Stderr output

<core_client_version>8.3.0</core_client_version>
<![CDATA[
<stderr_txt>
15:27:11 (5548): wrapper (7.7.26015): starting
15:27:11 (5548): wrapper: running run_atlas (--nthreads 8)
[2025-10-08 15:27:11] Arguments: --nthreads 8
[2025-10-08 15:27:11] Threads: 8
[2025-10-08 15:27:11] Checking for CVMFS
[2025-10-08 15:27:11] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-08 15:27:11] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-08 15:27:11] Running cvmfs_config stat atlas.cern.ch
[2025-10-08 15:27:11] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-08 15:27:11] 2.11.0.0 4659 52236 90916 151473 0 186 2175374 4096000 1038 130560 2 13360871 99.889 2965170 320 http://cvmfs-stratum-one.cern.ch/cvmfs/atlas.cern.ch http://141.99.253.245:3128 1
[2025-10-08 15:27:11] CVMFS is ok
[2025-10-08 15:27:11] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-08 15:27:11] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-08 15:27:11] Further information can be found at the LHC@home message board.
[2025-10-08 15:27:11] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-08 15:27:11] Checking for apptainer binary...
[2025-10-08 15:27:11] /usr/bin/which: no apptainer in (/opt/ohpc/pub/libs/singularity/3.7.1/bin:/cm/shared/apps/slurm/current/sbin:/cm/shared/apps/slurm/current/bin:/home/mf493845/.local/bin:/home/mf493845/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin)
[2025-10-08 15:27:11] apptainer is not installed, using version from CVMFS
[2025-10-08 15:27:11] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-08 15:27:11] WARNING: Environment variable TMPDIR already has value [/tmp/job_10352967/atlas/pilot/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment hpc-node006
[2025-10-08 15:27:11] apptainer works
[2025-10-08 15:27:11] Set ATHENA_PROC_NUMBER=8
[2025-10-08 15:27:11] Set ATHENA_CORE_NUMBER=8
[2025-10-08 15:27:11] Starting ATLAS job with PandaID=6835975796
[2025-10-08 15:27:11] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/tmp/job_10352967/atlas/pilot/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-08 16:17:27]  *** The last 200 lines of the pilot log: ***
[2025-10-08 16:17:27]  scope=mc23_13p6TeV
[2025-10-08 16:17:27]  status=None
[2025-10-08 16:17:27]  status_code=0
[2025-10-08 16:17:27]  storage_token=
[2025-10-08 16:17:27]  surl=/tmp/job_10352967/atlas/pilot/slots/0/PanDA_Pilot-6835975796/log.46676269._003118.job.log.tgz.1
[2025-10-08 16:17:27]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/f5/12/log.46676269._003118.job.log.tgz.1
[2025-10-08 16:17:27]  workdir=None
[2025-10-08 16:17:27] ]
[2025-10-08 16:17:27] 2025-10-08 14:17:08,986 | INFO     | transferring file log.46676269._003118.job.log.tgz.1 from /tmp/job_10352967/atlas/pilot/slots/0/PanDA_Pilot-6835975796/log.46676269._003118.job.log.tgz.1 to /tmp/j
[2025-10-08 16:17:27] 2025-10-08 14:17:08,986 | INFO     | executing command: /usr/bin/env mv /tmp/job_10352967/atlas/pilot/slots/0/PanDA_Pilot-6835975796/log.46676269._003118.job.log.tgz.1 /tmp/job_10352967/atlas/pilot/sl
[2025-10-08 16:17:27] 2025-10-08 14:17:08,994 | INFO     | adding to output.list: log.46676269._003118.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/f5/12/log.46676269._003118.job.log.tg
[2025-10-08 16:17:27] 2025-10-08 14:17:08,994 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-08 16:17:27] 2025-10-08 14:17:08,994 | INFO     | summary of transferred files:
[2025-10-08 16:17:27] 2025-10-08 14:17:08,994 | INFO     |  -- lfn=log.46676269._003118.job.log.tgz.1, status_code=0, status=transferred
[2025-10-08 16:17:27] 2025-10-08 14:17:08,994 | INFO     | stage-out finished correctly
[2025-10-08 16:17:27] 2025-10-08 14:17:09,660 | INFO     | time since job start (2993s) is within the limit (172800.0s)
[2025-10-08 16:17:27] 2025-10-08 14:17:10,163 | INFO     | monitor loop #226: job 0:6835975796 is in state 'finished'
