed (state=finished)
[2025-10-08 11:12:05] 2025-10-08 15:11:23,629 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-08 11:12:05] 2025-10-08 15:11:23,629 | INFO     | log transfer has been attempted: DONE
[2025-10-08 11:12:05] 2025-10-08 15:11:23,630 | INFO     | job 6836115513 has finished - writing final server update
[2025-10-08 11:12:05] 2025-10-08 15:11:23,630 | INFO     | total number of processed events: 400 (read)
[2025-10-08 11:12:05] 2025-10-08 15:11:23,643 | INFO     | executing command: lscpu
[2025-10-08 11:12:05] 2025-10-08 15:11:23,788 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-08 11:12:05] 2025-10-08 15:11:24,042 | INFO     | monitor loop #423: job 0:6836115513 is in state 'finished'
[2025-10-08 11:12:05] 2025-10-08 15:11:24,042 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-08 11:12:05] 2025-10-08 15:11:24,297 | INFO     | time since job start (5938s) is within the limit (172800.0s)
[2025-10-08 11:12:05] 2025-10-08 15:11:26,307 | INFO     | time since job start (5940s) is within the limit (172800.0s)
[2025-10-08 11:12:05] 2025-10-08 15:11:26,551 | INFO     | monitor loop #424: job 0:6836115513 is in state 'finished'
[2025-10-08 11:12:05] 2025-10-08 15:11:26,551 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-08 11:12:05] 2025-10-08 15:11:28,316 | INFO     | time since job start (5942s) is within the limit (172800.0s)
[2025-10-08 11:12:05] 2025-10-08 15:11:29,055 | INFO     | monitor loop #425: job 0:6836115513 is in state 'finished'
[2025-10-08 11:12:05] 2025-10-08 15:11:29,056 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-08 11:12:05] 2025-10-08 15:11:29,898 | INFO     | PID=908124 has CPU usage=9.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-10-08 11:12:05] 2025-10-08 15:11:29,898 | INFO     | .. there are 9 such processes running
[2025-10-08 11:12:05] 2025-10-08 15:11:30,899 | INFO     | time since job start (5944s) is within the limit (172800.0s)
[2025-10-08 11:12:05] 2025-10-08 15:11:31,035 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-08 11:12:05] 2025-10-08 15:11:31,068 | INFO     | found 32 cores (16 cores per socket, 2 sockets) HT, CPU MHz: 3246.7111249999994
[2025-10-08 11:12:05] 2025-10-08 15:11:31,078 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6836115513/memory_monitor_summary.json (trf name=prmon)
[2025-10-08 11:12:05] 2025-10-08 15:11:31,079 | INFO     | extracted standard info from prmon json
[2025-10-08 11:12:05] 2025-10-08 15:11:31,080 | INFO     | extracted standard memory fields from prmon json
[2025-10-08 11:12:05] 2025-10-08 15:11:31,080 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-08 11:12:05] 2025-10-08 15:11:31,080 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-08 11:12:05] 2025-10-08 15:11:31,080 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-08 11:12:05] 2025-10-08 15:11:31,082 | INFO     | fitting pss+swap vs Time
[2025-10-08 11:12:05] 2025-10-08 15:11:31,082 | INFO     | sum of square deviations: 226035237.15555575
[2025-10-08 11:12:05] 2025-10-08 15:11:31,083 | INFO     | sum of deviations: -17441442395.399998
[2025-10-08 11:12:05] 2025-10-08 15:11:31,083 | INFO     | mean x: 1759933424.6222222
[2025-10-08 11:12:05] 2025-10-08 15:11:31,083 | INFO     | mean y: 2658217.9
[2025-10-08 11:12:05] 2025-10-08 15:11:31,083 | INFO     | -- intersect: 135803508702.83093
[2025-10-08 11:12:05] 2025-10-08 15:11:31,083 | INFO     | intersect: 135803508702.83093
[2025-10-08 11:12:05] 2025-10-08 15:11:31,083 | INFO     | chi2: 0.16292921306168165
[2025-10-08 11:12:05] 2025-10-08 15:11:31,083 | INFO     | -- intersect: 135803508702.83093
[2025-10-08 11:12:05] 2025-10-08 15:11:31,083 | INFO     | current memory leak: -77.16 B/s (using 90 data points, chi2=0.16)
[2025-10-08 11:12:05] 2025-10-08 15:11:31,084 | INFO     | could have reported an average CPU frequency of 3223 MHz (7 samples)
[2025-10-08 11:12:05] 2025-10-08 15:11:31,084 | INFO     | ..............................
