Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
08:57:16 (29983): wrapper (7.7.26015): starting
08:57:16 (29983): wrapper: running run_atlas (--nthreads 12)
[2025-10-08 08:57:16] Arguments: --nthreads 12
[2025-10-08 08:57:16] Threads: 12
[2025-10-08 08:57:16] Checking for CVMFS
[2025-10-08 08:57:16] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-08 08:57:17] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-08 08:57:17] Running cvmfs_config stat atlas.cern.ch
[2025-10-08 08:57:17] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-08 08:57:17] 2.11.2.0 25590 117832 92108 151472 2 59 19435304 20275200 1 130560 2 72597224 99.991 3761221 21450 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-08 08:57:17] CVMFS is ok
[2025-10-08 08:57:17] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-08 08:57:17] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-08 08:57:17] Further information can be found at the LHC@home message board.
[2025-10-08 08:57:17] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-08 08:57:17] Checking for apptainer binary...
[2025-10-08 08:57:17] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-08 08:57:17] Running /usr/bin/apptainer --version
[2025-10-08 08:57:17] apptainer version 1.3.2-1.el7
[2025-10-08 08:57:17] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-08 08:57:18] c-205-24.aglt2.org
[2025-10-08 08:57:18] apptainer works
[2025-10-08 08:57:18] Set ATHENA_PROC_NUMBER=12
[2025-10-08 08:57:18] Set ATHENA_CORE_NUMBER=12
[2025-10-08 08:57:18] Starting ATLAS job with PandaID=6831978316
[2025-10-08 08:57:18] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-08 10:02:48]  *** The last 200 lines of the pilot log: ***
[2025-10-08 10:02:48]  status_code=0
[2025-10-08 10:02:48]  storage_token=
[2025-10-08 10:02:48]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6831978316/log.46376905._096917.job.log.tgz.1
[2025-10-08 10:02:48]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/ab/86/log.46376905._096917.job.log.tgz.1
[2025-10-08 10:02:48]  workdir=None
[2025-10-08 10:02:48] ]
[2025-10-08 10:02:48] 2025-10-08 14:01:47,464 | INFO     | transferring file log.46376905._096917.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6831978316/log.46376905._096917.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-10-08 10:02:48] 2025-10-08 14:01:47,465 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6831978316/log.46376905._096917.job.log.tgz.1 /tmp/boinchome/slots/0/log.46376905._096917.job
[2025-10-08 10:02:48] 2025-10-08 14:01:47,485 | INFO     | adding to output.list: log.46376905._096917.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/ab/86/log.46376905._096917.job.log.tg
[2025-10-08 10:02:48] 2025-10-08 14:01:47,486 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-08 10:02:48] 2025-10-08 14:01:47,486 | INFO     | summary of transferred files:
[2025-10-08 10:02:48] 2025-10-08 14:01:47,486 | INFO     |  -- lfn=log.46376905._096917.job.log.tgz.1, status_code=0, status=transferred
[2025-10-08 10:02:48] 2025-10-08 14:01:47,487 | INFO     | stage-out finished correctly
[2025-10-08 10:02:48] 2025-10-08 14:01:47,800 | INFO     | time since job start (3852s) is within the limit (172800.0s)
[2025-10-08 10:02:48] 2025-10-08 14:01:48,167 | WARNING  | process 8207 can no longer be monitored (due to stat problems) - aborting
[2025-10-08 10:02:48] 2025-10-08 14:01:48,167 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6831978316/memory_monitor_summary.json (trf name=prmon)
[2025-10-08 10:02:48] 2025-10-08 14:01:48,256 | INFO     | number of running child processes to parent process 8207: 1
[2025-10-08 10:02:48] 2025-10-08 14:01:48,256 | INFO     | maximum number of monitored processes: 6