[2025-10-08 16:17:27] 2025-10-08 14:17:10,163 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-08 16:17:27] 2025-10-08 14:17:11,275 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-08 16:17:27] 2025-10-08 14:17:11,665 | INFO     | time since job start (2995s) is within the limit (172800.0s)
[2025-10-08 16:17:27] 2025-10-08 14:17:12,665 | INFO     | monitor loop #227: job 0:6835975796 is in state 'finished'
[2025-10-08 16:17:27] 2025-10-08 14:17:12,666 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-08 16:17:27] 2025-10-08 14:17:13,670 | INFO     | time since job start (2997s) is within the limit (172800.0s)
[2025-10-08 16:17:27] 2025-10-08 14:17:13,708 | INFO     | job 6835975796 has state=finished
[2025-10-08 16:17:27] 2025-10-08 14:17:13,709 | INFO     | preparing for final server update for job 6835975796 in state='finished'
[2025-10-08 16:17:27] 2025-10-08 14:17:13,709 | INFO     | this job has now completed (state=finished)
[2025-10-08 16:17:27] 2025-10-08 14:17:13,709 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-08 16:17:27] 2025-10-08 14:17:13,709 | INFO     | log transfer has been attempted: DONE
[2025-10-08 16:17:27] 2025-10-08 14:17:13,709 | INFO     | job 6835975796 has finished - writing final server update
[2025-10-08 16:17:27] 2025-10-08 14:17:13,709 | INFO     | total number of processed events: 400 (read)
[2025-10-08 16:17:27] 2025-10-08 14:17:13,709 | INFO     | executing command: lscpu
[2025-10-08 16:17:27] 2025-10-08 14:17:13,740 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-08 16:17:27] 2025-10-08 14:17:15,168 | INFO     | monitor loop #228: job 0:6835975796 is in state 'finished'
[2025-10-08 16:17:27] 2025-10-08 14:17:15,168 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-08 16:17:27] 2025-10-08 14:17:15,497 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-08 16:17:27] 2025-10-08 14:17:15,501 | INFO     | found 64 cores (32 cores per socket, 2 sockets) , CPU MHz: 2605.0000625000002
[2025-10-08 16:17:27] 2025-10-08 14:17:15,507 | INFO     | using path: /tmp/job_10352967/atlas/pilot/slots/0/PanDA_Pilot-6835975796/memory_monitor_summary.json (trf name=prmon)
[2025-10-08 16:17:27] 2025-10-08 14:17:15,507 | INFO     | extracted standard info from prmon json
[2025-10-08 16:17:27] 2025-10-08 14:17:15,507 | INFO     | extracted standard memory fields from prmon json
[2025-10-08 16:17:27] 2025-10-08 14:17:15,507 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-08 16:17:27] 2025-10-08 14:17:15,507 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-08 16:17:27] 2025-10-08 14:17:15,507 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-08 16:17:27] 2025-10-08 14:17:15,508 | INFO     | fitting pss+swap vs Time
[2025-10-08 16:17:27] 2025-10-08 14:17:15,508 | INFO     | sum of square deviations: 22960430.5
[2025-10-08 16:17:27] 2025-10-08 14:17:15,508 | INFO     | sum of deviations: -96610915.50000001
[2025-10-08 16:17:27] 2025-10-08 14:17:15,508 | INFO     | mean x: 1759931609.5
[2025-10-08 16:17:27] 2025-10-08 14:17:15,508 | INFO     | mean y: 2541638.119047619
[2025-10-08 16:17:27] 2025-10-08 14:17:15,508 | INFO     | -- intersect: 7407829792.937552
[2025-10-08 16:17:27] 2025-10-08 14:17:15,508 | INFO     | intersect: 7407829792.937552
[2025-10-08 16:17:27] 2025-10-08 14:17:15,508 | INFO     | chi2: 0.0028982785313251404
[2025-10-08 16:17:27] 2025-10-08 14:17:15,508 | INFO     | -- intersect: 7407829792.937552
[2025-10-08 16:17:27] 2025-10-08 14:17:15,509 | INFO     | current memory leak: -4.21 B/s (using 42 data points, chi2=0.00)
[2025-10-08 16:17:27] 2025-10-08 14:17:15,509 | INFO     | could have reported an average CPU frequency of 2617 MHz (5 samples)
[2025-10-08 16:17:27] 2025-10-08 14:17:15,509 | INFO     | ..............................