[2025-10-08 11:12:05] 2025-10-08 15:11:31,084 | INFO     | . Timing measurements:
[2025-10-08 11:12:05] 2025-10-08 15:11:31,084 | INFO     | . get job = 0 s
[2025-10-08 11:12:05] 2025-10-08 15:11:31,084 | INFO     | . initial setup = 6 s
[2025-10-08 11:12:05] 2025-10-08 15:11:31,084 | INFO     | . payload setup = 16 s
[2025-10-08 11:12:05] 2025-10-08 15:11:31,084 | INFO     | . stage-in = 0 s
[2025-10-08 11:12:05] 2025-10-08 15:11:31,084 | INFO     | . payload execution = 5877 s
[2025-10-08 11:12:05] 2025-10-08 15:11:31,084 | INFO     | . stage-out = 1 s
[2025-10-08 11:12:05] 2025-10-08 15:11:31,084 | INFO     | . log creation = 0 s
[2025-10-08 11:12:05] 2025-10-08 15:11:31,084 | INFO     | ..............................
[2025-10-08 11:12:05] 2025-10-08 15:11:31,232 | INFO     | 
[2025-10-08 11:12:05] 2025-10-08 15:11:31,233 | INFO     | job summary report
[2025-10-08 11:12:05] 2025-10-08 15:11:31,233 | INFO     | --------------------------------------------------
[2025-10-08 11:12:05] 2025-10-08 15:11:31,233 | INFO     | PanDA job id: 6836115513
[2025-10-08 11:12:05] 2025-10-08 15:11:31,233 | INFO     | task id: 46376905
[2025-10-08 11:12:05] 2025-10-08 15:11:31,233 | INFO     | errors: (none)
[2025-10-08 11:12:05] 2025-10-08 15:11:31,233 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-08 11:12:05] 2025-10-08 15:11:31,233 | INFO     | pilot state: finished 
[2025-10-08 11:12:05] 2025-10-08 15:11:31,233 | INFO     | transexitcode: 0
[2025-10-08 11:12:05] 2025-10-08 15:11:31,233 | INFO     | exeerrorcode: 0
[2025-10-08 11:12:05] 2025-10-08 15:11:31,233 | INFO     | exeerrordiag: 
[2025-10-08 11:12:05] 2025-10-08 15:11:31,233 | INFO     | exitcode: 0
[2025-10-08 11:12:05] 2025-10-08 15:11:31,233 | INFO     | exitmsg: OK
[2025-10-08 11:12:05] 2025-10-08 15:11:31,233 | INFO     | cpuconsumptiontime: 28851 s
[2025-10-08 11:12:05] 2025-10-08 15:11:31,233 | INFO     | nevents: 400
[2025-10-08 11:12:05] 2025-10-08 15:11:31,234 | INFO     | neventsw: 0
[2025-10-08 11:12:05] 2025-10-08 15:11:31,234 | INFO     | pid: 915942
[2025-10-08 11:12:05] 2025-10-08 15:11:31,234 | INFO     | pgrp: 915942
[2025-10-08 11:12:05] 2025-10-08 15:11:31,234 | INFO     | corecount: 8
[2025-10-08 11:12:05] 2025-10-08 15:11:31,234 | INFO     | event service: False
[2025-10-08 11:12:05] 2025-10-08 15:11:31,234 | INFO     | sizes: {0: 2348819, 1: 2348819, 11: 2349109, 22: 2349137, 5897: 2375892, 5900: 2385074, 5910: 2385212}
[2025-10-08 11:12:05] 2025-10-08 15:11:31,234 | INFO     | --------------------------------------------------
[2025-10-08 11:12:05] 2025-10-08 15:11:31,234 | INFO     | 
[2025-10-08 11:12:05] 2025-10-08 15:11:31,234 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-10-08 11:12:05] 2025-10-08 15:11:31,352 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-08 11:12:05] 2025-10-08 15:11:31,352 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-08 11:12:05] 2025-10-08 15:11:31,352 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-08 11:12:05] 2025-10-08 15:11:31,352 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-08 11:12:05] 2025-10-08 15:11:31,352 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-08 11:12:05] 2025-10-08 15:11:31,352 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-08 11:12:05] 2025-10-08 15:11:31,352 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-08 