Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
09:12:18 (16806): wrapper (7.7.26015): starting
09:12:18 (16806): wrapper: running run_atlas (--nthreads 12)
[2025-10-08 09:12:18] Arguments: --nthreads 12
[2025-10-08 09:12:18] Threads: 12
[2025-10-08 09:12:18] Checking for CVMFS
[2025-10-08 09:12:18] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-08 09:12:18] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-08 09:12:18] Running cvmfs_config stat atlas.cern.ch
[2025-10-08 09:12:18] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-08 09:12:18] 2.11.2.0 2914 217166 98320 151472 0 57 20155281 20275200 1 130560 1 103450468 99.983 13062534 12216 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-08 09:12:18] CVMFS is ok
[2025-10-08 09:12:18] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-08 09:12:18] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-08 09:12:18] Further information can be found at the LHC@home message board.
[2025-10-08 09:12:18] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-08 09:12:18] Checking for apptainer binary...
[2025-10-08 09:12:18] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-08 09:12:18] Running /usr/bin/apptainer --version
[2025-10-08 09:12:18] apptainer version 1.3.2-1.el7
[2025-10-08 09:12:18] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-08 09:12:20] c-205-5.aglt2.org
[2025-10-08 09:12:20] apptainer works
[2025-10-08 09:12:20] Set ATHENA_PROC_NUMBER=12
[2025-10-08 09:12:20] Set ATHENA_CORE_NUMBER=12
[2025-10-08 09:12:20] Starting ATLAS job with PandaID=6835983585
[2025-10-08 09:12:20] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-08 10:27:57]  *** The last 200 lines of the pilot log: ***
[2025-10-08 10:27:57]  status=None
[2025-10-08 10:27:57]  status_code=0
[2025-10-08 10:27:57]  storage_token=
[2025-10-08 10:27:57]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6835983585/log.46676269._005025.job.log.tgz.1
[2025-10-08 10:27:57]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/27/67/log.46676269._005025.job.log.tgz.1
[2025-10-08 10:27:57]  workdir=None
[2025-10-08 10:27:57] ]
[2025-10-08 10:27:57] 2025-10-08 14:27:16,070 | INFO     | transferring file log.46676269._005025.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6835983585/log.46676269._005025.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-10-08 10:27:57] 2025-10-08 14:27:16,071 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6835983585/log.46676269._005025.job.log.tgz.1 /tmp/boinchome/slots/0/log.46676269._005025.job
[2025-10-08 10:27:57] 2025-10-08 14:27:16,093 | INFO     | adding to output.list: log.46676269._005025.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/27/67/log.46676269._005025.job.log.tg
[2025-10-08 10:27:57] 2025-10-08 14:27:16,094 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-08 10:27:57] 2025-10-08 14:27:16,094 | INFO     | summary of transferred files:
[2025-10-08 10:27:57] 2025-10-08 14:27:16,094 | INFO     |  -- lfn=log.46676269._005025.job.log.tgz.1, status_code=0, status=transferred
[2025-10-08 10:27:57] 2025-10-08 14:27:16,095 | INFO     | stage-out finished correctly
[2025-10-08 10:27:57] 2025-10-08 14:27:17,727 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-08 10:27:57] 2025-10-08 14:27:17,984 | INFO     | time since job start (4480s) is within the limit (172800.0s)
[2025-10-08 10:27:57] 2025-10-08 14:27:19,664 | WARNING  | process 27211 can no longer be monitored (due to stat problems) - aborting
[2025-10-08 10:27:57] 2025-10-08 14:27:19,665 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6835983585/memory_monitor_summary.json (trf name=prmon)
[2025-10-08 10:27:57] 2025-10-08 14:27:19,755 | INFO     | number of running child processes to parent process 27211: 1
