Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
07:40:52 (1988879): wrapper (7.7.26015): starting
07:40:52 (1988879): wrapper: running run_atlas (--nthreads 8)
[2025-10-08 07:40:52] Arguments: --nthreads 8
[2025-10-08 07:40:52] Threads: 8
[2025-10-08 07:40:52] Checking for CVMFS
[2025-10-08 07:40:53] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-08 07:40:53] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-08 07:40:53] Running cvmfs_config stat atlas.cern.ch
[2025-10-08 07:40:54] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-08 07:40:54] 2.13.2.0 7513 71774 144512 151471 0 496 38395896 40960001 27736 16776704 0 426132144 99.748 276897693 46770 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-08 07:40:54] CVMFS is ok
[2025-10-08 07:40:54] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-08 07:40:54] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-08 07:40:54] Further information can be found at the LHC@home message board.
[2025-10-08 07:40:54] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-08 07:40:54] Checking for apptainer binary...
[2025-10-08 07:40:54] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-08 07:40:54] Running /usr/bin/apptainer --version
[2025-10-08 07:40:54] apptainer version 1.4.3-1.el9
[2025-10-08 07:40:54] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-08 07:40:55] c-208-40.aglt2.org
[2025-10-08 07:40:55] apptainer works
[2025-10-08 07:40:55] Set ATHENA_PROC_NUMBER=8
[2025-10-08 07:40:55] Set ATHENA_CORE_NUMBER=8
[2025-10-08 07:40:55] Starting ATLAS job with PandaID=6835975240
[2025-10-08 07:40:55] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-08 09:15:27]  *** The last 200 lines of the pilot log: ***
[2025-10-08 09:15:27]  protocol_id=None
[2025-10-08 09:15:27]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-10-08 09:15:27]  replicas=None
[2025-10-08 09:15:27]  scope=mc23_13p6TeV
[2025-10-08 09:15:27]  status=None
[2025-10-08 09:15:27]  status_code=0
[2025-10-08 09:15:27]  storage_token=
[2025-10-08 09:15:27]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6835975240/log.46676269._002871.job.log.tgz.1
[2025-10-08 09:15:27]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/c9/0e/log.46676269._002871.job.log.tgz.1
[2025-10-08 09:15:27]  workdir=None
[2025-10-08 09:15:27] ]
[2025-10-08 09:15:27] 2025-10-08 13:14:24,185 | INFO     | transferring file log.46676269._002871.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6835975240/log.46676269._002871.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-10-08 09:15:27] 2025-10-08 13:14:24,185 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6835975240/log.46676269._002871.job.log.tgz.1 /tmp/boinchome/slots/0/log.46676269._002871.job
[2025-10-08 09:15:27] 2025-10-08 13:14:24,200 | INFO     | adding to output.list: log.46676269._002871.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/c9/0e/log.46676269._002871.job.log.tg
[2025-10-08 09:15:27] 2025-10-08 13:14:24,201 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-08 09:15:27] 2025-10-08 13:14:24,201 | INFO     | summary of transferred files:
[2025-10-08 09:15:27] 2025-10-08 13:14:24,201 | INFO     |  -- lfn=log.46676269._002871.job.log.tgz.1, status_code=0, status=transferred
[2025-10-08 09:15:27] 2025-10-08 13:14:24,201 | INFO     | stage-out finished correctly
[2025-10-08 09:15:27] 2025-10-08 13:14:24,705 | INFO     | time since job start (5533s) is within the limit (172800.0s)
[2025-10-08 09:15:27] 2025-10-08 13:14:25,267 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-08 09:15:27] 2025-10-08 13:14:25,345 | INFO     | job 6835975240 has state=finished
[2025-10-08 09:15:27] 2025-10-08 13:14:25,345 | INFO     | preparing for final server update for job 6835975240 in state='finished'
[2025-10-08 09:15:27] 2025-10-08 13:14:25,346 | INFO     | this job has now completed (state=finished)
[2025-10-08 09:15:27] 2025-10-08 13:14:25,346 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-08 09:15:27] 2025-10-08 13:14:25,346 | INFO     | log transfer has been attempted: DONE
[2025-10-08 09:15:27] 2025-10-08 13:14:25,346 | INFO     | job 6835975240 has finished - writing final server update
[2025-10-08 09:15:27] 2025-10-08 13:14:25,346 | INFO     | total number of processed events: 400 (read)
[2025-10-08 09:15:27] 2025-10-08 13:14:25,346 | INFO     | executing command: lscpu