11:12:05] 2025-10-08 15:11:31,352 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-08 11:12:05] 2025-10-08 15:11:31,353 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-08 11:12:05] 2025-10-08 15:11:31,353 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-08 11:12:05] 2025-10-08 15:11:31,353 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-08 11:12:05] 2025-10-08 15:11:31,353 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-08 11:12:05] 2025-10-08 15:11:31,353 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-08 11:12:05] 2025-10-08 15:11:31,353 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-08 11:12:05] 2025-10-08 15:11:31,353 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-08 11:12:05] 2025-10-08 15:11:31,353 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-08 11:12:05] 2025-10-08 15:11:31,353 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-08 11:12:05] 2025-10-08 15:11:31,353 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-08 11:12:05] 2025-10-08 15:11:31,353 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-08 11:12:05] 2025-10-08 15:11:31,353 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-08 11:12:05] 2025-10-08 15:11:31,353 | INFO     | job 6836115513 has completed (purged errors)
[2025-10-08 11:12:05] 2025-10-08 15:11:31,354 | INFO     | overall cleanup function is called
[2025-10-08 11:12:05] 2025-10-08 15:11:32,363 | INFO     | --- collectZombieJob: --- 10, [915942]
[2025-10-08 11:12:05] 2025-10-08 15:11:32,363 | INFO     | zombie collector waiting for pid 915942
[2025-10-08 11:12:05] 2025-10-08 15:11:32,363 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-08 11:12:05] 2025-10-08 15:11:32,363 | INFO     | collected zombie processes
[2025-10-08 11:12:05] 2025-10-08 15:11:32,363 | INFO     | will attempt to kill all subprocesses of pid=915942
[2025-10-08 11:12:05] 2025-10-08 15:11:32,703 | INFO     | process IDs to be killed: [915942] (in reverse order)
[2025-10-08 11:12:05] 2025-10-08 15:11:32,813 | WARNING  | found no corresponding commands to process id(s)
[2025-10-08 11:12:05] 2025-10-08 15:11:32,814 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-08 11:12:05] 2025-10-08 15:11:32,832 | INFO     | did not find any defunct processes belonging to 915942
[2025-10-08 11:12:05] 2025-10-08 15:11:32,845 | INFO     | did not find any defunct processes belonging to 915942
[2025-10-08 11:12:05] 2025-10-08 15:11:32,845 | INFO     | ready for new job
[2025-10-08 11:12:05] 2025-10-08 15:11:32,845 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-08 11:12:05] 2025-10-08 15:11:32,847 | INFO     | ***************************************
[2025-10-08 11:12:05] 2025-10-08 15:11:32,848 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-08 11:12:05] 2025-10-08 15:11:32,848 | INFO     | ***************************************
[2025-10-08 11:12:05] 2025-10-08 15:11:32,848 | INFO     | 
[2025-10-08 11:12:05] 2025-10-08 15:11:32,851 | INFO     | architecture information:
[2025-10-08 11:12:05] 2025-10-08 15:11:32,852 | INFO     | executing command: cat /etc/os-release
[2025-10-08 11:12:05] 2025-10-08 15:11:32,876 | INFO     | cat /etc/os-release:
[2025-10-08 11:12:05] NAME="CentOS Linux"
[2025-10-08 11:12:05] VERSION="7 (Core)"
[2025-10-08 11:12:05] ID="centos"
[2025-10-08 11:12:05] ID_LIKE="rhel fedora"
