Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
05:45:22 (3447594): wrapper (7.7.26015): starting
05:45:22 (3447594): wrapper: running run_atlas (--nthreads 4)
[2025-10-12 05:45:22] Arguments: --nthreads 4
[2025-10-12 05:45:22] Threads: 4
[2025-10-12 05:45:22] Checking for CVMFS
[2025-10-12 05:45:22] No cvmfs_config command found, will try listing directly
[2025-10-12 05:45:22] CVMFS is ok
[2025-10-12 05:45:22] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 05:45:22] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 05:45:22] Further information can be found at the LHC@home message board.
[2025-10-12 05:45:22] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 05:45:22] Checking for apptainer binary...
[2025-10-12 05:45:22] which: no apptainer in ((null))
[2025-10-12 05:45:22] apptainer is not installed, using version from CVMFS
[2025-10-12 05:45:22] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 05:45:22] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot112/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut17.grid.cesnet.cz
[2025-10-12 05:45:22] apptainer works
[2025-10-12 05:45:22] Set ATHENA_PROC_NUMBER=4
[2025-10-12 05:45:22] Set ATHENA_CORE_NUMBER=4
[2025-10-12 05:45:22] Starting ATLAS job with PandaID=6835984564
[2025-10-12 05:45:22] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot112/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 09:35:45]  *** The last 200 lines of the pilot log: ***
[2025-10-12 09:35:45] 2025-10-12 06:28:05,207 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-12 09:35:45] 2025-10-12 06:28:05,263 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 2727.1449531249996
[2025-10-12 09:35:45] 2025-10-12 06:28:05,293 | INFO     | using path: /scratch/boinc/var/slot112/slots/0/PanDA_Pilot-6835984564/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 09:35:45] 2025-10-12 06:28:05,294 | INFO     | extracted standard info from prmon json
[2025-10-12 09:35:45] 2025-10-12 06:28:05,294 | INFO     | extracted standard memory fields from prmon json
[2025-10-12 09:35:45] 2025-10-12 06:28:05,294 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-12 09:35:45] 2025-10-12 06:28:05,294 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-12 09:35:45] 2025-10-12 06:28:05,295 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-12 09:35:45] 2025-10-12 06:28:05,298 | INFO     | fitting pss+swap vs Time
[2025-10-12 09:35:45] 2025-10-12 06:28:05,298 | INFO     | sum of square deviations: 1246386160.0
[2025-10-12 09:35:45] 2025-10-12 06:28:05,299 | INFO     | sum of deviations: 19089871798.0
[2025-10-12 09:35:45] 2025-10-12 06:28:05,299 | INFO     | mean x: 1760245591.0
[2025-10-12 09:35:45] 2025-10-12 06:28:05,299 | INFO     | mean y: 2304889.6666666665
[2025-10-12 09:35:45] 2025-10-12 06:28:05,299 | INFO     | -- intersect: -26957929220.430275
[2025-10-12 09:35:45] 2025-10-12 06:28:05,299 | INFO     | intersect: -26957929220.430275
[2025-10-12 09:35:45] 2025-10-12 06:28:05,300 | INFO     | chi2: 1.3269644496868467
[2025-10-12 09:35:45] 2025-10-12 06:28:05,300 | INFO     | sum of square deviations: 1132458442.5
[2025-10-12 09:35:45] 2025-10-12 06:28:05,301 | INFO     | sum of deviations: 18361294416.5