[2025-10-08 16:17:27] 2025-10-08 14:17:15,509 | INFO     | . Timing measurements:
[2025-10-08 16:17:27] 2025-10-08 14:17:15,509 | INFO     | . get job = 0 s
[2025-10-08 16:17:27] 2025-10-08 14:17:15,509 | INFO     | . initial setup = 1 s
[2025-10-08 16:17:27] 2025-10-08 14:17:15,509 | INFO     | . payload setup = 2 s
[2025-10-08 16:17:27] 2025-10-08 14:17:15,509 | INFO     | . stage-in = 0 s
[2025-10-08 16:17:27] 2025-10-08 14:17:15,509 | INFO     | . payload execution = 2972 s
[2025-10-08 16:17:27] 2025-10-08 14:17:15,509 | INFO     | . stage-out = 0 s
[2025-10-08 16:17:27] 2025-10-08 14:17:15,509 | INFO     | . log creation = 0 s
[2025-10-08 16:17:27] 2025-10-08 14:17:15,509 | INFO     | ..............................
[2025-10-08 16:17:27] 2025-10-08 14:17:15,675 | INFO     | time since job start (2999s) is within the limit (172800.0s)
[2025-10-08 16:17:27] 2025-10-08 14:17:15,703 | INFO     | 
[2025-10-08 16:17:27] 2025-10-08 14:17:15,703 | INFO     | job summary report
[2025-10-08 16:17:27] 2025-10-08 14:17:15,703 | INFO     | --------------------------------------------------
[2025-10-08 16:17:27] 2025-10-08 14:17:15,703 | INFO     | PanDA job id: 6835975796
[2025-10-08 16:17:27] 2025-10-08 14:17:15,703 | INFO     | task id: 46676269
[2025-10-08 16:17:27] 2025-10-08 14:17:15,704 | INFO     | errors: (none)
[2025-10-08 16:17:27] 2025-10-08 14:17:15,704 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-08 16:17:27] 2025-10-08 14:17:15,704 | INFO     | pilot state: finished 
[2025-10-08 16:17:27] 2025-10-08 14:17:15,704 | INFO     | transexitcode: 0
[2025-10-08 16:17:27] 2025-10-08 14:17:15,704 | INFO     | exeerrorcode: 0
[2025-10-08 16:17:27] 2025-10-08 14:17:15,704 | INFO     | exeerrordiag: 
[2025-10-08 16:17:27] 2025-10-08 14:17:15,704 | INFO     | exitcode: 0
[2025-10-08 16:17:27] 2025-10-08 14:17:15,704 | INFO     | exitmsg: OK
[2025-10-08 16:17:27] 2025-10-08 14:17:15,704 | INFO     | cpuconsumptiontime: 20814 s
[2025-10-08 16:17:27] 2025-10-08 14:17:15,704 | INFO     | nevents: 400
[2025-10-08 16:17:27] 2025-10-08 14:17:15,704 | INFO     | neventsw: 0
[2025-10-08 16:17:27] 2025-10-08 14:17:15,704 | INFO     | pid: 24414
[2025-10-08 16:17:27] 2025-10-08 14:17:15,704 | INFO     | pgrp: 24414
[2025-10-08 16:17:27] 2025-10-08 14:17:15,704 | INFO     | corecount: 8
[2025-10-08 16:17:27] 2025-10-08 14:17:15,704 | INFO     | event service: False
[2025-10-08 16:17:27] 2025-10-08 14:17:15,704 | INFO     | sizes: {0: 2348978, 2: 2349240, 11: 2349268, 2978: 2374758, 2980: 2383786, 2982: 2383842, 2986: 2384196}
[2025-10-08 16:17:27] 2025-10-08 14:17:15,704 | INFO     | --------------------------------------------------
[2025-10-08 16:17:27] 2025-10-08 14:17:15,704 | INFO     | 
[2025-10-08 16:17:27] 2025-10-08 14:17:15,704 | INFO     | executing command: ls -lF /tmp/job_10352967/atlas/pilot/slots/0
[2025-10-08 16:17:27] 2025-10-08 14:17:15,713 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-08 16:17:27] 2025-10-08 14:17:15,713 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-08 16:17:27] 2025-10-08 14:17:15,713 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-08 16:17:27] 2025-10-08 14:17:15,713 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-08 16:17:27] 2025-10-08 14:17:15,713 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-08 16:17:27] 2025-10-08 14:17:15,713 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-08 