Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
08:50:15 (9080): wrapper (7.7.26015): starting
08:50:15 (9080): wrapper: running run_atlas (--nthreads 12)
[2025-10-08 08:50:15] Arguments: --nthreads 12
[2025-10-08 08:50:15] Threads: 12
[2025-10-08 08:50:15] Checking for CVMFS
[2025-10-08 08:50:15] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-08 08:50:15] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-08 08:50:15] Running cvmfs_config stat atlas.cern.ch
[2025-10-08 08:50:15] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-08 08:50:15] 2.11.2.0 2998 32856 90008 151472 1 56 19351826 20275201 1 130560 0 18628716 99.990 1061582 45141 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-08 08:50:15] CVMFS is ok
[2025-10-08 08:50:15] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-08 08:50:15] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-08 08:50:15] Further information can be found at the LHC@home message board.
[2025-10-08 08:50:15] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-08 08:50:15] Checking for apptainer binary...
[2025-10-08 08:50:15] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-08 08:50:15] Running /usr/bin/apptainer --version
[2025-10-08 08:50:15] apptainer version 1.3.2-1.el7
[2025-10-08 08:50:15] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-08 08:50:17] c-205-12.aglt2.org
[2025-10-08 08:50:17] apptainer works
[2025-10-08 08:50:17] Set ATHENA_PROC_NUMBER=12
[2025-10-08 08:50:17] Set ATHENA_CORE_NUMBER=12
[2025-10-08 08:50:17] Starting ATLAS job with PandaID=6835981536
[2025-10-08 08:50:17] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-08 10:00:57]  *** The last 200 lines of the pilot log: ***
[2025-10-08 10:00:57] 2025-10-08 14:00:15,875 | INFO     | stage-out finished correctly
[2025-10-08 10:00:57] 2025-10-08 14:00:15,960 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-08 10:00:57] 2025-10-08 14:00:17,288 | WARNING  | process 19118 can no longer be monitored (due to stat problems) - aborting
[2025-10-08 10:00:57] 2025-10-08 14:00:17,288 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6835981536/memory_monitor_summary.json (trf name=prmon)
[2025-10-08 10:00:57] 2025-10-08 14:00:17,289 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6835981536/memory_monitor_summary.json (trf name=prmon)
[2025-10-08 10:00:57] 2025-10-08 14:00:17,289 | WARNING  | memory limits not set in config, using defaults: 'NoneType' object has no attribute 'get'
[2025-10-08 10:00:57] 2025-10-08 14:00:17,290 | WARNING  | maxPSS not found in memory monitor output
[2025-10-08 10:00:57] 2025-10-08 14:00:17,290 | INFO     | payload log (log.EVNTtoHITS) within allowed size limit (2147483648 B): 3798719 B
[2025-10-08 10:00:57] 2025-10-08 14:00:17,290 | INFO     | payload log (payload.stdout) within allowed size limit (2147483648 B): 15538 B
[2025-10-08 10:00:57] 2025-10-08 14:00:17,290 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-10-08 10:00:57] 2025-10-08 14:00:17,308 | INFO     | sufficient remaining disk space (29367468032 B)
[2025-10-08 10:00:57] 2025-10-08 14:00:17,309 | INFO     | work directory size check will use 2537553920 B as a max limit (10% grace limit added)
[2025-10-08 10:00:57] 2025-10-08 14:00:17,310 | INFO     | size of work directory /tmp/boinchome/slots/0/PanDA_Pilot-6835981536: 4094385 B (within 2537553920 B limit)
[2025-10-08 10:00:57] 2025-10-08 14:00:17,310 | INFO     | pfn file=/tmp/boinchome/slots/0/PanDA_Pilot-6835981536/HITS.46676269._004408.pool.root.1 does not exist (skip from workdir size calculation)
[2025-10-08 10:00:57] 2025-10-08 14:00:17,310 | INFO     | total size of present files: 0 B (workdir size: 4094385 B)
[2025-10-08 10:00:57] 2025-10-08 14:00:17,310 | INFO     | output file size check: skipping output file /tmp/boinchome/slots/0/PanDA_Pilot-6835981536/HITS.46676269._004408.pool.root.1 since it does not exist
[2025-10-08 10:00:57] 2025-10-08 14:00:17,397 | INFO     | number of running child processes to parent process 19118: 1