[2025-10-12 09:35:45] 2025-10-12 06:28:05,301 | INFO     | mean x: 1760245438.5
[2025-10-12 09:35:45] 2025-10-12 06:28:05,301 | INFO     | mean y: 2303914.7337662335
[2025-10-12 09:35:45] 2025-10-12 06:28:05,301 | INFO     | -- intersect: -28537714445.89552
[2025-10-12 09:35:45] 2025-10-12 06:28:05,301 | INFO     | intersect: -28537714445.89552
[2025-10-12 09:35:45] 2025-10-12 06:28:05,302 | INFO     | chi2: 1.3281669148823354
[2025-10-12 09:35:45] 2025-10-12 06:28:05,302 | INFO     | current chi2=1.3281669148823354 (change=-0.09061774004363829 %)
[2025-10-12 09:35:45] 2025-10-12 06:28:05,302 | INFO     | right removable region: 153
[2025-10-12 09:35:45] 2025-10-12 06:28:05,302 | INFO     | sum of square deviations: 1132458442.5
[2025-10-12 09:35:45] 2025-10-12 06:28:05,303 | INFO     | sum of deviations: -958625247.9999995
[2025-10-12 09:35:45] 2025-10-12 06:28:05,303 | INFO     | mean x: 1760245743.5
[2025-10-12 09:35:45] 2025-10-12 06:28:05,303 | INFO     | mean y: 2331293.038961039
[2025-10-12 09:35:45] 2025-10-12 06:28:05,303 | INFO     | -- intersect: 1492378034.7794473
[2025-10-12 09:35:45] 2025-10-12 06:28:05,304 | INFO     | intersect: 1492378034.7794473
[2025-10-12 09:35:45] 2025-10-12 06:28:05,304 | INFO     | chi2: 0.006301320277865056
[2025-10-12 09:35:45] 2025-10-12 06:28:05,304 | INFO     | current chi2=0.006301320277865056 (change=99.52513269821569 %)
[2025-10-12 09:35:45] 2025-10-12 06:28:05,304 | INFO     | sum of square deviations: 1025693650.0
[2025-10-12 09:35:45] 2025-10-12 06:28:05,305 | INFO     | sum of deviations: -516354629.9999997
[2025-10-12 09:35:45] 2025-10-12 06:28:05,305 | INFO     | mean x: 1760245896.0
[2025-10-12 09:35:45] 2025-10-12 06:28:05,305 | INFO     | mean y: 2330654.5704697985
[2025-10-12 09:35:45] 2025-10-12 06:28:05,305 | INFO     | -- intersect: 888473528.066955
[2025-10-12 09:35:45] 2025-10-12 06:28:05,306 | INFO     | intersect: 888473528.066955
[2025-10-12 09:35:45] 2025-10-12 06:28:05,306 | INFO     | chi2: 0.005958068801767627
[2025-10-12 09:35:45] 2025-10-12 06:28:05,306 | INFO     | current chi2=0.005958068801767627 (change=5.447294550368826 %)
[2025-10-12 09:35:45] 2025-10-12 06:28:05,306 | INFO     | left removable region: 20
[2025-10-12 09:35:45] 2025-10-12 06:28:05,306 | INFO     | sum of square deviations: 729472282.0
[2025-10-12 09:35:45] 2025-10-12 06:28:05,307 | INFO     | sum of deviations: 1554059789.9999998
[2025-10-12 09:35:45] 2025-10-12 06:28:05,307 | INFO     | mean x: 1760246018.0
[2025-10-12 09:35:45] 2025-10-12 06:28:05,307 | INFO     | mean y: 2326720.360902256
[2025-10-12 09:35:45] 2025-10-12 06:28:05,307 | INFO     | -- intersect: -3747682189.616318
[2025-10-12 09:35:45] 2025-10-12 06:28:05,307 | INFO     | intersect: -3747682189.616318
[2025-10-12 09:35:45] 2025-10-12 06:28:05,307 | INFO     | chi2: 0.00025112636541095584
[2025-10-12 09:35:45] 2025-10-12 06:28:05,308 | INFO     | -- intersect: -3747682189.616318
[2025-10-12 09:35:45] 2025-10-12 06:28:05,308 | INFO     | current memory leak: 2.13 B/s (using 133 data points, chi2=0.00)
[2025-10-12 09:35:45] 2025-10-12 06:28:05,308 | INFO     | could have reported an average CPU frequency of 2692 MHz (9 samples)
[2025-10-12 09:35:45] 2025-10-12 06:28:05,308 | INFO     | ..............................