[2025-10-08 10:02:48] 2025-10-08 14:01:48,934 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-08 10:02:48] 2025-10-08 14:01:49,017 | INFO     | job 6831978316 has state=finished
[2025-10-08 10:02:48] 2025-10-08 14:01:49,018 | INFO     | preparing for final server update for job 6831978316 in state='finished'
[2025-10-08 10:02:48] 2025-10-08 14:01:49,018 | INFO     | this job has now completed (state=finished)
[2025-10-08 10:02:48] 2025-10-08 14:01:49,018 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-08 10:02:48] 2025-10-08 14:01:49,019 | INFO     | log transfer has been attempted: DONE
[2025-10-08 10:02:48] 2025-10-08 14:01:49,019 | INFO     | job 6831978316 has finished - writing final server update
[2025-10-08 10:02:48] 2025-10-08 14:01:49,019 | INFO     | total number of processed events: 400 (read)
[2025-10-08 10:02:48] 2025-10-08 14:01:49,020 | INFO     | executing command: lscpu
[2025-10-08 10:02:48] 2025-10-08 14:01:49,046 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-08 10:02:48] 2025-10-08 14:01:49,806 | INFO     | time since job start (3854s) is within the limit (172800.0s)
[2025-10-08 10:02:48] 2025-10-08 14:01:50,759 | INFO     | monitor loop #288: job 0:6831978316 is in state 'finished'
[2025-10-08 10:02:48] 2025-10-08 14:01:50,760 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-08 10:02:48] 2025-10-08 14:01:51,811 | INFO     | time since job start (3856s) is within the limit (172800.0s)
[2025-10-08 10:02:48] 2025-10-08 14:01:52,937 | INFO     | PID=1610 has CPU usage=6.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-10-08 10:02:48] 2025-10-08 14:01:53,263 | INFO     | monitor loop #289: job 0:6831978316 is in state 'finished'
[2025-10-08 10:02:48] 2025-10-08 14:01:53,263 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-08 10:02:48] 2025-10-08 14:01:53,731 | INFO     | CPU arch script returned: x86-64-v2
[2025-10-08 10:02:48] 2025-10-08 14:01:53,735 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1684.75
[2025-10-08 10:02:48] 2025-10-08 14:01:53,738 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6831978316/memory_monitor_summary.json (trf name=prmon)
[2025-10-08 10:02:48] 2025-10-08 14:01:53,739 | INFO     | extracted standard info from prmon json
[2025-10-08 10:02:48] 2025-10-08 14:01:53,739 | INFO     | extracted standard memory fields from prmon json
[2025-10-08 10:02:48] 2025-10-08 14:01:53,739 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-08 10:02:48] 2025-10-08 14:01:53,740 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-08 10:02:48] 2025-10-08 14:01:53,740 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-08 10:02:48] 2025-10-08 14:01:53,741 | INFO     | fitting pss+swap vs Time
[2025-10-08 10:02:48] 2025-10-08 14:01:53,741 | INFO     | sum of square deviations: 54438230.0
[2025-10-08 10:02:48] 2025-10-08 14:01:53,742 | INFO     | sum of deviations: -3364656544.0
[2025-10-08 10:02:48] 2025-10-08 14:01:53,742 | INFO     | mean x: 1759930266.5
[2025-10-08 10:02:48] 2025-10-08 14:01:53,742 | INFO     | mean y: 2711560.8571428573
[2025-10-08 10:02:48] 2025-10-08 14:01:53,742 | INFO     | -- intersect: 108778490791.05786
[2025-10-08 10:02:48] 2025-10-08 14:01:53,742 | INFO     | intersect: 108778490791.05786
[2025-10-08 10:02:48] 2025-10-08 14:01:53,742 | INFO     | chi2: 0.06999680708260328
[2025-10-08 10:02:48] 2025-10-08 14:01:53,742 | INFO     | -- intersect: 108778490791.05786
[2025-10-08 10:02:48] 2025-10-08 14:01:53,743 | INFO     | current memory leak: -61.81 B/s (using 56 data points, chi2=0.07)
[2025-10-08 10:02:48] 2025-10-08 14:01:53,743 | INFO     | could have reported an average CPU frequency of 2041 MHz (6 samples)
[2025-10-08 10:02:48] 2025-10-08 14:01:53,743 | INFO     | ..............................