[2025-10-08 10:27:57] 2025-10-08 14:27:19,755 | INFO     | maximum number of monitored processes: 6
[2025-10-08 10:27:57] 2025-10-08 14:27:19,805 | INFO     | job 6835983585 has state=finished
[2025-10-08 10:27:57] 2025-10-08 14:27:19,806 | INFO     | preparing for final server update for job 6835983585 in state='finished'
[2025-10-08 10:27:57] 2025-10-08 14:27:19,806 | INFO     | this job has now completed (state=finished)
[2025-10-08 10:27:57] 2025-10-08 14:27:19,806 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-08 10:27:57] 2025-10-08 14:27:19,807 | INFO     | log transfer has been attempted: DONE
[2025-10-08 10:27:57] 2025-10-08 14:27:19,807 | INFO     | job 6835983585 has finished - writing final server update
[2025-10-08 10:27:57] 2025-10-08 14:27:19,807 | INFO     | total number of processed events: 400 (read)
[2025-10-08 10:27:57] 2025-10-08 14:27:19,808 | INFO     | executing command: lscpu
[2025-10-08 10:27:57] 2025-10-08 14:27:19,837 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-08 10:27:57] 2025-10-08 14:27:19,989 | INFO     | time since job start (4482s) is within the limit (172800.0s)
[2025-10-08 10:27:57] 2025-10-08 14:27:21,113 | INFO     | PID=20843 has CPU usage=6.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-08 10:27:57] 2025-10-08 14:27:22,113 | INFO     | time since job start (4485s) is within the limit (172800.0s)
[2025-10-08 10:27:57] 2025-10-08 14:27:22,258 | INFO     | monitor loop #334: job 0:6835983585 is in state 'finished'
[2025-10-08 10:27:57] 2025-10-08 14:27:22,258 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-08 10:27:57] 2025-10-08 14:27:24,118 | INFO     | time since job start (4487s) is within the limit (172800.0s)
[2025-10-08 10:27:57] 2025-10-08 14:27:24,669 | INFO     | CPU arch script returned: x86-64-v2
[2025-10-08 10:27:57] 2025-10-08 14:27:24,682 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1795.5833333333333
[2025-10-08 10:27:57] 2025-10-08 14:27:24,683 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6835983585/memory_monitor_summary.json (trf name=prmon)
[2025-10-08 10:27:57] 2025-10-08 14:27:24,684 | INFO     | extracted standard info from prmon json
[2025-10-08 10:27:57] 2025-10-08 14:27:24,684 | INFO     | extracted standard memory fields from prmon json
[2025-10-08 10:27:57] 2025-10-08 14:27:24,684 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-08 10:27:57] 2025-10-08 14:27:24,685 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-08 10:27:57] 2025-10-08 14:27:24,685 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-08 10:27:57] 2025-10-08 14:27:24,687 | INFO     | fitting pss+swap vs Time
[2025-10-08 10:27:57] 2025-10-08 14:27:24,687 | INFO     | sum of square deviations: 89127252.5
[2025-10-08 10:27:57] 2025-10-08 14:27:24,687 | INFO     | sum of deviations: -9335927.99999994
[2025-10-08 10:27:57] 2025-10-08 14:27:24,687 | INFO     | mean x: 1759931473.5
[2025-10-08 10:27:57] 2025-10-08 14:27:24,687 | INFO     | mean y: 2700015.1818181816
[2025-10-08 10:27:57] 2025-10-08 14:27:24,688 | INFO     | -- intersect: 187049841.53296486
[2025-10-08 10:27:57] 2025-10-08 14:27:24,688 | INFO     | intersect: 187049841.53296486
[2025-10-08 10:27:57] 2025-10-08 14:27:24,688 | INFO     | chi2: 0.0035239284704302086
[2025-10-08 10:27:57] 2025-10-08 14:27:24,688 | INFO     | -- intersect: 187049841.53296486
[2025-10-08 10:27:57] 2025-10-08 14:27:24,688 | INFO     | current memory leak: -0.10 B/s (using 66 data points, chi2=0.00)
[2025-10-08 10:27:57] 2025-10-08 14:27:24,688 | INFO     | could have reported an average CPU frequency of 2078 MHz (6 samples)
[2025-10-08 10:27:57] 2025-10-08 14:27:24,689 | INFO     | ..............................