[2025-10-12 09:35:45] 2025-10-12 06:28:05,308 | INFO     | . Timing measurements:
[2025-10-12 09:35:45] 2025-10-12 06:28:05,309 | INFO     | . get job = 0 s
[2025-10-12 09:35:45] 2025-10-12 06:28:05,309 | INFO     | . initial setup = 1 s
[2025-10-12 09:35:45] 2025-10-12 06:28:05,309 | INFO     | . payload setup = 9 s
[2025-10-12 09:35:45] 2025-10-12 06:28:05,309 | INFO     | . stage-in = 0 s
[2025-10-12 09:35:45] 2025-10-12 06:28:05,309 | INFO     | . payload execution = 9704 s
[2025-10-12 09:35:45] 2025-10-12 06:28:05,309 | INFO     | . stage-out = 0 s
[2025-10-12 09:35:45] 2025-10-12 06:28:05,309 | INFO     | . log creation = 0 s
[2025-10-12 09:35:45] 2025-10-12 06:28:05,309 | INFO     | ..............................
[2025-10-12 09:35:45] 2025-10-12 06:28:05,408 | INFO     | 
[2025-10-12 09:35:45] 2025-10-12 06:28:05,408 | INFO     | job summary report
[2025-10-12 09:35:45] 2025-10-12 06:28:05,408 | INFO     | --------------------------------------------------
[2025-10-12 09:35:45] 2025-10-12 06:28:05,408 | INFO     | PanDA job id: 6835984564
[2025-10-12 09:35:45] 2025-10-12 06:28:05,408 | INFO     | task id: 46676269
[2025-10-12 09:35:45] 2025-10-12 06:28:05,409 | INFO     | errors: (none)
[2025-10-12 09:35:45] 2025-10-12 06:28:05,409 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 09:35:45] 2025-10-12 06:28:05,409 | INFO     | pilot state: finished 
[2025-10-12 09:35:45] 2025-10-12 06:28:05,409 | INFO     | transexitcode: 0
[2025-10-12 09:35:45] 2025-10-12 06:28:05,409 | INFO     | exeerrorcode: 0
[2025-10-12 09:35:45] 2025-10-12 06:28:05,409 | INFO     | exeerrordiag: 
[2025-10-12 09:35:45] 2025-10-12 06:28:05,409 | INFO     | exitcode: 0
[2025-10-12 09:35:45] 2025-10-12 06:28:05,409 | INFO     | exitmsg: OK
[2025-10-12 09:35:45] 2025-10-12 06:28:05,409 | INFO     | cpuconsumptiontime: 36985 s
[2025-10-12 09:35:45] 2025-10-12 06:28:05,409 | INFO     | nevents: 400
[2025-10-12 09:35:45] 2025-10-12 06:28:05,409 | INFO     | neventsw: 0
[2025-10-12 09:35:45] 2025-10-12 06:28:05,410 | INFO     | pid: 3473998
[2025-10-12 09:35:45] 2025-10-12 06:28:05,410 | INFO     | pgrp: 3473998
[2025-10-12 09:35:45] 2025-10-12 06:28:05,410 | INFO     | corecount: 4
[2025-10-12 09:35:45] 2025-10-12 06:28:05,410 | INFO     | event service: False
[2025-10-12 09:35:45] 2025-10-12 06:28:05,410 | INFO     | sizes: {0: 2348864, 7: 2349126, 11: 2349154, 9717: 2378147, 9718: 2387169, 9721: 2387225, 9730: 2387611}
[2025-10-12 09:35:45] 2025-10-12 06:28:05,410 | INFO     | --------------------------------------------------
[2025-10-12 09:35:45] 2025-10-12 06:28:05,410 | INFO     | 
[2025-10-12 09:35:45] 2025-10-12 06:28:05,410 | INFO     | executing command: ls -lF /scratch/boinc/var/slot112/slots/0
[2025-10-12 09:35:45] 2025-10-12 06:28:05,440 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 09:35:45] 2025-10-12 06:28:05,440 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 09:35:45] 2025-10-12 06:28:05,441 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 09:35:45] 2025-10-12 06:28:05,441 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 09:35:45] 2025-10-12 06:28:05,441 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 09:35:45] 2025-10-12 06:28:05,441 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 09:35:45] 2025-10-12 06:28:05,441 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 