[2025-10-08 10:00:57] 2025-10-08 14:00:17,397 | INFO     | maximum number of monitored processes: 6
[2025-10-08 10:00:57] 2025-10-08 14:00:17,589 | INFO     | time since job start (4185s) is within the limit (172800.0s)
[2025-10-08 10:00:57] 2025-10-08 14:00:18,030 | INFO     | job 6835981536 has state=finished
[2025-10-08 10:00:57] 2025-10-08 14:00:18,030 | INFO     | preparing for final server update for job 6835981536 in state='finished'
[2025-10-08 10:00:57] 2025-10-08 14:00:18,031 | INFO     | this job has now completed (state=finished)
[2025-10-08 10:00:57] 2025-10-08 14:00:18,031 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-08 10:00:57] 2025-10-08 14:00:18,031 | INFO     | log transfer has been attempted: DONE
[2025-10-08 10:00:57] 2025-10-08 14:00:18,031 | INFO     | job 6835981536 has finished - writing final server update
[2025-10-08 10:00:57] 2025-10-08 14:00:18,031 | INFO     | total number of processed events: 400 (read)
[2025-10-08 10:00:57] 2025-10-08 14:00:18,032 | INFO     | executing command: lscpu
[2025-10-08 10:00:57] 2025-10-08 14:00:18,060 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-08 10:00:57] 2025-10-08 14:00:19,590 | INFO     | time since job start (4187s) is within the limit (172800.0s)
[2025-10-08 10:00:57] 2025-10-08 14:00:19,900 | INFO     | monitor loop #313: job 0:6835981536 is in state 'finished'
[2025-10-08 10:00:57] 2025-10-08 14:00:19,901 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-08 10:00:57] 2025-10-08 14:00:21,595 | INFO     | time since job start (4189s) is within the limit (172800.0s)
[2025-10-08 10:00:57] 2025-10-08 14:00:22,404 | INFO     | monitor loop #314: job 0:6835981536 is in state 'finished'
[2025-10-08 10:00:57] 2025-10-08 14:00:22,404 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-08 10:00:57] 2025-10-08 14:00:23,596 | INFO     | time since job start (4191s) is within the limit (172800.0s)
[2025-10-08 10:00:57] 2025-10-08 14:00:24,137 | INFO     | CPU arch script returned: x86-64-v2
[2025-10-08 10:00:57] 2025-10-08 14:00:24,141 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1684.75
[2025-10-08 10:00:57] 2025-10-08 14:00:24,145 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6835981536/memory_monitor_summary.json (trf name=prmon)
[2025-10-08 10:00:57] 2025-10-08 14:00:24,146 | INFO     | extracted standard info from prmon json
[2025-10-08 10:00:57] 2025-10-08 14:00:24,146 | INFO     | extracted standard memory fields from prmon json
[2025-10-08 10:00:57] 2025-10-08 14:00:24,147 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-08 10:00:57] 2025-10-08 14:00:24,147 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-08 10:00:57] 2025-10-08 14:00:24,147 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-08 10:00:57] 2025-10-08 14:00:24,149 | INFO     | fitting pss+swap vs Time
[2025-10-08 10:00:57] 2025-10-08 14:00:24,150 | INFO     | sum of square deviations: 70364110.0
[2025-10-08 10:00:57] 2025-10-08 14:00:24,150 | INFO     | sum of deviations: -5906016583.999997
[2025-10-08 10:00:57] 2025-10-08 14:00:24,150 | INFO     | mean x: 1759929997.0
[2025-10-08 10:00:57] 2025-10-08 14:00:24,151 | INFO     | mean y: 2791629.1967213117
[2025-10-08 10:00:57] 2025-10-08 14:00:24,151 | INFO     | -- intersect: 147722641265.05603
[2025-10-08 10:00:57] 2025-10-08 14:00:24,151 | INFO     | intersect: 147722641265.05603
[2025-10-08 10:00:57] 2025-10-08 14:00:24,151 | INFO     | chi2: 0.043358779418072146
[2025-10-08 10:00:57] 2025-10-08 14:00:24,151 | INFO     | -- intersect: 147722641265.05603
[2025-10-08 10:00:57] 2025-10-08 14:00:24,151 | INFO     | current memory leak: -83.94 B/s (using 61 data points, chi2=0.04)
[2025-10-08 10:00:57] 2025-10-08 14:00:24,152 | INFO     | could have reported an average CPU frequency of 2058 MHz (6 samples)
[2025-10-08 10:00:57] 2025-10-08 14:00:24,152 | INFO     | ..............................