16:17:27] 2025-10-08 14:17:15,714 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-08 16:17:27] 2025-10-08 14:17:15,714 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-08 16:17:27] 2025-10-08 14:17:15,714 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-08 16:17:27] 2025-10-08 14:17:15,714 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-08 16:17:27] 2025-10-08 14:17:15,714 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-08 16:17:27] 2025-10-08 14:17:15,714 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-08 16:17:27] 2025-10-08 14:17:15,714 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-08 16:17:27] 2025-10-08 14:17:15,714 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-08 16:17:27] 2025-10-08 14:17:15,714 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-08 16:17:27] 2025-10-08 14:17:15,714 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-08 16:17:27] 2025-10-08 14:17:15,714 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-08 16:17:27] 2025-10-08 14:17:15,714 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-08 16:17:27] 2025-10-08 14:17:15,714 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-08 16:17:27] 2025-10-08 14:17:15,714 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-08 16:17:27] 2025-10-08 14:17:15,714 | INFO     | job 6835975796 has completed (purged errors)
[2025-10-08 16:17:27] 2025-10-08 14:17:15,714 | INFO     | overall cleanup function is called
[2025-10-08 16:17:27] 2025-10-08 14:17:16,720 | INFO     | --- collectZombieJob: --- 10, [24414]
[2025-10-08 16:17:27] 2025-10-08 14:17:16,720 | INFO     | zombie collector waiting for pid 24414
[2025-10-08 16:17:27] 2025-10-08 14:17:16,720 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-08 16:17:27] 2025-10-08 14:17:16,720 | INFO     | collected zombie processes
[2025-10-08 16:17:27] 2025-10-08 14:17:16,720 | INFO     | will attempt to kill all subprocesses of pid=24414
[2025-10-08 16:17:27] 2025-10-08 14:17:16,822 | INFO     | process IDs to be killed: [24414] (in reverse order)
[2025-10-08 16:17:27] 2025-10-08 14:17:16,857 | WARNING  | found no corresponding commands to process id(s)
[2025-10-08 16:17:27] 2025-10-08 14:17:16,857 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-08 16:17:27] 2025-10-08 14:17:16,860 | INFO     | did not find any defunct processes belonging to 24414
[2025-10-08 16:17:27] 2025-10-08 14:17:16,864 | INFO     | did not find any defunct processes belonging to 24414
[2025-10-08 16:17:27] 2025-10-08 14:17:16,864 | INFO     | ready for new job
[2025-10-08 16:17:27] 2025-10-08 14:17:16,864 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-08 16:17:27] 2025-10-08 14:17:16,864 | INFO     | ***************************************
[2025-10-08 16:17:27] 2025-10-08 14:17:16,864 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-08 16:17:27] 2025-10-08 14:17:16,864 | INFO     | ***************************************
[2025-10-08 16:17:27] 2025-10-08 14:17:16,864 | INFO     | 
[2025-10-08 16:17:27] 2025-10-08 14:17:16,878 | INFO     | architecture information:
[2025-10-08 16:17:27] 2025-10-08 14:17:16,878 | INFO     | executing command: cat /etc/os-release
[2025-10-08 16:17:27] 2025-10-08 14:17:16,885 | INFO     | cat /etc/os-release:
[2025-10-08 16:17:27] NAME="CentOS Linux"
[2025-10-08 16:17:27] VERSION="7 (Core)"