[2025-10-08 10:02:48] 2025-10-08 14:01:53,743 | INFO     | . Timing measurements:
[2025-10-08 10:02:48] 2025-10-08 14:01:53,743 | INFO     | . get job = 0 s
[2025-10-08 10:02:48] 2025-10-08 14:01:53,743 | INFO     | . initial setup = 2 s
[2025-10-08 10:02:48] 2025-10-08 14:01:53,743 | INFO     | . payload setup = 7 s
[2025-10-08 10:02:48] 2025-10-08 14:01:53,744 | INFO     | . stage-in = 0 s
[2025-10-08 10:02:48] 2025-10-08 14:01:53,744 | INFO     | . payload execution = 3824 s
[2025-10-08 10:02:48] 2025-10-08 14:01:53,744 | INFO     | . stage-out = 0 s
[2025-10-08 10:02:48] 2025-10-08 14:01:53,744 | INFO     | . log creation = 0 s
[2025-10-08 10:02:48] 2025-10-08 14:01:53,744 | INFO     | ..............................
[2025-10-08 10:02:48] 2025-10-08 14:01:53,826 | INFO     | 
[2025-10-08 10:02:48] 2025-10-08 14:01:53,826 | INFO     | job summary report
[2025-10-08 10:02:48] 2025-10-08 14:01:53,826 | INFO     | --------------------------------------------------
[2025-10-08 10:02:48] 2025-10-08 14:01:53,827 | INFO     | PanDA job id: 6831978316
[2025-10-08 10:02:48] 2025-10-08 14:01:53,827 | INFO     | task id: 46376905
[2025-10-08 10:02:48] 2025-10-08 14:01:53,827 | INFO     | errors: (none)
[2025-10-08 10:02:48] 2025-10-08 14:01:53,827 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-08 10:02:48] 2025-10-08 14:01:53,827 | INFO     | pilot state: finished 
[2025-10-08 10:02:48] 2025-10-08 14:01:53,827 | INFO     | transexitcode: 0
[2025-10-08 10:02:48] 2025-10-08 14:01:53,827 | INFO     | exeerrorcode: 0
[2025-10-08 10:02:48] 2025-10-08 14:01:53,828 | INFO     | exeerrordiag: 
[2025-10-08 10:02:48] 2025-10-08 14:01:53,828 | INFO     | exitcode: 0
[2025-10-08 10:02:48] 2025-10-08 14:01:53,828 | INFO     | exitmsg: OK
[2025-10-08 10:02:48] 2025-10-08 14:01:53,828 | INFO     | cpuconsumptiontime: 40932 s
[2025-10-08 10:02:48] 2025-10-08 14:01:53,828 | INFO     | nevents: 400
[2025-10-08 10:02:48] 2025-10-08 14:01:53,828 | INFO     | neventsw: 0
[2025-10-08 10:02:48] 2025-10-08 14:01:53,828 | INFO     | pid: 8207
[2025-10-08 10:02:48] 2025-10-08 14:01:53,828 | INFO     | pgrp: 8207
[2025-10-08 10:02:48] 2025-10-08 14:01:53,828 | INFO     | corecount: 12
[2025-10-08 10:02:48] 2025-10-08 14:01:53,829 | INFO     | event service: False
[2025-10-08 10:02:48] 2025-10-08 14:01:53,829 | INFO     | sizes: {0: 2348816, 5: 2349078, 11: 2349134, 3835: 2374913, 3836: 2383911, 3837: 2383967, 3842: 2384289}
[2025-10-08 10:02:48] 2025-10-08 14:01:53,829 | INFO     | --------------------------------------------------
[2025-10-08 10:02:48] 2025-10-08 14:01:53,829 | INFO     | 
[2025-10-08 10:02:48] 2025-10-08 14:01:53,829 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-10-08 10:02:48] 2025-10-08 14:01:53,852 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-08 10:02:48] 2025-10-08 14:01:53,853 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-08 10:02:48] 2025-10-08 14:01:53,853 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-08 10:02:48] 2025-10-08 14:01:53,853 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-08 10:02:48] 2025-10-08 14:01:53,853 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-08 10:02:48] 2025-10-08 14:01:53,854 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-08 10:02:48] 2025-10-08 14:01:53,854 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-08 