[2025-10-08 10:00:57] 2025-10-08 14:00:24,152 | INFO     | . Timing measurements:
[2025-10-08 10:00:57] 2025-10-08 14:00:24,152 | INFO     | . get job = 0 s
[2025-10-08 10:00:57] 2025-10-08 14:00:24,152 | INFO     | . initial setup = 2 s
[2025-10-08 10:00:57] 2025-10-08 14:00:24,152 | INFO     | . payload setup = 7 s
[2025-10-08 10:00:57] 2025-10-08 14:00:24,152 | INFO     | . stage-in = 0 s
[2025-10-08 10:00:57] 2025-10-08 14:00:24,152 | INFO     | . payload execution = 4153 s
[2025-10-08 10:00:57] 2025-10-08 14:00:24,152 | INFO     | . stage-out = 0 s
[2025-10-08 10:00:57] 2025-10-08 14:00:24,152 | INFO     | . log creation = 0 s
[2025-10-08 10:00:57] 2025-10-08 14:00:24,153 | INFO     | ..............................
[2025-10-08 10:00:57] 2025-10-08 14:00:24,499 | INFO     | 
[2025-10-08 10:00:57] 2025-10-08 14:00:24,500 | INFO     | job summary report
[2025-10-08 10:00:57] 2025-10-08 14:00:24,500 | INFO     | --------------------------------------------------
[2025-10-08 10:00:57] 2025-10-08 14:00:24,500 | INFO     | PanDA job id: 6835981536
[2025-10-08 10:00:57] 2025-10-08 14:00:24,500 | INFO     | task id: 46676269
[2025-10-08 10:00:57] 2025-10-08 14:00:24,500 | INFO     | errors: (none)
[2025-10-08 10:00:57] 2025-10-08 14:00:24,500 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-08 10:00:57] 2025-10-08 14:00:24,501 | INFO     | pilot state: finished 
[2025-10-08 10:00:57] 2025-10-08 14:00:24,501 | INFO     | transexitcode: 0
[2025-10-08 10:00:57] 2025-10-08 14:00:24,501 | INFO     | exeerrorcode: 0
[2025-10-08 10:00:57] 2025-10-08 14:00:24,501 | INFO     | exeerrordiag: 
[2025-10-08 10:00:57] 2025-10-08 14:00:24,501 | INFO     | exitcode: 0
[2025-10-08 10:00:57] 2025-10-08 14:00:24,501 | INFO     | exitmsg: OK
[2025-10-08 10:00:57] 2025-10-08 14:00:24,501 | INFO     | cpuconsumptiontime: 45075 s
[2025-10-08 10:00:57] 2025-10-08 14:00:24,501 | INFO     | nevents: 400
[2025-10-08 10:00:57] 2025-10-08 14:00:24,502 | INFO     | neventsw: 0
[2025-10-08 10:00:57] 2025-10-08 14:00:24,502 | INFO     | pid: 19118
[2025-10-08 10:00:57] 2025-10-08 14:00:24,502 | INFO     | pgrp: 19118
[2025-10-08 10:00:57] 2025-10-08 14:00:24,502 | INFO     | corecount: 12
[2025-10-08 10:00:57] 2025-10-08 14:00:24,502 | INFO     | event service: False
[2025-10-08 10:00:57] 2025-10-08 14:00:24,502 | INFO     | sizes: {0: 2348849, 1: 2348849, 5: 2349139, 11: 2349195, 4164: 2375061, 4165: 2375060, 4167: 2384298, 4175: 2384464}
[2025-10-08 10:00:57] 2025-10-08 14:00:24,502 | INFO     | --------------------------------------------------
[2025-10-08 10:00:57] 2025-10-08 14:00:24,503 | INFO     | 
[2025-10-08 10:00:57] 2025-10-08 14:00:24,503 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-10-08 10:00:57] 2025-10-08 14:00:24,528 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-08 10:00:57] 2025-10-08 14:00:24,529 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-08 10:00:57] 2025-10-08 14:00:24,529 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-08 10:00:57] 2025-10-08 14:00:24,529 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-08 10:00:57] 2025-10-08 14:00:24,529 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-08 10:00:57] 2025-10-08 14:00:24,529 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-08 10:00:57] 2025-10-08 14:00:24,530 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-08 