09:35:45] 2025-10-12 06:28:05,441 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 09:35:45] 2025-10-12 06:28:05,441 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 09:35:45] 2025-10-12 06:28:05,441 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 09:35:45] 2025-10-12 06:28:05,441 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 09:35:45] 2025-10-12 06:28:05,442 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 09:35:45] 2025-10-12 06:28:05,442 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 09:35:45] 2025-10-12 06:28:05,442 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 09:35:45] 2025-10-12 06:28:05,442 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 09:35:45] 2025-10-12 06:28:05,442 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 09:35:45] 2025-10-12 06:28:05,442 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 09:35:45] 2025-10-12 06:28:05,442 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 09:35:45] 2025-10-12 06:28:05,442 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 09:35:45] 2025-10-12 06:28:05,442 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 09:35:45] 2025-10-12 06:28:05,443 | INFO     | job 6835984564 has completed (purged errors)
[2025-10-12 09:35:45] 2025-10-12 06:28:05,443 | INFO     | overall cleanup function is called
[2025-10-12 09:35:45] 2025-10-12 06:28:06,005 | INFO     | PID=3456245 has CPU usage=17.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-10-12 09:35:45] 2025-10-12 06:28:06,005 | INFO     | .. there are 12 such processes running
[2025-10-12 09:35:45] 2025-10-12 06:28:06,453 | INFO     | --- collectZombieJob: --- 10, [3473998]
[2025-10-12 09:35:45] 2025-10-12 06:28:06,454 | INFO     | zombie collector waiting for pid 3473998
[2025-10-12 09:35:45] 2025-10-12 06:28:06,454 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 09:35:45] 2025-10-12 06:28:06,454 | INFO     | collected zombie processes
[2025-10-12 09:35:45] 2025-10-12 06:28:06,454 | INFO     | will attempt to kill all subprocesses of pid=3473998
[2025-10-12 09:35:45] 2025-10-12 06:28:07,218 | INFO     | process IDs to be killed: [3473998] (in reverse order)
[2025-10-12 09:35:45] 2025-10-12 06:28:07,482 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 09:35:45] 2025-10-12 06:28:07,483 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 09:35:45] 2025-10-12 06:28:07,514 | INFO     | did not find any defunct processes belonging to 3473998
[2025-10-12 09:35:45] 2025-10-12 06:28:07,543 | INFO     | did not find any defunct processes belonging to 3473998
[2025-10-12 09:35:45] 2025-10-12 06:28:07,544 | INFO     | ready for new job
[2025-10-12 09:35:45] 2025-10-12 06:28:07,544 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 09:35:45] 2025-10-12 06:28:07,546 | INFO     | ***************************************
[2025-10-12 09:35:45] 2025-10-12 06:28:07,546 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 09:35:45] 2025-10-12 06:28:07,546 | INFO     | ***************************************
[2025-10-12 09:35:45] 2025-10-12 06:28:07,546 | INFO     | 
[2025-10-12 09:35:45] 2025-10-12 06:28:07,555 | INFO     | architecture information:
[2025-10-12 09:35:45] 2025-10-12 06:28:07,555 | INFO     | executing command: cat /etc/os-release
[2025-10-12 09:35:45] 2025-10-12 06:28:07,579 | INFO     | cat /etc/os-release:
[2025-10-12 09:35:45] NAME="CentOS Linux"
[2025-10-12 09:35:45] VERSION="7 (Core)"
[2025-10-12 09:35:45] ID="centos"
[2025-10-12 09:35:45] ID_LIKE="rhel fedora"
[2025-10-12 09:35:45] VERSION_ID="7"
[2025-10-12 09:35:45] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 09:35:45] ANSI_COLOR="0;31"
[2025-10-12 09:35:45] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 09:35:45] HOME_URL="https://www.centos.org/"
[2025-10-12 09:35:45] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 09:35:45] 
[2025-10-12 09:35:45] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 09:35:45] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 09:35:45] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 09:35:45] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 09:35:45] 
[2025-10-12 09:35:45] 2025-10-12 06:28:07,580 | INFO     | ***************************************
[2025-10-12 09:35:45] 2025-10-12 06:28:08,082 | INFO     | executing command: df -mP /scratch/boinc/var/slot112/slots/0
[2025-10-12 09:35:45] 2025-10-12 06:28:08,113 | INFO     | sufficient remaining disk space (3338470948864 B)
[2025-10-12 09:35:45] 2025-10-12 06:28:08,113 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 09:35:45] 2025-10-12 06:28:08,114 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 09:35:45] 2025-10-12 06:28:08,114 | INFO     | update_server=False
[2025-10-12 09:35:45] 2025-10-12 06:28:08,114 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 09:35:45] 2025-10-12 06:28:08,114 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 09:35:45] 2025-10-12 06:28:08,306 | INFO     | all payload control threads have been joined
[2025-10-12 09:35:45] 2025-10-12 06:28:08,512 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 09:35:45] 2025-10-12 06:28:08,512 | INFO     | aborting loop
[2025-10-12 09:35:45] 2025-10-12 06:28:08,734 | INFO     | all job control threads have been joined
[2025-10-12 09:35:45] 2025-10-12 06:28:08,842 | INFO     | all data control threads have been joined
[2025-10-12 09:35:45] 2025-10-12 06:28:09,119 | INFO     | [job] retrieve thread has finished
[2025-10-12 09:35:45] 2025-10-12 06:28:09,202 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 09:35:45] 2025-10-12 06:28:09,311 | INFO     | [payload] control thread has finished
[2025-10-12 09:35:45] 2025-10-12 06:28:09,368 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 09:35:45] 2025-10-12 06:28:09,518 | INFO     | [job] job monitor thread has finished
[2025-10-12 09:35:45] 2025-10-12 06:28:09,729 | INFO     | [payload] validate_post thread has finished
[2025-10-12 09:35:45] 2025-10-12 06:28:09,739 | INFO     | [job] control thread has finished
[2025-10-12 09:35:45] 2025-10-12 06:28:09,778 | INFO     | [payload] failed_post thread has finished
[2025-10-12 09:35:45] 2025-10-12 06:28:09,847 | INFO     | [data] control thread has finished
[2025-10-12 09:35:45] 2025-10-12 06:28:10,095 | INFO     | [data] copytool_in thread has finished
[2025-10-12 09:35:45] 2025-10-12 06:28:10,149 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 09:35:45] 2025-10-12 06:28:10,210 | INFO     | [job] validate thread has finished