10:02:48] 2025-10-08 14:01:53,854 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-08 10:02:48] 2025-10-08 14:01:53,854 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-08 10:02:48] 2025-10-08 14:01:53,854 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-08 10:02:48] 2025-10-08 14:01:53,854 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-08 10:02:48] 2025-10-08 14:01:53,855 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-08 10:02:48] 2025-10-08 14:01:53,855 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-08 10:02:48] 2025-10-08 14:01:53,855 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-08 10:02:48] 2025-10-08 14:01:53,855 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-08 10:02:48] 2025-10-08 14:01:53,855 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-08 10:02:48] 2025-10-08 14:01:53,855 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-08 10:02:48] 2025-10-08 14:01:53,856 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-08 10:02:48] 2025-10-08 14:01:53,856 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-08 10:02:48] 2025-10-08 14:01:53,856 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-08 10:02:48] 2025-10-08 14:01:53,856 | INFO     | job 6831978316 has completed (purged errors)
[2025-10-08 10:02:48] 2025-10-08 14:01:53,856 | INFO     | overall cleanup function is called
[2025-10-08 10:02:48] 2025-10-08 14:01:54,865 | INFO     | --- collectZombieJob: --- 10, [8207]
[2025-10-08 10:02:48] 2025-10-08 14:01:54,865 | INFO     | zombie collector waiting for pid 8207
[2025-10-08 10:02:48] 2025-10-08 14:01:54,865 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-08 10:02:48] 2025-10-08 14:01:54,865 | INFO     | collected zombie processes
[2025-10-08 10:02:48] 2025-10-08 14:01:54,865 | INFO     | will attempt to kill all subprocesses of pid=8207
[2025-10-08 10:02:48] 2025-10-08 14:01:54,957 | INFO     | process IDs to be killed: [8207] (in reverse order)
[2025-10-08 10:02:48] 2025-10-08 14:01:55,007 | WARNING  | found no corresponding commands to process id(s)
[2025-10-08 10:02:48] 2025-10-08 14:01:55,007 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-08 10:02:48] 2025-10-08 14:01:55,010 | INFO     | did not find any defunct processes belonging to 8207
[2025-10-08 10:02:48] 2025-10-08 14:01:55,013 | INFO     | did not find any defunct processes belonging to 8207
[2025-10-08 10:02:48] 2025-10-08 14:01:55,013 | INFO     | ready for new job
[2025-10-08 10:02:48] 2025-10-08 14:01:55,013 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-08 10:02:48] 2025-10-08 14:01:55,014 | INFO     | ***************************************
[2025-10-08 10:02:48] 2025-10-08 14:01:55,014 | INFO     | ***  PanDA Pilot version 3.10.5.57  ***
[2025-10-08 10:02:48] 2025-10-08 14:01:55,014 | INFO     | ***************************************
[2025-10-08 10:02:48] 2025-10-08 14:01:55,014 | INFO     | 
[2025-10-08 10:02:48] 2025-10-08 14:01:55,015 | INFO     | architecture information:
[2025-10-08 10:02:48] 2025-10-08 14:01:55,015 | INFO     | executing command: cat /etc/os-release
[2025-10-08 10:02:48] 2025-10-08 14:01:55,030 | INFO     | cat /etc/os-release:
[2025-10-08 10:02:48] NAME="CentOS Linux"
[2025-10-08 10:02:48] VERSION="7 (Core)"
[2025-10-08 10:02:48] ID="centos"
[2025-10-08 10:02:48] ID_LIKE="rhel fedora"
[2025-10-08 10:02:48] VERSION_ID="7"