[2025-10-08 10:27:57] 2025-10-08 14:27:24,689 | INFO     | . Timing measurements:
[2025-10-08 10:27:57] 2025-10-08 14:27:24,689 | INFO     | . get job = 0 s
[2025-10-08 10:27:57] 2025-10-08 14:27:24,689 | INFO     | . initial setup = 2 s
[2025-10-08 10:27:57] 2025-10-08 14:27:24,689 | INFO     | . payload setup = 7 s
[2025-10-08 10:27:57] 2025-10-08 14:27:24,689 | INFO     | . stage-in = 0 s
[2025-10-08 10:27:57] 2025-10-08 14:27:24,689 | INFO     | . payload execution = 4450 s
[2025-10-08 10:27:57] 2025-10-08 14:27:24,689 | INFO     | . stage-out = 0 s
[2025-10-08 10:27:57] 2025-10-08 14:27:24,689 | INFO     | . log creation = 0 s
[2025-10-08 10:27:57] 2025-10-08 14:27:24,689 | INFO     | ..............................
[2025-10-08 10:27:57] 2025-10-08 14:27:24,776 | INFO     | 
[2025-10-08 10:27:57] 2025-10-08 14:27:24,776 | INFO     | job summary report
[2025-10-08 10:27:57] 2025-10-08 14:27:24,776 | INFO     | --------------------------------------------------
[2025-10-08 10:27:57] 2025-10-08 14:27:24,777 | INFO     | PanDA job id: 6835983585
[2025-10-08 10:27:57] 2025-10-08 14:27:24,777 | INFO     | task id: 46676269
[2025-10-08 10:27:57] 2025-10-08 14:27:24,777 | INFO     | errors: (none)
[2025-10-08 10:27:57] 2025-10-08 14:27:24,777 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-08 10:27:57] 2025-10-08 14:27:24,777 | INFO     | pilot state: finished 
[2025-10-08 10:27:57] 2025-10-08 14:27:24,777 | INFO     | transexitcode: 0
[2025-10-08 10:27:57] 2025-10-08 14:27:24,777 | INFO     | exeerrorcode: 0
[2025-10-08 10:27:57] 2025-10-08 14:27:24,778 | INFO     | exeerrordiag: 
[2025-10-08 10:27:57] 2025-10-08 14:27:24,778 | INFO     | exitcode: 0
[2025-10-08 10:27:57] 2025-10-08 14:27:24,778 | INFO     | exitmsg: OK
[2025-10-08 10:27:57] 2025-10-08 14:27:24,778 | INFO     | cpuconsumptiontime: 47450 s
[2025-10-08 10:27:57] 2025-10-08 14:27:24,778 | INFO     | nevents: 400
[2025-10-08 10:27:57] 2025-10-08 14:27:24,778 | INFO     | neventsw: 0
[2025-10-08 10:27:57] 2025-10-08 14:27:24,778 | INFO     | pid: 27211
[2025-10-08 10:27:57] 2025-10-08 14:27:24,778 | INFO     | pgrp: 27211
[2025-10-08 10:27:57] 2025-10-08 14:27:24,778 | INFO     | corecount: 12
[2025-10-08 10:27:57] 2025-10-08 14:27:24,778 | INFO     | event service: False
[2025-10-08 10:27:57] 2025-10-08 14:27:24,779 | INFO     | sizes: {0: 2348852, 5: 2349114, 11: 2349170, 4461: 2375243, 4462: 2384241, 4464: 2384297, 4471: 2384619}
[2025-10-08 10:27:57] 2025-10-08 14:27:24,779 | INFO     | --------------------------------------------------
[2025-10-08 10:27:57] 2025-10-08 14:27:24,779 | INFO     | 
[2025-10-08 10:27:57] 2025-10-08 14:27:24,779 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-10-08 10:27:57] 2025-10-08 14:27:24,803 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-08 10:27:57] 2025-10-08 14:27:24,803 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-08 10:27:57] 2025-10-08 14:27:24,803 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-08 10:27:57] 2025-10-08 14:27:24,803 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-08 10:27:57] 2025-10-08 14:27:24,803 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-08 10:27:57] 2025-10-08 14:27:24,804 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-08 10:27:57] 2025-10-08 14:27:24,804 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-08 