10:00:57] 2025-10-08 14:00:24,530 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-08 10:00:57] 2025-10-08 14:00:24,530 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-08 10:00:57] 2025-10-08 14:00:24,530 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-08 10:00:57] 2025-10-08 14:00:24,530 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-08 10:00:57] 2025-10-08 14:00:24,530 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-08 10:00:57] 2025-10-08 14:00:24,531 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-08 10:00:57] 2025-10-08 14:00:24,531 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-08 10:00:57] 2025-10-08 14:00:24,531 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-08 10:00:57] 2025-10-08 14:00:24,531 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-08 10:00:57] 2025-10-08 14:00:24,531 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-08 10:00:57] 2025-10-08 14:00:24,531 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-08 10:00:57] 2025-10-08 14:00:24,532 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-08 10:00:57] 2025-10-08 14:00:24,532 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-08 10:00:57] 2025-10-08 14:00:24,532 | INFO     | job 6835981536 has completed (purged errors)
[2025-10-08 10:00:57] 2025-10-08 14:00:24,532 | INFO     | overall cleanup function is called
[2025-10-08 10:00:57] 2025-10-08 14:00:24,715 | INFO     | PID=12759 has CPU usage=7.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-08 10:00:57] 2025-10-08 14:00:25,540 | INFO     | --- collectZombieJob: --- 10, [19118]
[2025-10-08 10:00:57] 2025-10-08 14:00:25,540 | INFO     | zombie collector waiting for pid 19118
[2025-10-08 10:00:57] 2025-10-08 14:00:25,540 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-08 10:00:57] 2025-10-08 14:00:25,540 | INFO     | collected zombie processes
[2025-10-08 10:00:57] 2025-10-08 14:00:25,541 | INFO     | will attempt to kill all subprocesses of pid=19118
[2025-10-08 10:00:57] 2025-10-08 14:00:25,631 | INFO     | process IDs to be killed: [19118] (in reverse order)
[2025-10-08 10:00:57] 2025-10-08 14:00:25,681 | WARNING  | found no corresponding commands to process id(s)
[2025-10-08 10:00:57] 2025-10-08 14:00:25,681 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-08 10:00:57] 2025-10-08 14:00:25,685 | INFO     | did not find any defunct processes belonging to 19118
[2025-10-08 10:00:57] 2025-10-08 14:00:25,688 | INFO     | did not find any defunct processes belonging to 19118
[2025-10-08 10:00:57] 2025-10-08 14:00:25,689 | INFO     | ready for new job
[2025-10-08 10:00:57] 2025-10-08 14:00:25,689 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-08 10:00:57] 2025-10-08 14:00:25,690 | INFO     | ***************************************
[2025-10-08 10:00:57] 2025-10-08 14:00:25,691 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-08 10:00:57] 2025-10-08 14:00:25,691 | INFO     | ***************************************
[2025-10-08 10:00:57] 2025-10-08 14:00:25,691 | INFO     | 
[2025-10-08 10:00:57] 2025-10-08 14:00:25,691 | INFO     | architecture information:
[2025-10-08 10:00:57] 2025-10-08 14:00:25,692 | INFO     | executing command: cat /etc/os-release
[2025-10-08 10:00:57] 2025-10-08 14:00:25,707 | INFO     | cat /etc/os-release:
[2025-10-08 10:00:57] NAME="CentOS Linux"