[2025-10-08 10:02:48] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-08 10:02:48] ANSI_COLOR="0;31"
[2025-10-08 10:02:48] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-08 10:02:48] HOME_URL="https://www.centos.org/"
[2025-10-08 10:02:48] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-08 10:02:48] 
[2025-10-08 10:02:48] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-08 10:02:48] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-08 10:02:48] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-08 10:02:48] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-08 10:02:48] 
[2025-10-08 10:02:48] 2025-10-08 14:01:55,031 | INFO     | ***************************************
[2025-10-08 10:02:48] 2025-10-08 14:01:55,534 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-10-08 10:02:48] 2025-10-08 14:01:55,550 | INFO     | sufficient remaining disk space (29401022464 B)
[2025-10-08 10:02:48] 2025-10-08 14:01:55,550 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-08 10:02:48] 2025-10-08 14:01:55,551 | INFO     | current server update state: UPDATING_FINAL
[2025-10-08 10:02:48] 2025-10-08 14:01:55,551 | INFO     | update_server=False
[2025-10-08 10:02:48] 2025-10-08 14:01:55,551 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-08 10:02:48] 2025-10-08 14:01:55,551 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-08 10:02:48] 2025-10-08 14:01:55,552 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-08 10:02:48] 2025-10-08 14:01:55,578 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-08 10:02:48] 2025-10-08 14:01:55,745 | INFO     | all job control threads have been joined
[2025-10-08 10:02:48] 2025-10-08 14:01:55,766 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-10-08 10:02:48] 2025-10-08 14:01:55,767 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-10-08 10:02:48] 2025-10-08 14:01:55,767 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-08 10:02:48] 2025-10-08 14:01:55,767 | INFO     | will abort loop
[2025-10-08 10:02:48] 2025-10-08 14:01:56,293 | INFO     | all data control threads have been joined
[2025-10-08 10:02:48] 2025-10-08 14:01:56,424 | INFO     | all payload control threads have been joined
[2025-10-08 10:02:48] 2025-10-08 14:01:56,557 | INFO     | [job] retrieve thread has finished
[2025-10-08 10:02:48] 2025-10-08 14:01:56,557 | INFO     | [job] queue monitor thread has finished
[2025-10-08 10:02:48] 2025-10-08 14:01:56,671 | INFO     | [payload] failed_post thread has finished
[2025-10-08 10:02:48] 2025-10-08 14:01:56,680 | INFO     | [payload] execute_payloads thread has finished
[2025-10-08 10:02:48] 2025-10-08 14:01:56,751 | INFO     | [job] control thread has finished
[2025-10-08 10:02:48] 2025-10-08 14:01:56,772 | INFO     | [job] job monitor thread has finished
[2025-10-08 10:02:48] 2025-10-08 14:01:56,806 | INFO     | [data] copytool_in thread has finished
[2025-10-08 10:02:48] 2025-10-08 14:01:57,148 | INFO     | [job] validate thread has finished
[2025-10-08 10:02:48] 2025-10-08 14:01:57,299 | INFO     | [data] control thread has finished
[2025-10-08 10:02:48] 2025-10-08 14:01:57,359 | INFO     | [payload] validate_post thread has finished
[2025-10-08 10:02:48] 2025-10-08 14:01:57,415 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-08 10:02:48] 2025-10-08 14:01:57,429 | INFO     | [payload] control thread has finished