[2025-10-12 09:35:45] 2025-10-12 06:28:10,222 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 09:35:45] 2025-10-12 06:28:10,419 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 09:35:45] 2025-10-12 06:28:10,597 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 09:35:45] 2025-10-12 06:28:11,207 | INFO     | [data] copytool_out thread has finished
[2025-10-12 09:35:45] 2025-10-12 06:28:11,424 | INFO     | [job] queue monitor thread has finished
[2025-10-12 09:35:45] 2025-10-12 06:28:12,120 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 09:35:45] 2025-10-12 06:28:37,076 | INFO     | 9751s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-10-12 09:35:45] 2025-10-12 06:28:39,040 | INFO     | PID=3456245 has CPU usage=5.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-12 09:35:45] 2025-10-12 06:28:39,040 | INFO     | .. there are 12 such processes running
[2025-10-12 09:35:45] 2025-10-12 06:28:39,041 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 09:35:45] 2025-10-12 06:28:39,041 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 09:35:45] 2025-10-12 06:28:39,041 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 09:35:45] 2025-10-12 06:28:52,748 | INFO     | [monitor] cgroup control has ended
[2025-10-12 09:35:45] 2025-10-12 06:28:54,470 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22818149451584)>', '<ExcThread(monitor, started 22817913411328)>']
[2025-10-12 09:35:45] 2025-10-12 06:28:55,118 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 09:35:45] 2025-10-12 06:28:55,118 | INFO     | [monitor] control thread has ended
[2025-10-12 09:35:45] 2025-10-12 06:28:59,473 | INFO     | all workflow threads have been joined
[2025-10-12 09:35:45] 2025-10-12 06:28:59,474 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 09:35:45] 2025-10-12 06:28:59,474 | INFO     | traces error code: 0
[2025-10-12 09:35:45] 2025-10-12 06:28:59,474 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 09:35:45] 2025-10-12 06:28:59,663 [wrapper] ==== pilot stdout END ====
[2025-10-12 09:35:45] 2025-10-12 06:28:59,667 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 09:35:45] 2025-10-12 06:28:59,671 [wrapper] pilotpid: 3456245
[2025-10-12 09:35:45] 2025-10-12 06:28:59,674 [wrapper] Pilot exit status: 0
[2025-10-12 09:35:45] 2025-10-12 06:28:59,688 [wrapper] pandaids: 6835984564
[2025-10-12 09:35:45] 2025-10-12 06:28:59,860 [wrapper] cleanup supervisor_pilot 3894970 3456246
[2025-10-12 09:35:45] 2025-10-12 06:28:59,865 [wrapper] Test setup, not cleaning
[2025-10-12 09:35:45] 2025-10-12 06:28:59,869 [wrapper] apfmon messages muted
[2025-10-12 09:35:45] 2025-10-12 06:28:59,873 [wrapper] ==== wrapper stdout END ====
[2025-10-12 09:35:45] 2025-10-12 06:28:59,877 [wrapper] ==== wrapper stderr END ====
[2025-10-12 09:35:45]  *** Error codes and diagnostics ***
[2025-10-12 09:35:45]     "exeErrorCode": 0,
[2025-10-12 09:35:45]     "exeErrorDiag": "",
[2025-10-12 09:35:45]     "pilotErrorCode": 0,
[2025-10-12 09:35:45]     "pilotErrorDiag": "",
[2025-10-12 09:35:45]  *** Listing of results directory ***
[2025-10-12 09:35:45] total 411032
[2025-10-12 09:35:45] -rw-r--r-- 1 boinc boinc    557409 Oct  8 12:04 pilot3.tar.gz
[2025-10-12 09:35:45] -rw-r--r-- 1 boinc boinc      5112 Oct  8 12:17 queuedata.json
[2025-10-12 09:35:45] -rwx------ 1 boinc boinc     36292 Oct  8 12:17 runpilot2-wrapper.sh
[2025-10-12 09:35:45] -rw-r--r-- 1 boinc boinc       100 Oct 12 05:45 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 09:35:45] -rwxr-xr-x 1 boinc boinc      7986 Oct 12 05:45 run_atlas