[2025-10-08 11:12:05] VERSION_ID="7"
[2025-10-08 11:12:05] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-08 11:12:05] ANSI_COLOR="0;31"
[2025-10-08 11:12:05] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-08 11:12:05] HOME_URL="https://www.centos.org/"
[2025-10-08 11:12:05] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-08 11:12:05] 
[2025-10-08 11:12:05] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-08 11:12:05] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-08 11:12:05] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-08 11:12:05] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-08 11:12:05] 
[2025-10-08 11:12:05] 2025-10-08 15:11:32,876 | INFO     | ***************************************
[2025-10-08 11:12:05] 2025-10-08 15:11:33,380 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-10-08 11:12:05] 2025-10-08 15:11:33,508 | INFO     | sufficient remaining disk space (86510665728 B)
[2025-10-08 11:12:05] 2025-10-08 15:11:33,509 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-08 11:12:05] 2025-10-08 15:11:33,509 | INFO     | current server update state: UPDATING_FINAL
[2025-10-08 11:12:05] 2025-10-08 15:11:33,509 | INFO     | update_server=False
[2025-10-08 11:12:05] 2025-10-08 15:11:33,509 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-08 11:12:05] 2025-10-08 15:11:33,510 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-08 11:12:05] 2025-10-08 15:11:33,510 | INFO     | aborting loop
[2025-10-08 11:12:05] 2025-10-08 15:11:33,870 | INFO     | all job control threads have been joined
[2025-10-08 11:12:05] 2025-10-08 15:11:33,958 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-08 11:12:05] 2025-10-08 15:11:34,104 | INFO     | all data control threads have been joined
[2025-10-08 11:12:05] 2025-10-08 15:11:34,515 | INFO     | [job] retrieve thread has finished
[2025-10-08 11:12:05] 2025-10-08 15:11:34,516 | INFO     | [job] job monitor thread has finished
[2025-10-08 11:12:05] 2025-10-08 15:11:34,863 | INFO     | [payload] failed_post thread has finished
[2025-10-08 11:12:05] 2025-10-08 15:11:34,875 | INFO     | [job] control thread has finished
[2025-10-08 11:12:05] 2025-10-08 15:11:34,887 | INFO     | all payload control threads have been joined
[2025-10-08 11:12:05] 2025-10-08 15:11:35,114 | INFO     | [data] control thread has finished
[2025-10-08 11:12:05] 2025-10-08 15:11:35,129 | INFO     | [data] copytool_in thread has finished
[2025-10-08 11:12:05] 2025-10-08 15:11:35,191 | INFO     | [payload] validate_post thread has finished
[2025-10-08 11:12:05] 2025-10-08 15:11:35,433 | INFO     | [payload] validate_pre thread has finished
[2025-10-08 11:12:05] 2025-10-08 15:11:35,488 | INFO     | [payload] execute_payloads thread has finished
[2025-10-08 11:12:05] 2025-10-08 15:11:35,631 | INFO     | [job] create_data_payload thread has finished
[2025-10-08 11:12:05] 2025-10-08 15:11:35,734 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-08 11:12:05] 2025-10-08 15:11:35,841 | INFO     | [job] validate thread has finished
[2025-10-08 11:12:05] 2025-10-08 15:11:35,893 | INFO     | [payload] control thread has finished
[2025-10-08 11:12:05] 2025-10-08 15:11:35,965 | INFO     | [data] copytool_out thread has finished
[2025-10-08 11:12:05] 2025-10-08 15:11:36,035 | INFO     | [monitor] cgroup control has ended