[2025-10-08 16:17:27] ID="centos"
[2025-10-08 16:17:27] ID_LIKE="rhel fedora"
[2025-10-08 16:17:27] VERSION_ID="7"
[2025-10-08 16:17:27] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-08 16:17:27] ANSI_COLOR="0;31"
[2025-10-08 16:17:27] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-08 16:17:27] HOME_URL="https://www.centos.org/"
[2025-10-08 16:17:27] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-08 16:17:27] 
[2025-10-08 16:17:27] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-08 16:17:27] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-08 16:17:27] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-08 16:17:27] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-08 16:17:27] 
[2025-10-08 16:17:27] 2025-10-08 14:17:16,885 | INFO     | ***************************************
[2025-10-08 16:17:27] 2025-10-08 14:17:17,387 | INFO     | executing command: df -mP /tmp/job_10352967/atlas/pilot/slots/0
[2025-10-08 16:17:27] 2025-10-08 14:17:17,393 | INFO     | sufficient remaining disk space (227177136128 B)
[2025-10-08 16:17:27] 2025-10-08 14:17:17,394 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-08 16:17:27] 2025-10-08 14:17:17,394 | INFO     | current server update state: UPDATING_FINAL
[2025-10-08 16:17:27] 2025-10-08 14:17:17,394 | INFO     | update_server=False
[2025-10-08 16:17:27] 2025-10-08 14:17:17,394 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-08 16:17:27] 2025-10-08 14:17:17,394 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-08 16:17:27] 2025-10-08 14:17:17,394 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-10-08 16:17:27] 2025-10-08 14:17:17,394 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-08 16:17:27] 2025-10-08 14:17:17,394 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-08 16:17:27] 2025-10-08 14:17:17,394 | INFO     | found 0 job(s) in 20 queues
[2025-10-08 16:17:27] 2025-10-08 14:17:17,395 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-08 16:17:27] 2025-10-08 14:17:17,395 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-08 16:17:27] 2025-10-08 14:17:17,617 | INFO     | all payload control threads have been joined
[2025-10-08 16:17:27] 2025-10-08 14:17:17,671 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-10-08 16:17:27] 2025-10-08 14:17:17,671 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-10-08 16:17:27] 2025-10-08 14:17:17,671 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-08 16:17:27] 2025-10-08 14:17:17,671 | INFO     | will abort loop
[2025-10-08 16:17:27] 2025-10-08 14:17:18,148 | INFO     | all data control threads have been joined
[2025-10-08 16:17:27] 2025-10-08 14:17:18,399 | INFO     | [job] retrieve thread has finished
[2025-10-08 16:17:27] 2025-10-08 14:17:18,399 | INFO     | [job] queue monitor thread has finished
[2025-10-08 16:17:27] 2025-10-08 14:17:18,405 | INFO     | [job] validate thread has finished
[2025-10-08 16:17:27] 2025-10-08 14:17:18,527 | INFO     | [job] create_data_payload thread has finished
[2025-10-08 16:17:27] 2025-10-08 14:17:18,587 | INFO     | [payload] validate_pre thread has finished
[2025-10-08 16:17:27] 2025-10-08 14:17:18,622 | INFO     | [payload] control thread has finished
[2025-10-08 16:17:27] 2025-10-08 14:17:18,676 | INFO     | [job] job monitor thread has finished
[2025-10-08 16:17:27] 2025-10-08 14:17:18,828 | INFO     | [payload] failed_post thread has finished