[2025-10-08 10:00:57] VERSION="7 (Core)"
[2025-10-08 10:00:57] ID="centos"
[2025-10-08 10:00:57] ID_LIKE="rhel fedora"
[2025-10-08 10:00:57] VERSION_ID="7"
[2025-10-08 10:00:57] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-08 10:00:57] ANSI_COLOR="0;31"
[2025-10-08 10:00:57] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-08 10:00:57] HOME_URL="https://www.centos.org/"
[2025-10-08 10:00:57] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-08 10:00:57] 
[2025-10-08 10:00:57] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-08 10:00:57] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-08 10:00:57] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-08 10:00:57] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-08 10:00:57] 
[2025-10-08 10:00:57] 2025-10-08 14:00:25,707 | INFO     | ***************************************
[2025-10-08 10:00:57] 2025-10-08 14:00:26,210 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-10-08 10:00:57] 2025-10-08 14:00:26,227 | INFO     | sufficient remaining disk space (29372710912 B)
[2025-10-08 10:00:57] 2025-10-08 14:00:26,228 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-08 10:00:57] 2025-10-08 14:00:26,228 | INFO     | current server update state: UPDATING_FINAL
[2025-10-08 10:00:57] 2025-10-08 14:00:26,228 | INFO     | update_server=False
[2025-10-08 10:00:57] 2025-10-08 14:00:26,228 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-08 10:00:57] 2025-10-08 14:00:26,228 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-08 10:00:57] 2025-10-08 14:00:26,229 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-08 10:00:57] 2025-10-08 14:00:26,229 | INFO     | aborting loop
[2025-10-08 10:00:57] 2025-10-08 14:00:26,473 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-08 10:00:57] 2025-10-08 14:00:26,552 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-08 10:00:57] 2025-10-08 14:00:26,873 | INFO     | all payload control threads have been joined
[2025-10-08 10:00:57] 2025-10-08 14:00:27,230 | INFO     | [job] queue monitor thread has finished
[2025-10-08 10:00:57] 2025-10-08 14:00:27,234 | INFO     | [job] retrieve thread has finished
[2025-10-08 10:00:57] 2025-10-08 14:00:27,234 | INFO     | [job] job monitor thread has finished
[2025-10-08 10:00:57] 2025-10-08 14:00:27,241 | INFO     | all data control threads have been joined
[2025-10-08 10:00:57] 2025-10-08 14:00:27,481 | INFO     | [job] create_data_payload thread has finished
[2025-10-08 10:00:57] 2025-10-08 14:00:27,553 | INFO     | [payload] validate_post thread has finished
[2025-10-08 10:00:57] 2025-10-08 14:00:27,599 | INFO     | [payload] validate_pre thread has finished
[2025-10-08 10:00:57] 2025-10-08 14:00:27,627 | INFO     | [payload] execute_payloads thread has finished
[2025-10-08 10:00:57] 2025-10-08 14:00:27,836 | INFO     | all job control threads have been joined
[2025-10-08 10:00:57] 2025-10-08 14:00:27,878 | INFO     | [payload] control thread has finished
[2025-10-08 10:00:57] 2025-10-08 14:00:28,016 | INFO     | [data] copytool_in thread has finished
[2025-10-08 10:00:57] 2025-10-08 14:00:28,246 | INFO     | [data] control thread has finished
[2025-10-08 10:00:57] 2025-10-08 14:00:28,478 | INFO     | [data] copytool_out thread has finished
[2025-10-08 10:00:57] 2025-10-08 14:00:28,535 | INFO     | [payload] failed_post thread has finished