[2025-10-08 10:02:48] 2025-10-08 14:01:57,535 | INFO     | [job] create_data_payload thread has finished
[2025-10-08 10:02:48] 2025-10-08 14:01:57,583 | INFO     | [data] copytool_out thread has finished
[2025-10-08 10:02:48] 2025-10-08 14:01:57,760 | INFO     | [payload] validate_pre thread has finished
[2025-10-08 10:02:48] 2025-10-08 14:01:59,558 | INFO     | [data] queue_monitor thread has finished
[2025-10-08 10:02:48] 2025-10-08 14:02:25,136 | INFO     | PID=1610 has CPU usage=1.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-10-08 10:02:48] 2025-10-08 14:02:25,137 | INFO     | found 0 job(s) in 20 queues
[2025-10-08 10:02:48] 2025-10-08 14:02:25,137 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-08 10:02:48] 2025-10-08 14:02:25,137 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-08 10:02:48] 2025-10-08 14:02:41,108 | INFO     | [monitor] cgroup control has ended
[2025-10-08 10:02:48] 2025-10-08 14:02:43,009 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139783459014464)>', '<ExcThread(monitor, started 139782713759488)>']
[2025-10-08 10:02:48] 2025-10-08 14:02:43,218 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-08 10:02:48] 2025-10-08 14:02:43,218 | INFO     | [monitor] control thread has ended
[2025-10-08 10:02:48] 2025-10-08 14:02:48,021 | INFO     | all workflow threads have been joined
[2025-10-08 10:02:48] 2025-10-08 14:02:48,021 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-08 10:02:48] 2025-10-08 14:02:48,021 | INFO     | traces error code: 0
[2025-10-08 10:02:48] 2025-10-08 14:02:48,022 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-08 10:02:48] 2025-10-08 14:02:48,106 [wrapper] ==== pilot stdout END ====
[2025-10-08 10:02:48] 2025-10-08 14:02:48,109 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-08 10:02:48] 2025-10-08 14:02:48,113 [wrapper] pilotpid: 1610
[2025-10-08 10:02:48] 2025-10-08 14:02:48,117 [wrapper] Pilot exit status: 0
[2025-10-08 10:02:48] 2025-10-08 14:02:48,133 [wrapper] pandaids: 6831978316
[2025-10-08 10:02:48] 2025-10-08 14:02:48,181 [wrapper] cleanup supervisor_pilot 15834 1611
[2025-10-08 10:02:48] 2025-10-08 14:02:48,185 [wrapper] Test setup, not cleaning
[2025-10-08 10:02:48] 2025-10-08 14:02:48,189 [wrapper] apfmon messages muted
[2025-10-08 10:02:48] 2025-10-08 14:02:48,193 [wrapper] ==== wrapper stdout END ====
[2025-10-08 10:02:48] 2025-10-08 14:02:48,197 [wrapper] ==== wrapper stderr END ====
[2025-10-08 10:02:48]  *** Error codes and diagnostics ***
[2025-10-08 10:02:48]     "exeErrorCode": 0,
[2025-10-08 10:02:48]     "exeErrorDiag": "",
[2025-10-08 10:02:48]     "pilotErrorCode": 0,
[2025-10-08 10:02:48]     "pilotErrorDiag": "",
[2025-10-08 10:02:48]  *** Listing of results directory ***
[2025-10-08 10:02:48] total 385104
[2025-10-08 10:02:48] -rw-r--r-- 1 boincer umatlas    552446 Oct  5 17:37 pilot3.tar.gz
[2025-10-08 10:02:48] -rwx------ 1 boincer umatlas     36292 Oct  5 17:38 runpilot2-wrapper.sh
[2025-10-08 10:02:48] -rw-r--r-- 1 boincer umatlas      5112 Oct  5 17:38 queuedata.json
[2025-10-08 10:02:48] -rw-r--r-- 1 boincer umatlas       100 Oct  8 08:57 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-08 10:02:48] -rwxr-xr-x 1 boincer umatlas      7986 Oct  8 08:57 run_atlas
[2025-10-08 10:02:48] -rw-r--r-- 1 boincer umatlas       105 Oct  8 08:57 job.xml