10:27:57] 2025-10-08 14:27:24,804 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-08 10:27:57] 2025-10-08 14:27:24,804 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-08 10:27:57] 2025-10-08 14:27:24,804 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-08 10:27:57] 2025-10-08 14:27:24,805 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-08 10:27:57] 2025-10-08 14:27:24,805 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-08 10:27:57] 2025-10-08 14:27:24,805 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-08 10:27:57] 2025-10-08 14:27:24,805 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-08 10:27:57] 2025-10-08 14:27:24,805 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-08 10:27:57] 2025-10-08 14:27:24,805 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-08 10:27:57] 2025-10-08 14:27:24,806 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-08 10:27:57] 2025-10-08 14:27:24,806 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-08 10:27:57] 2025-10-08 14:27:24,806 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-08 10:27:57] 2025-10-08 14:27:24,806 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-08 10:27:57] 2025-10-08 14:27:24,806 | INFO     | job 6835983585 has completed (purged errors)
[2025-10-08 10:27:57] 2025-10-08 14:27:24,807 | INFO     | overall cleanup function is called
[2025-10-08 10:27:57] 2025-10-08 14:27:25,814 | INFO     | --- collectZombieJob: --- 10, [27211]
[2025-10-08 10:27:57] 2025-10-08 14:27:25,815 | INFO     | zombie collector waiting for pid 27211
[2025-10-08 10:27:57] 2025-10-08 14:27:25,815 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-08 10:27:57] 2025-10-08 14:27:25,815 | INFO     | collected zombie processes
[2025-10-08 10:27:57] 2025-10-08 14:27:25,815 | INFO     | will attempt to kill all subprocesses of pid=27211
[2025-10-08 10:27:57] 2025-10-08 14:27:25,905 | INFO     | process IDs to be killed: [27211] (in reverse order)
[2025-10-08 10:27:57] 2025-10-08 14:27:25,957 | WARNING  | found no corresponding commands to process id(s)
[2025-10-08 10:27:57] 2025-10-08 14:27:25,957 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-08 10:27:57] 2025-10-08 14:27:25,961 | INFO     | did not find any defunct processes belonging to 27211
[2025-10-08 10:27:57] 2025-10-08 14:27:25,964 | INFO     | did not find any defunct processes belonging to 27211
[2025-10-08 10:27:57] 2025-10-08 14:27:25,965 | INFO     | ready for new job
[2025-10-08 10:27:57] 2025-10-08 14:27:25,965 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-08 10:27:57] 2025-10-08 14:27:25,966 | INFO     | ***************************************
[2025-10-08 10:27:57] 2025-10-08 14:27:25,967 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-08 10:27:57] 2025-10-08 14:27:25,967 | INFO     | ***************************************
[2025-10-08 10:27:57] 2025-10-08 14:27:25,967 | INFO     | 
[2025-10-08 10:27:57] 2025-10-08 14:27:25,968 | INFO     | architecture information:
[2025-10-08 10:27:57] 2025-10-08 14:27:25,968 | INFO     | executing command: cat /etc/os-release
[2025-10-08 10:27:57] 2025-10-08 14:27:25,983 | INFO     | cat /etc/os-release:
[2025-10-08 10:27:57] NAME="CentOS Linux"
[2025-10-08 10:27:57] VERSION="7 (Core)"
[2025-10-08 10:27:57] ID="centos"
[2025-10-08 10:27:57] ID_LIKE="rhel fedora"
[2025-10-08 10:27:57] VERSION_ID="7"