[2025-10-08 10:00:57] 2025-10-08 14:00:28,687 | INFO     | [job] validate thread has finished
[2025-10-08 10:00:57] 2025-10-08 14:00:28,842 | INFO     | [job] control thread has finished
[2025-10-08 10:00:57] 2025-10-08 14:00:30,554 | INFO     | [data] queue_monitor thread has finished
[2025-10-08 10:00:57] 2025-10-08 14:00:36,549 | INFO     | job.realtimelogging is not enabled
[2025-10-08 10:00:57] 2025-10-08 14:00:37,555 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-08 10:00:57] 2025-10-08 14:00:38,808 | INFO     | [monitor] cgroup control has ended
[2025-10-08 10:00:57] 2025-10-08 14:00:40,403 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139701146376000)>', '<ExcThread(monitor, started 139700572509952)>']
[2025-10-08 10:00:57] 2025-10-08 14:00:45,416 | INFO     | all workflow threads have been joined
[2025-10-08 10:00:57] 2025-10-08 14:00:45,417 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-08 10:00:57] 2025-10-08 14:00:45,417 | INFO     | traces error code: 0
[2025-10-08 10:00:57] 2025-10-08 14:00:45,417 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-08 10:00:57] 2025-10-08 14:00:56,906 | INFO     | PID=12759 has CPU usage=0.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-08 10:00:57] 2025-10-08 14:00:56,907 | INFO     | found 0 job(s) in 20 queues
[2025-10-08 10:00:57] 2025-10-08 14:00:56,907 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-08 10:00:57] 2025-10-08 14:00:56,907 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-08 10:00:57] 2025-10-08 14:00:56,907 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-08 10:00:57] 2025-10-08 14:00:56,907 | INFO     | [monitor] control thread has ended
[2025-10-08 10:00:57] 2025-10-08 14:00:56,993 [wrapper] ==== pilot stdout END ====
[2025-10-08 10:00:57] 2025-10-08 14:00:56,997 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-08 10:00:57] 2025-10-08 14:00:57,001 [wrapper] pilotpid: 12759
[2025-10-08 10:00:57] 2025-10-08 14:00:57,004 [wrapper] Pilot exit status: 0
[2025-10-08 10:00:57] 2025-10-08 14:00:57,019 [wrapper] pandaids: 6835981536
[2025-10-08 10:00:57] 2025-10-08 14:00:57,062 [wrapper] cleanup supervisor_pilot 19150 12760
[2025-10-08 10:00:57] 2025-10-08 14:00:57,066 [wrapper] Test setup, not cleaning
[2025-10-08 10:00:57] 2025-10-08 14:00:57,070 [wrapper] apfmon messages muted
[2025-10-08 10:00:57] 2025-10-08 14:00:57,074 [wrapper] ==== wrapper stdout END ====
[2025-10-08 10:00:57] 2025-10-08 14:00:57,077 [wrapper] ==== wrapper stderr END ====
[2025-10-08 10:00:57]  *** Error codes and diagnostics ***
[2025-10-08 10:00:57]     "exeErrorCode": 0,
[2025-10-08 10:00:57]     "exeErrorDiag": "",
[2025-10-08 10:00:57]     "pilotErrorCode": 0,
[2025-10-08 10:00:57]     "pilotErrorDiag": "",
[2025-10-08 10:00:57]  *** Listing of results directory ***
[2025-10-08 10:00:57] total 404632
[2025-10-08 10:00:57] -rw-r--r-- 1 boincer umatlas    557409 Oct  8 05:48 pilot3.tar.gz
[2025-10-08 10:00:57] -rw-r--r-- 1 boincer umatlas      5112 Oct  8 05:58 queuedata.json
[2025-10-08 10:00:57] -rwx------ 1 boincer umatlas     36292 Oct  8 05:58 runpilot2-wrapper.sh
[2025-10-08 10:00:57] -rw-r--r-- 1 boincer umatlas       100 Oct  8 08:50 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-08 10:00:57] -rwxr-xr-x 1 boincer umatlas      7986 Oct  8 08:50 run_atlas
[2025-10-08 10:00:57] -rw-r--r-- 1 boincer umatlas       105 Oct  8 08:50 job.xml