[2025-10-12 09:35:45] -rw-r--r-- 1 boinc boinc       105 Oct 12 05:45 job.xml
[2025-10-12 09:35:45] -rw-r--r-- 1 boinc boinc      6689 Oct 12 05:45 init_data.xml
[2025-10-12 09:35:45] -rw-r--r-- 2 boinc boinc 220747415 Oct 12 05:45 EVNT.46676267._000225.pool.root.1
[2025-10-12 09:35:45] -rw-r--r-- 2 boinc boinc     15120 Oct 12 05:45 start_atlas.sh
[2025-10-12 09:35:45] drwxrwx--x 2 boinc boinc      4096 Oct 12 05:45 shared
[2025-10-12 09:35:45] -rw-r--r-- 2 boinc boinc    569679 Oct 12 05:45 input.tar.gz
[2025-10-12 09:35:45] -rw-r--r-- 1 boinc boinc         0 Oct 12 05:45 boinc_lockfile
[2025-10-12 09:35:45] -rw-r--r-- 1 boinc boinc      2548 Oct 12 05:45 pandaJob.out
[2025-10-12 09:35:45] -rw------- 1 boinc boinc    975512 Oct 12 05:45 agis_schedconf.cvmfs.json
[2025-10-12 09:35:45] -rw------- 1 boinc boinc   1560580 Oct 12 05:45 agis_ddmendpoints.agis.ALL.json
[2025-10-12 09:35:45] drwx------ 5 boinc boinc      4096 Oct 12 05:45 pilot3
[2025-10-12 09:35:45] -rw-r--r-- 1 boinc boinc       528 Oct 12 08:27 boinc_task_state.xml
[2025-10-12 09:35:45] -rw------- 1 boinc boinc 192839301 Oct 12 08:27 HITS.46676269._005567.pool.root.1
[2025-10-12 09:35:45] -rw------- 1 boinc boinc      1024 Oct 12 08:27 memory_monitor_summary.json
[2025-10-12 09:35:45] -rw------- 1 boinc boinc    336865 Oct 12 08:27 log.46676269._005567.job.log.tgz.1
[2025-10-12 09:35:45] -rw------- 1 boinc boinc        95 Oct 12 08:28 pilot_heartbeat.json
[2025-10-12 09:35:45] -rw------- 1 boinc boinc      7786 Oct 12 08:28 heartbeat.json
[2025-10-12 09:35:45] -rw------- 1 boinc boinc      4951 Oct 12 08:28 pilotlog.txt
[2025-10-12 09:35:45] -rw------- 1 boinc boinc   1364628 Oct 12 08:28 log.46676269._005567.job.log.1
[2025-10-12 09:35:45] -rw------- 1 boinc boinc       357 Oct 12 08:28 output.list
[2025-10-12 09:35:45] -rw-r--r-- 1 boinc boinc       620 Oct 12 08:28 runtime_log
[2025-10-12 09:35:45] -rw------- 1 boinc boinc   1720320 Oct 12 08:28 result.tar.gz
[2025-10-12 09:35:45] -rw------- 1 boinc boinc       663 Oct 12 08:28 Gg8KDmsPgQ8n9Rq4apOajLDm4fhM0noT9bVof3QYDmlZMMDmVVmLYo.diag
[2025-10-12 09:35:45] -rw-r--r-- 1 boinc boinc      9084 Oct 12 08:28 runtime_log.err
[2025-10-12 09:35:45] -rw-r--r-- 1 boinc boinc        25 Oct 12 09:35 wrapper_checkpoint.txt
[2025-10-12 09:35:45] -rw-r--r-- 1 boinc boinc      8192 Oct 12 09:35 boinc_mmap_file
[2025-10-12 09:35:45] -rw-r--r-- 1 boinc boinc     21006 Oct 12 09:35 stderr.txt
[2025-10-12 09:35:45] HITS file was successfully produced:
[2025-10-12 09:35:45] -rw------- 1 boinc boinc 192839301 Oct 12 08:27 shared/HITS.pool.root.1
[2025-10-12 09:35:45]  *** Contents of shared directory: ***
[2025-10-12 09:35:45] total 406160
[2025-10-12 09:35:45] -rw-r--r-- 2 boinc boinc 220747415 Oct 12 05:45 ATLAS.root_0
[2025-10-12 09:35:45] -rw-r--r-- 2 boinc boinc     15120 Oct 12 05:45 start_atlas.sh
[2025-10-12 09:35:45] -rw-r--r-- 2 boinc boinc    569679 Oct 12 05:45 input.tar.gz
[2025-10-12 09:35:45] -rw------- 1 boinc boinc 192839301 Oct 12 08:27 HITS.pool.root.1
[2025-10-12 09:35:45] -rw------- 1 boinc boinc   1720320 Oct 12 08:28 result.tar.gz
09:35:46 (3447594): run_atlas exited; CPU time 37658.827068
09:35:46 (3447594): called boinc_finish(0)

</stderr_txt>
]]>

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