[2025-10-08 10:02:48] -rw-r--r-- 2 boincer umatlas 212644486 Oct  8 08:57 EVNT.46376901._003577.pool.root.1
[2025-10-08 10:02:48] -rw-r--r-- 2 boincer umatlas     15120 Oct  8 08:57 start_atlas.sh
[2025-10-08 10:02:48] drwxrwx--x 2 boincer umatlas      4096 Oct  8 08:57 shared
[2025-10-08 10:02:48] -rw-r--r-- 2 boincer umatlas    565600 Oct  8 08:57 input.tar.gz
[2025-10-08 10:02:48] -rw-r--r-- 1 boincer umatlas         0 Oct  8 08:57 boinc_lockfile
[2025-10-08 10:02:48] -rw-r--r-- 1 boincer umatlas      2519 Oct  8 08:57 pandaJob.out
[2025-10-08 10:02:48] -rw------- 1 boincer umatlas    979337 Oct  8 08:57 agis_schedconf.cvmfs.json
[2025-10-08 10:02:48] -rw------- 1 boincer umatlas   1560401 Oct  8 08:57 agis_ddmendpoints.agis.ALL.json
[2025-10-08 10:02:48] drwx------ 4 boincer umatlas      4096 Oct  8 08:57 pilot3
[2025-10-08 10:02:48] -rw-r--r-- 1 boincer umatlas      5952 Oct  8 09:58 init_data.xml
[2025-10-08 10:02:48] -rw------- 1 boincer umatlas 175901807 Oct  8 10:01 HITS.46376905._096917.pool.root.1
[2025-10-08 10:02:48] -rw-r--r-- 1 boincer umatlas       529 Oct  8 10:01 boinc_task_state.xml
[2025-10-08 10:02:48] -rw------- 1 boincer umatlas      1046 Oct  8 10:01 memory_monitor_summary.json
[2025-10-08 10:02:48] -rw------- 1 boincer umatlas    388080 Oct  8 10:01 log.46376905._096917.job.log.tgz.1
[2025-10-08 10:02:48] -rw------- 1 boincer umatlas      7858 Oct  8 10:01 heartbeat.json
[2025-10-08 10:02:48] -rw------- 1 boincer umatlas        95 Oct  8 10:02 pilot_heartbeat.json
[2025-10-08 10:02:48] -rw-r--r-- 1 boincer umatlas      8192 Oct  8 10:02 boinc_mmap_file
[2025-10-08 10:02:48] -rw-r--r-- 1 boincer umatlas        27 Oct  8 10:02 wrapper_checkpoint.txt
[2025-10-08 10:02:48] -rw------- 1 boincer umatlas      4931 Oct  8 10:02 pilotlog.txt
[2025-10-08 10:02:48] -rw------- 1 boincer umatlas    564419 Oct  8 10:02 log.46376905._096917.job.log.1
[2025-10-08 10:02:48] -rw------- 1 boincer umatlas       357 Oct  8 10:02 output.list
[2025-10-08 10:02:48] -rw-r--r-- 1 boincer umatlas       620 Oct  8 10:02 runtime_log
[2025-10-08 10:02:48] -rw------- 1 boincer umatlas    972800 Oct  8 10:02 result.tar.gz
[2025-10-08 10:02:48] -rw------- 1 boincer umatlas       659 Oct  8 10:02 tRFKDmmblP8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmzHRNDmWrMlCn.diag
[2025-10-08 10:02:48] -rw-r--r-- 1 boincer umatlas      8705 Oct  8 10:02 runtime_log.err
[2025-10-08 10:02:48] -rw-r--r-- 1 boincer umatlas     22177 Oct  8 10:02 stderr.txt
[2025-10-08 10:02:48] HITS file was successfully produced:
[2025-10-08 10:02:48] -rw------- 1 boincer umatlas 175901807 Oct  8 10:01 shared/HITS.pool.root.1
[2025-10-08 10:02:48]  *** Contents of shared directory: ***
[2025-10-08 10:02:48] total 380976
[2025-10-08 10:02:48] -rw-r--r-- 2 boincer umatlas 212644486 Oct  8 08:57 ATLAS.root_0
[2025-10-08 10:02:48] -rw-r--r-- 2 boincer umatlas     15120 Oct  8 08:57 start_atlas.sh
[2025-10-08 10:02:48] -rw-r--r-- 2 boincer umatlas    565600 Oct  8 08:57 input.tar.gz
[2025-10-08 10:02:48] -rw------- 1 boincer umatlas 175901807 Oct  8 10:01 HITS.pool.root.1
[2025-10-08 10:02:48] -rw------- 1 boincer umatlas    972800 Oct  8 10:02 result.tar.gz
10:02:49 (29983): run_atlas exited; CPU time 40900.454320
10:02:49 (29983): called boinc_finish(0)

</stderr_txt>
]]>

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