[2025-10-08 10:27:57] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-08 10:27:57] ANSI_COLOR="0;31"
[2025-10-08 10:27:57] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-08 10:27:57] HOME_URL="https://www.centos.org/"
[2025-10-08 10:27:57] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-08 10:27:57] 
[2025-10-08 10:27:57] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-08 10:27:57] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-08 10:27:57] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-08 10:27:57] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-08 10:27:57] 
[2025-10-08 10:27:57] 2025-10-08 14:27:25,983 | INFO     | ***************************************
[2025-10-08 10:27:57] 2025-10-08 14:27:26,486 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-10-08 10:27:57] 2025-10-08 14:27:26,502 | INFO     | sufficient remaining disk space (29363273728 B)
[2025-10-08 10:27:57] 2025-10-08 14:27:26,503 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-08 10:27:57] 2025-10-08 14:27:26,503 | INFO     | current server update state: UPDATING_FINAL
[2025-10-08 10:27:57] 2025-10-08 14:27:26,503 | INFO     | update_server=False
[2025-10-08 10:27:57] 2025-10-08 14:27:26,503 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-08 10:27:57] 2025-10-08 14:27:26,504 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-08 10:27:57] 2025-10-08 14:27:26,504 | INFO     | aborting loop
[2025-10-08 10:27:57] 2025-10-08 14:27:26,504 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-08 10:27:57] 2025-10-08 14:27:26,691 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-08 10:27:57] 2025-10-08 14:27:26,906 | INFO     | all job control threads have been joined
[2025-10-08 10:27:57] 2025-10-08 14:27:27,013 | INFO     | all data control threads have been joined
[2025-10-08 10:27:57] 2025-10-08 14:27:27,507 | INFO     | [job] queue monitor thread has finished
[2025-10-08 10:27:57] 2025-10-08 14:27:27,509 | INFO     | [job] retrieve thread has finished
[2025-10-08 10:27:57] 2025-10-08 14:27:27,510 | INFO     | [job] job monitor thread has finished
[2025-10-08 10:27:57] 2025-10-08 14:27:27,548 | INFO     | [payload] validate_post thread has finished
[2025-10-08 10:27:57] 2025-10-08 14:27:27,613 | INFO     | all payload control threads have been joined
[2025-10-08 10:27:57] 2025-10-08 14:27:27,841 | INFO     | [payload] execute_payloads thread has finished
[2025-10-08 10:27:57] 2025-10-08 14:27:27,907 | INFO     | [job] control thread has finished
[2025-10-08 10:27:57] 2025-10-08 14:27:27,956 | INFO     | [data] copytool_in thread has finished
[2025-10-08 10:27:57] 2025-10-08 14:27:28,018 | INFO     | [data] control thread has finished
[2025-10-08 10:27:57] 2025-10-08 14:27:28,317 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-08 10:27:57] 2025-10-08 14:27:28,345 | INFO     | [job] validate thread has finished
[2025-10-08 10:27:57] 2025-10-08 14:27:28,392 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-08 10:27:57] 2025-10-08 14:27:28,535 | INFO     | [job] create_data_payload thread has finished
[2025-10-08 10:27:57] 2025-10-08 14:27:28,616 | INFO     | [payload] control thread has finished
[2025-10-08 10:27:57] 2025-10-08 14:27:28,673 | INFO     | [payload] validate_pre thread has finished
[2025-10-08 10:27:57] 2025-10-08 14:27:28,697 | INFO     | [data] copytool_out thread has finished