[2025-10-08 10:00:57] -rw-r--r-- 2 boincer umatlas 219577428 Oct  8 08:50 EVNT.46676267._000181.pool.root.1
[2025-10-08 10:00:57] -rw-r--r-- 2 boincer umatlas     15120 Oct  8 08:50 start_atlas.sh
[2025-10-08 10:00:57] drwxrwx--x 2 boincer umatlas      4096 Oct  8 08:50 shared
[2025-10-08 10:00:57] -rw-r--r-- 2 boincer umatlas    569679 Oct  8 08:50 input.tar.gz
[2025-10-08 10:00:57] -rw-r--r-- 1 boincer umatlas         0 Oct  8 08:50 boinc_lockfile
[2025-10-08 10:00:57] -rw-r--r-- 1 boincer umatlas      2546 Oct  8 08:50 pandaJob.out
[2025-10-08 10:00:57] -rw------- 1 boincer umatlas    979337 Oct  8 08:50 agis_schedconf.cvmfs.json
[2025-10-08 10:00:57] -rw------- 1 boincer umatlas   1560401 Oct  8 08:50 agis_ddmendpoints.agis.ALL.json
[2025-10-08 10:00:57] drwx------ 5 boincer umatlas      4096 Oct  8 08:50 pilot3
[2025-10-08 10:00:57] -rw-r--r-- 1 boincer umatlas      5953 Oct  8 09:56 init_data.xml
[2025-10-08 10:00:57] -rw------- 1 boincer umatlas 188902132 Oct  8 09:59 HITS.46676269._004408.pool.root.1
[2025-10-08 10:00:57] -rw------- 1 boincer umatlas      1045 Oct  8 10:00 memory_monitor_summary.json
[2025-10-08 10:00:57] -rw-r--r-- 1 boincer umatlas       529 Oct  8 10:00 boinc_task_state.xml
[2025-10-08 10:00:57] -rw------- 1 boincer umatlas    365842 Oct  8 10:00 log.46676269._004408.job.log.tgz.1
[2025-10-08 10:00:57] -rw------- 1 boincer umatlas      7846 Oct  8 10:00 heartbeat.json
[2025-10-08 10:00:57] -rw-r--r-- 1 boincer umatlas      8192 Oct  8 10:00 boinc_mmap_file
[2025-10-08 10:00:57] -rw-r--r-- 1 boincer umatlas        27 Oct  8 10:00 wrapper_checkpoint.txt
[2025-10-08 10:00:57] -rw------- 1 boincer umatlas       745 Oct  8 10:00 pilotlog.txt
[2025-10-08 10:00:57] -rw------- 1 boincer umatlas        95 Oct  8 10:00 pilot_heartbeat.json
[2025-10-08 10:00:57] -rw------- 1 boincer umatlas    613480 Oct  8 10:00 log.46676269._004408.job.log.1
[2025-10-08 10:00:57] -rw------- 1 boincer umatlas       357 Oct  8 10:00 output.list
[2025-10-08 10:00:57] -rw-r--r-- 1 boincer umatlas       620 Oct  8 10:00 runtime_log
[2025-10-08 10:00:57] -rw------- 1 boincer umatlas   1003520 Oct  8 10:00 result.tar.gz
[2025-10-08 10:00:57] -rw------- 1 boincer umatlas       659 Oct  8 10:00 sHYNDmu7fQ8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmhtXNDmAGGdxn.diag
[2025-10-08 10:00:57] -rw-r--r-- 1 boincer umatlas      8705 Oct  8 10:00 runtime_log.err
[2025-10-08 10:00:57] -rw-r--r-- 1 boincer umatlas     22474 Oct  8 10:00 stderr.txt
[2025-10-08 10:00:57] HITS file was successfully produced:
[2025-10-08 10:00:57] -rw------- 1 boincer umatlas 188902132 Oct  8 09:59 shared/HITS.pool.root.1
[2025-10-08 10:00:57]  *** Contents of shared directory: ***
[2025-10-08 10:00:57] total 400472
[2025-10-08 10:00:57] -rw-r--r-- 2 boincer umatlas 219577428 Oct  8 08:50 ATLAS.root_0
[2025-10-08 10:00:57] -rw-r--r-- 2 boincer umatlas     15120 Oct  8 08:50 start_atlas.sh
[2025-10-08 10:00:57] -rw-r--r-- 2 boincer umatlas    569679 Oct  8 08:50 input.tar.gz
[2025-10-08 10:00:57] -rw------- 1 boincer umatlas 188902132 Oct  8 09:59 HITS.pool.root.1
[2025-10-08 10:00:57] -rw------- 1 boincer umatlas   1003520 Oct  8 10:00 result.tar.gz
10:00:58 (9080): run_atlas exited; CPU time 45067.896976
10:00:58 (9080): called boinc_finish(0)

</stderr_txt>
]]>

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