[2025-10-08 11:12:05] 2025-10-08 15:11:36,247 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-08 11:12:05] 2025-10-08 15:11:36,252 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-08 11:12:05] 2025-10-08 15:11:37,257 | INFO     | [job] queue monitor thread has finished
[2025-10-08 11:12:05] 2025-10-08 15:11:40,261 | INFO     | [data] queue_monitor thread has finished
[2025-10-08 11:12:05] 2025-10-08 15:11:41,690 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139748787124032)>', '<ExcThread(monitor, started 139748135909120)>']
[2025-10-08 11:12:05] 2025-10-08 15:11:46,717 | INFO     | all workflow threads have been joined
[2025-10-08 11:12:05] 2025-10-08 15:11:46,717 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-08 11:12:05] 2025-10-08 15:11:46,717 | INFO     | traces error code: 0
[2025-10-08 11:12:05] 2025-10-08 15:11:46,718 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-08 11:12:05] 2025-10-08 15:12:04,540 | INFO     | PID=908124 has CPU usage=2.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-10-08 11:12:05] 2025-10-08 15:12:04,541 | INFO     | .. there are 9 such processes running
[2025-10-08 11:12:05] 2025-10-08 15:12:04,542 | INFO     | found 0 job(s) in 20 queues
[2025-10-08 11:12:05] 2025-10-08 15:12:04,542 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-08 11:12:05] 2025-10-08 15:12:04,542 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-08 11:12:05] 2025-10-08 15:12:04,542 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-08 11:12:05] 2025-10-08 15:12:04,543 | INFO     | [monitor] control thread has ended
[2025-10-08 11:12:05] 2025-10-08 15:12:04,909 [wrapper] ==== pilot stdout END ====
[2025-10-08 11:12:05] 2025-10-08 15:12:04,924 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-08 11:12:05] 2025-10-08 15:12:04,968 [wrapper] pilotpid: 908124
[2025-10-08 11:12:05] 2025-10-08 15:12:05,007 [wrapper] Pilot exit status: 0
[2025-10-08 11:12:05] 2025-10-08 15:12:05,082 [wrapper] pandaids: 6836115513
[2025-10-08 11:12:05] 2025-10-08 15:12:05,154 [wrapper] cleanup supervisor_pilot 1058114 908125
[2025-10-08 11:12:05] 2025-10-08 15:12:05,157 [wrapper] Test setup, not cleaning
[2025-10-08 11:12:05] 2025-10-08 15:12:05,160 [wrapper] apfmon messages muted
[2025-10-08 11:12:05] 2025-10-08 15:12:05,162 [wrapper] ==== wrapper stdout END ====
[2025-10-08 11:12:05] 2025-10-08 15:12:05,164 [wrapper] ==== wrapper stderr END ====
[2025-10-08 11:12:05]  *** Error codes and diagnostics ***
[2025-10-08 11:12:05]     "exeErrorCode": 0,
[2025-10-08 11:12:05]     "exeErrorDiag": "",
[2025-10-08 11:12:05]     "pilotErrorCode": 0,
[2025-10-08 11:12:05]     "pilotErrorDiag": "",
[2025-10-08 11:12:05]  *** Listing of results directory ***
[2025-10-08 11:12:05] total 389748
[2025-10-08 11:12:05] -rw-r--r--. 1 boincer umatlas    557409 Oct  8 09:13 pilot3.tar.gz
[2025-10-08 11:12:05] -rwx------. 1 boincer umatlas     36292 Oct  8 09:25 runpilot2-wrapper.sh
[2025-10-08 11:12:05] -rw-r--r--. 1 boincer umatlas      5112 Oct  8 09:25 queuedata.json
[2025-10-08 11:12:05] -rw-r--r--. 1 boincer umatlas       100 Oct  8 09:31 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-08 11:12:05] -rwxr-xr-x. 1 boincer umatlas      7986 Oct  8 09:31 run_atlas
[2025-10-08 11:12:05] -rw-r--r--. 1 boincer umatlas       105 Oct  8 09:31 job.xml