[2025-10-08 16:17:27] 2025-10-08 14:17:18,833 | INFO     | [payload] execute_payloads thread has finished
[2025-10-08 16:17:27] 2025-10-08 14:17:18,870 | INFO     | all job control threads have been joined
[2025-10-08 16:17:27] 2025-10-08 14:17:19,035 | INFO     | [data] copytool_in thread has finished
[2025-10-08 16:17:27] 2025-10-08 14:17:19,067 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-08 16:17:27] 2025-10-08 14:17:19,153 | INFO     | [data] control thread has finished
[2025-10-08 16:17:27] 2025-10-08 14:17:19,400 | INFO     | [data] copytool_out thread has finished
[2025-10-08 16:17:27] 2025-10-08 14:17:19,573 | INFO     | [payload] validate_post thread has finished
[2025-10-08 16:17:27] 2025-10-08 14:17:19,876 | INFO     | [job] control thread has finished
[2025-10-08 16:17:27] 2025-10-08 14:17:20,615 | INFO     | [monitor] cgroup control has ended
[2025-10-08 16:17:27] 2025-10-08 14:17:21,400 | INFO     | [data] queue_monitor thread has finished
[2025-10-08 16:17:27] 2025-10-08 14:17:22,384 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23456247945024)>', '<ExcThread(monitor, started 23456060475136)>']
[2025-10-08 16:17:27] 2025-10-08 14:17:22,420 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-08 16:17:27] 2025-10-08 14:17:22,420 | INFO     | [monitor] control thread has ended
[2025-10-08 16:17:27] 2025-10-08 14:17:27,392 | INFO     | all workflow threads have been joined
[2025-10-08 16:17:27] 2025-10-08 14:17:27,393 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-08 16:17:27] 2025-10-08 14:17:27,393 | INFO     | traces error code: 0
[2025-10-08 16:17:27] 2025-10-08 14:17:27,393 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-08 16:17:27] 2025-10-08 14:17:27,443 [wrapper] ==== pilot stdout END ====
[2025-10-08 16:17:27] 2025-10-08 14:17:27,444 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-08 16:17:27] 2025-10-08 14:17:27,446 [wrapper] pilotpid: 10007
[2025-10-08 16:17:27] 2025-10-08 14:17:27,447 [wrapper] Pilot exit status: 0
[2025-10-08 16:17:27] 2025-10-08 14:17:27,451 [wrapper] pandaids: 6835975796
[2025-10-08 16:17:27] 2025-10-08 14:17:27,474 [wrapper] cleanup supervisor_pilot  2384 10009
[2025-10-08 16:17:27] 2025-10-08 14:17:27,475 [wrapper] Test setup, not cleaning
[2025-10-08 16:17:27] 2025-10-08 14:17:27,476 [wrapper] apfmon messages muted
[2025-10-08 16:17:27] 2025-10-08 14:17:27,477 [wrapper] ==== wrapper stdout END ====
[2025-10-08 16:17:27] 2025-10-08 14:17:27,478 [wrapper] ==== wrapper stderr END ====
[2025-10-08 16:17:27]  *** Error codes and diagnostics ***
[2025-10-08 16:17:27]     "exeErrorCode": 0,
[2025-10-08 16:17:27]     "exeErrorDiag": "",
[2025-10-08 16:17:27]     "pilotErrorCode": 0,
[2025-10-08 16:17:27]     "pilotErrorDiag": "",
[2025-10-08 16:17:27]  *** Listing of results directory ***
[2025-10-08 16:17:27] total 413992
[2025-10-08 16:17:27] -rw------- 1 mf493845 unix-user    557409 Oct  8 11:48 pilot3.tar.gz
[2025-10-08 16:17:27] -rwx------ 1 mf493845 unix-user     36292 Oct  8 11:53 runpilot2-wrapper.sh
[2025-10-08 16:17:27] -rw------- 1 mf493845 unix-user      5112 Oct  8 11:53 queuedata.json
[2025-10-08 16:17:27] -rw------- 1 mf493845 unix-user       100 Oct  8 14:30 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-08 16:17:27] -rwxr-xr-x 1 mf493845 unix-user      7986 Oct  8 14:30 run_atlas
[2025-10-08 16:17:27] -rw------- 1 mf493845 unix-user       105 Oct  8 14:30 job.xml