[2025-10-08 10:27:57] 2025-10-08 14:27:28,734 | INFO     | [payload] failed_post thread has finished
[2025-10-08 10:27:57] 2025-10-08 14:27:32,323 | INFO     | [data] queue_monitor thread has finished
[2025-10-08 10:27:57] 2025-10-08 14:27:34,190 [wrapper] supervise_pilot (15 min periods counter: 6)
[2025-10-08 10:27:57] 2025-10-08 14:27:44,001 | INFO     | [monitor] cgroup control has ended
[2025-10-08 10:27:57] 2025-10-08 14:27:44,264 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140459803494208)>', '<ExcThread(monitor, started 140458751670016)>']
[2025-10-08 10:27:57] 2025-10-08 14:27:49,290 | INFO     | all workflow threads have been joined
[2025-10-08 10:27:57] 2025-10-08 14:27:49,290 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-08 10:27:57] 2025-10-08 14:27:49,370 | INFO     | traces error code: 0
[2025-10-08 10:27:57] 2025-10-08 14:27:49,370 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-08 10:27:57] 2025-10-08 14:27:57,327 | INFO     | PID=20843 has CPU usage=1.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-08 10:27:57] 2025-10-08 14:27:57,327 | INFO     | found 0 job(s) in 20 queues
[2025-10-08 10:27:57] 2025-10-08 14:27:57,327 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-08 10:27:57] 2025-10-08 14:27:57,327 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-08 10:27:57] 2025-10-08 14:27:57,328 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-08 10:27:57] 2025-10-08 14:27:57,328 | CRITICAL | thread 'MainThread' is not alive
[2025-10-08 10:27:57] 2025-10-08 14:27:57,328 | INFO     | [monitor] control thread has ended
[2025-10-08 10:27:57] 2025-10-08 14:27:57,429 [wrapper] ==== pilot stdout END ====
[2025-10-08 10:27:57] 2025-10-08 14:27:57,433 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-08 10:27:57] 2025-10-08 14:27:57,436 [wrapper] pilotpid: 20843
[2025-10-08 10:27:57] 2025-10-08 14:27:57,440 [wrapper] Pilot exit status: 0
[2025-10-08 10:27:57] 2025-10-08 14:27:57,456 [wrapper] pandaids: 6835983585
[2025-10-08 10:27:57] 2025-10-08 14:27:57,496 [wrapper] cleanup supervisor_pilot 15079 20844
[2025-10-08 10:27:57] 2025-10-08 14:27:57,500 [wrapper] Test setup, not cleaning
[2025-10-08 10:27:57] 2025-10-08 14:27:57,504 [wrapper] apfmon messages muted
[2025-10-08 10:27:57] 2025-10-08 14:27:57,507 [wrapper] ==== wrapper stdout END ====
[2025-10-08 10:27:57] 2025-10-08 14:27:57,511 [wrapper] ==== wrapper stderr END ====
[2025-10-08 10:27:57]  *** Error codes and diagnostics ***
[2025-10-08 10:27:57]     "exeErrorCode": 0,
[2025-10-08 10:27:57]     "exeErrorDiag": "",
[2025-10-08 10:27:57]     "pilotErrorCode": 0,
[2025-10-08 10:27:57]     "pilotErrorDiag": "",
[2025-10-08 10:27:57]  *** Listing of results directory ***
[2025-10-08 10:27:57] total 413276
[2025-10-08 10:27:57] -rw-r--r-- 1 boincer umatlas    557409 Oct  8 06:04 pilot3.tar.gz
[2025-10-08 10:27:57] -rwx------ 1 boincer umatlas     36292 Oct  8 06:07 runpilot2-wrapper.sh
[2025-10-08 10:27:57] -rw-r--r-- 1 boincer umatlas      5112 Oct  8 06:07 queuedata.json
[2025-10-08 10:27:57] -rw-r--r-- 1 boincer umatlas       100 Oct  8 09:12 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-08 10:27:57] -rwxr-xr-x 1 boincer umatlas      7986 Oct  8 09:12 run_atlas
[2025-10-08 10:27:57] -rw-r--r-- 1 boincer umatlas       105 Oct  8 09:12 job.xml