[2025-10-08 11:12:05] -rw-r--r--. 2 boincer umatlas 214770656 Oct  8 09:31 EVNT.46376901._004803.pool.root.1
[2025-10-08 11:12:05] -rw-r--r--. 2 boincer umatlas     15120 Oct  8 09:31 start_atlas.sh
[2025-10-08 11:12:05] drwxrwx--x. 2 boincer umatlas      4096 Oct  8 09:31 shared
[2025-10-08 11:12:05] -rw-r--r--. 2 boincer umatlas    569677 Oct  8 09:31 input.tar.gz
[2025-10-08 11:12:05] -rw-r--r--. 1 boincer umatlas         0 Oct  8 09:31 boinc_lockfile
[2025-10-08 11:12:05] -rw-r--r--. 1 boincer umatlas      2520 Oct  8 09:31 pandaJob.out
[2025-10-08 11:12:05] -rw-------. 1 boincer umatlas    979369 Oct  8 09:32 agis_schedconf.cvmfs.json
[2025-10-08 11:12:05] -rw-------. 1 boincer umatlas   1560401 Oct  8 09:32 agis_ddmendpoints.agis.ALL.json
[2025-10-08 11:12:05] drwx------. 5 boincer umatlas      4096 Oct  8 09:32 pilot3
[2025-10-08 11:12:05] -rw-r--r--. 1 boincer umatlas      6899 Oct  8 11:09 init_data.xml
[2025-10-08 11:12:05] -rw-------. 1 boincer umatlas 178062942 Oct  8 11:10 HITS.46376905._135874.pool.root.1
[2025-10-08 11:12:05] -rw-r--r--. 1 boincer umatlas       529 Oct  8 11:10 boinc_task_state.xml
[2025-10-08 11:12:05] -rw-------. 1 boincer umatlas      1033 Oct  8 11:11 memory_monitor_summary.json
[2025-10-08 11:12:05] -rw-------. 1 boincer umatlas    341609 Oct  8 11:11 log.46376905._135874.job.log.tgz.1
[2025-10-08 11:12:05] -rw-------. 1 boincer umatlas      7783 Oct  8 11:11 heartbeat.json
[2025-10-08 11:12:05] -rw-r--r--. 1 boincer umatlas      8192 Oct  8 11:12 boinc_mmap_file
[2025-10-08 11:12:05] -rw-r--r--. 1 boincer umatlas        27 Oct  8 11:12 wrapper_checkpoint.txt
[2025-10-08 11:12:05] -rw-------. 1 boincer umatlas        95 Oct  8 11:12 pilot_heartbeat.json
[2025-10-08 11:12:05] -rw-------. 1 boincer umatlas       821 Oct  8 11:12 pilotlog.txt
[2025-10-08 11:12:05] -rw-------. 1 boincer umatlas    840389 Oct  8 11:12 log.46376905._135874.job.log.1
[2025-10-08 11:12:05] -rw-------. 1 boincer umatlas       357 Oct  8 11:12 output.list
[2025-10-08 11:12:05] -rw-r--r--. 1 boincer umatlas       620 Oct  8 11:12 runtime_log
[2025-10-08 11:12:05] -rw-------. 1 boincer umatlas   1198080 Oct  8 11:12 result.tar.gz
[2025-10-08 11:12:05] -rw-r--r--. 1 boincer umatlas      8703 Oct  8 11:12 runtime_log.err
[2025-10-08 11:12:05] -rw-------. 1 boincer umatlas       652 Oct  8 11:12 OIgKDm8LjQ8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmq5XNDm04V0Om.diag
[2025-10-08 11:12:05] -rw-r--r--. 1 boincer umatlas     22127 Oct  8 11:12 stderr.txt
[2025-10-08 11:12:05] HITS file was successfully produced:
[2025-10-08 11:12:05] -rw-------. 1 boincer umatlas 178062942 Oct  8 11:10 shared/HITS.pool.root.1
[2025-10-08 11:12:05]  *** Contents of shared directory: ***
[2025-10-08 11:12:05] total 385388
[2025-10-08 11:12:05] -rw-r--r--. 2 boincer umatlas 214770656 Oct  8 09:31 ATLAS.root_0
[2025-10-08 11:12:05] -rw-r--r--. 2 boincer umatlas     15120 Oct  8 09:31 start_atlas.sh
[2025-10-08 11:12:05] -rw-r--r--. 2 boincer umatlas    569677 Oct  8 09:31 input.tar.gz
[2025-10-08 11:12:05] -rw-------. 1 boincer umatlas 178062942 Oct  8 11:10 HITS.pool.root.1
[2025-10-08 11:12:05] -rw-------. 1 boincer umatlas   1198080 Oct  8 11:12 result.tar.gz
11:12:07 (902990): run_atlas exited; CPU time 28868.887036
11:12:07 (902990): called boinc_finish(0)

</stderr_txt>
]]>

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