[2025-10-08 16:17:27] -rw-r--r-- 2 mf493845 unix-user 223837969 Oct  8 15:27 EVNT.46676267._000125.pool.root.1
[2025-10-08 16:17:27] -rw-r--r-- 2 mf493845 unix-user     15120 Oct  8 15:27 start_atlas.sh
[2025-10-08 16:17:27] drwxrwx--x 2 mf493845 unix-user       100 Oct  8 15:27 shared
[2025-10-08 16:17:27] -rw-r--r-- 2 mf493845 unix-user    569684 Oct  8 15:27 input.tar.gz
[2025-10-08 16:17:27] -rw------- 1 mf493845 unix-user      6390 Oct  8 15:27 init_data.xml
[2025-10-08 16:17:27] -rw------- 1 mf493845 unix-user         0 Oct  8 15:27 boinc_setup_complete
[2025-10-08 16:17:27] -rw------- 1 mf493845 unix-user      8192 Oct  8 15:27 boinc_mmap_file
[2025-10-08 16:17:27] -rw------- 1 mf493845 unix-user         0 Oct  8 15:27 boinc_lockfile
[2025-10-08 16:17:27] -rw------- 1 mf493845 unix-user      2548 Oct  8 15:27 pandaJob.out
[2025-10-08 16:17:27] -rw------- 1 mf493845 unix-user    979369 Oct  8 15:27 agis_schedconf.cvmfs.json
[2025-10-08 16:17:27] -rw------- 1 mf493845 unix-user   1560401 Oct  8 15:27 agis_ddmendpoints.agis.ALL.json
[2025-10-08 16:17:27] drwx------ 5 mf493845 unix-user       440 Oct  8 15:27 pilot3
[2025-10-08 16:17:27] -rw------- 1 mf493845 unix-user 194657406 Oct  8 16:16 HITS.46676269._003118.pool.root.1
[2025-10-08 16:17:27] -rw------- 1 mf493845 unix-user        95 Oct  8 16:16 pilot_heartbeat.json
[2025-10-08 16:17:27] -rw------- 1 mf493845 unix-user      1016 Oct  8 16:17 memory_monitor_summary.json
[2025-10-08 16:17:27] -rw------- 1 mf493845 unix-user    302129 Oct  8 16:17 log.46676269._003118.job.log.tgz.1
[2025-10-08 16:17:27] -rw------- 1 mf493845 unix-user      7764 Oct  8 16:17 heartbeat.json
[2025-10-08 16:17:27] -rw------- 1 mf493845 unix-user      4752 Oct  8 16:17 pilotlog.txt
[2025-10-08 16:17:27] -rw------- 1 mf493845 unix-user    477207 Oct  8 16:17 log.46676269._003118.job.log.1
[2025-10-08 16:17:27] -rw------- 1 mf493845 unix-user       357 Oct  8 16:17 output.list
[2025-10-08 16:17:27] -rw------- 1 mf493845 unix-user       620 Oct  8 16:17 runtime_log
[2025-10-08 16:17:27] -rw------- 1 mf493845 unix-user    798720 Oct  8 16:17 result.tar.gz
[2025-10-08 16:17:27] -rw------- 1 mf493845 unix-user      9076 Oct  8 16:17 runtime_log.err
[2025-10-08 16:17:27] -rw------- 1 mf493845 unix-user       642 Oct  8 16:17 pBGKDm21fQ8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmXjXNDmENdx7n.diag
[2025-10-08 16:17:27] -rw------- 1 mf493845 unix-user     22340 Oct  8 16:17 stderr.txt
[2025-10-08 16:17:27] HITS file was successfully produced:
[2025-10-08 16:17:27] -rw------- 1 mf493845 unix-user 194657406 Oct  8 16:16 shared/HITS.pool.root.1
[2025-10-08 16:17:27]  *** Contents of shared directory: ***
[2025-10-08 16:17:27] total 410044
[2025-10-08 16:17:27] -rw-r--r-- 2 mf493845 unix-user 223837969 Oct  8 15:27 ATLAS.root_0
[2025-10-08 16:17:27] -rw-r--r-- 2 mf493845 unix-user     15120 Oct  8 15:27 start_atlas.sh
[2025-10-08 16:17:27] -rw-r--r-- 2 mf493845 unix-user    569684 Oct  8 15:27 input.tar.gz
[2025-10-08 16:17:27] -rw------- 1 mf493845 unix-user 194657406 Oct  8 16:16 HITS.pool.root.1
[2025-10-08 16:17:27] -rw------- 1 mf493845 unix-user    798720 Oct  8 16:17 result.tar.gz
16:17:28 (5548): run_atlas exited; CPU time 20858.717080
16:17:28 (5548): called boinc_finish(0)

</stderr_txt>
]]>

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