[2025-10-08 10:27:57] -rw-r--r-- 2 boincer umatlas 219954586 Oct  8 09:12 EVNT.46676267._000198.pool.root.1
[2025-10-08 10:27:57] drwxrwx--x 2 boincer umatlas      4096 Oct  8 09:12 shared
[2025-10-08 10:27:57] -rw-r--r-- 2 boincer umatlas    569680 Oct  8 09:12 input.tar.gz
[2025-10-08 10:27:57] -rw-r--r-- 2 boincer umatlas     15120 Oct  8 09:12 start_atlas.sh
[2025-10-08 10:27:57] -rw-r--r-- 1 boincer umatlas         0 Oct  8 09:12 boinc_lockfile
[2025-10-08 10:27:57] -rw-r--r-- 1 boincer umatlas      2548 Oct  8 09:12 pandaJob.out
[2025-10-08 10:27:57] -rw------- 1 boincer umatlas    979337 Oct  8 09:12 agis_schedconf.cvmfs.json
[2025-10-08 10:27:57] -rw------- 1 boincer umatlas   1560401 Oct  8 09:12 agis_ddmendpoints.agis.ALL.json
[2025-10-08 10:27:57] drwx------ 5 boincer umatlas      4096 Oct  8 09:12 pilot3
[2025-10-08 10:27:57] -rw-r--r-- 1 boincer umatlas      5952 Oct  8 10:20 init_data.xml
[2025-10-08 10:27:57] -rw------- 1 boincer umatlas 197258076 Oct  8 10:26 HITS.46676269._005025.pool.root.1
[2025-10-08 10:27:57] -rw-r--r-- 1 boincer umatlas       529 Oct  8 10:27 boinc_task_state.xml
[2025-10-08 10:27:57] -rw------- 1 boincer umatlas      1046 Oct  8 10:27 memory_monitor_summary.json
[2025-10-08 10:27:57] -rw------- 1 boincer umatlas    392024 Oct  8 10:27 log.46676269._005025.job.log.tgz.1
[2025-10-08 10:27:57] -rw------- 1 boincer umatlas      7844 Oct  8 10:27 heartbeat.json
[2025-10-08 10:27:57] -rw-r--r-- 1 boincer umatlas        27 Oct  8 10:27 wrapper_checkpoint.txt
[2025-10-08 10:27:57] -rw-r--r-- 1 boincer umatlas      8192 Oct  8 10:27 boinc_mmap_file
[2025-10-08 10:27:57] -rw------- 1 boincer umatlas        95 Oct  8 10:27 pilot_heartbeat.json
[2025-10-08 10:27:57] -rw------- 1 boincer umatlas       815 Oct  8 10:27 pilotlog.txt
[2025-10-08 10:27:57] -rw------- 1 boincer umatlas    650033 Oct  8 10:27 log.46676269._005025.job.log.1
[2025-10-08 10:27:57] -rw------- 1 boincer umatlas       357 Oct  8 10:27 output.list
[2025-10-08 10:27:57] -rw-r--r-- 1 boincer umatlas       620 Oct  8 10:27 runtime_log
[2025-10-08 10:27:57] -rw------- 1 boincer umatlas   1064960 Oct  8 10:27 result.tar.gz
[2025-10-08 10:27:57] -rw-r--r-- 1 boincer umatlas      8700 Oct  8 10:27 runtime_log.err
[2025-10-08 10:27:57] -rw------- 1 boincer umatlas       658 Oct  8 10:27 4MUMDmtFgQ8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmwxXNDmcJ98An.diag
[2025-10-08 10:27:57] -rw-r--r-- 1 boincer umatlas     22065 Oct  8 10:27 stderr.txt
[2025-10-08 10:27:57] HITS file was successfully produced:
[2025-10-08 10:27:57] -rw------- 1 boincer umatlas 197258076 Oct  8 10:26 shared/HITS.pool.root.1
[2025-10-08 10:27:57]  *** Contents of shared directory: ***
[2025-10-08 10:27:57] total 409056
[2025-10-08 10:27:57] -rw-r--r-- 2 boincer umatlas 219954586 Oct  8 09:12 ATLAS.root_0
[2025-10-08 10:27:57] -rw-r--r-- 2 boincer umatlas    569680 Oct  8 09:12 input.tar.gz
[2025-10-08 10:27:57] -rw-r--r-- 2 boincer umatlas     15120 Oct  8 09:12 start_atlas.sh
[2025-10-08 10:27:57] -rw------- 1 boincer umatlas 197258076 Oct  8 10:26 HITS.pool.root.1
[2025-10-08 10:27:57] -rw------- 1 boincer umatlas   1064960 Oct  8 10:27 result.tar.gz
10:27:58 (16806): run_atlas exited; CPU time 47424.501222
10:27:58 (16806): called boinc_finish(0)

</stderr_txt>
]]>

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