[2025-10-08 09:15:27] 2025-10-08 13:14:25,405 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-08 09:15:27] 2025-10-08 13:14:26,424 | INFO     | monitor loop #380: job 0:6835975240 is in state 'finished'
[2025-10-08 09:15:27] 2025-10-08 13:14:26,424 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-08 09:15:27] 2025-10-08 13:14:26,712 | INFO     | time since job start (5535s) is within the limit (172800.0s)
[2025-10-08 09:15:27] 2025-10-08 13:14:28,718 | INFO     | time since job start (5537s) is within the limit (172800.0s)
[2025-10-08 09:15:27] 2025-10-08 13:14:28,928 | INFO     | monitor loop #381: job 0:6835975240 is in state 'finished'
[2025-10-08 09:15:27] 2025-10-08 13:14:28,928 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-08 09:15:27] 2025-10-08 13:14:29,585 | INFO     | CPU arch script returned: x86-64-v4
[2025-10-08 09:15:27] 2025-10-08 13:14:29,590 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 3799.8511406249995
[2025-10-08 09:15:27] 2025-10-08 13:14:29,602 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6835975240/memory_monitor_summary.json (trf name=prmon)
[2025-10-08 09:15:27] 2025-10-08 13:14:29,602 | INFO     | extracted standard info from prmon json
[2025-10-08 09:15:27] 2025-10-08 13:14:29,602 | INFO     | extracted standard memory fields from prmon json
[2025-10-08 09:15:27] 2025-10-08 13:14:29,603 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-08 09:15:27] 2025-10-08 13:14:29,603 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-08 09:15:27] 2025-10-08 13:14:29,603 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-08 09:15:27] 2025-10-08 13:14:29,605 | INFO     | fitting pss+swap vs Time
[2025-10-08 09:15:27] 2025-10-08 13:14:29,605 | INFO     | sum of square deviations: 170941186.4512196
[2025-10-08 09:15:27] 2025-10-08 13:14:29,605 | INFO     | sum of deviations: 7364163449.634145
[2025-10-08 09:15:27] 2025-10-08 13:14:29,605 | INFO     | mean x: 1759926658.5243902
[2025-10-08 09:15:27] 2025-10-08 13:14:29,605 | INFO     | mean y: 2462297.6829268294
[2025-10-08 09:15:27] 2025-10-08 13:14:29,605 | INFO     | -- intersect: -75815354588.9484
[2025-10-08 09:15:27] 2025-10-08 13:14:29,605 | INFO     | intersect: -75815354588.9484
[2025-10-08 09:15:27] 2025-10-08 13:14:29,605 | INFO     | chi2: 0.41834603350861144
[2025-10-08 09:15:27] 2025-10-08 13:14:29,606 | INFO     | -- intersect: -75815354588.9484
[2025-10-08 09:15:27] 2025-10-08 13:14:29,606 | INFO     | current memory leak: 43.08 B/s (using 82 data points, chi2=0.42)
[2025-10-08 09:15:27] 2025-10-08 13:14:29,606 | INFO     | could have reported an average CPU frequency of 3798 MHz (7 samples)
[2025-10-08 09:15:27] 2025-10-08 13:14:29,606 | INFO     | ..............................
[2025-10-08 09:15:27] 2025-10-08 13:14:29,606 | INFO     | . Timing measurements:
[2025-10-08 09:15:27] 2025-10-08 13:14:29,606 | INFO     | . get job = 0 s
[2025-10-08 09:15:27] 2025-10-08 13:14:29,606 | INFO     | . initial setup = 8 s
[2025-10-08 09:15:27] 2025-10-08 13:14:29,606 | INFO     | . payload setup = 42 s
[2025-10-08 09:15:27] 2025-10-08 13:14:29,606 | INFO     | . stage-in = 0 s
[2025-10-08 09:15:27] 2025-10-08 13:14:29,606 | INFO     | . payload execution = 5409 s
[2025-10-08 09:15:27] 2025-10-08 13:14:29,606 | INFO     | . stage-out = 0 s
[2025-10-08 09:15:27] 2025-10-08 13:14:29,606 | INFO     | . log creation = 0 s
[2025-10-08 09:15:27] 2025-10-08 13:14:29,606 | INFO     | ..............................
[2025-10-08 09:15:27] 2025-10-08 13:14:29,667 | INFO     | 
[2025-10-08 09:15:27] 2025-10-08 13:14:29,668 | INFO     | job summary report
[2025-10-08 09:15:27] 2025-10-08 13:14:29,668 | INFO     | --------------------------------------------------
[2025-10-08 09:15:27] 2025-10-08 13:14:29,668 | INFO     | PanDA job id: 6835975240
[2025-10-08 09:15:27] 2025-10-08 13:14:29,668 | INFO     | task id: 46676269
[2025-10-08 09:15:27] 2025-10-08 13:14:29,668 | INFO     | errors: (none)
[2025-10-08 09:15:27] 2025-10-08 13:14:29,668 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-08 09:15:27] 2025-10-08 13:14:29,668 | INFO     | pilot state: finished 
[2025-10-08 09:15:27] 2025-10-08 13:14:29,668 | INFO     | transexitcode: 0
[2025-10-08 09:15:27] 2025-10-08 13:14:29,668 | INFO     | exeerrorcode: 0
[2025-10-08 09:15:27] 2025-10-08 13:14:29,668 | INFO     | exeerrordiag: 
[2025-10-08 09:15:27] 2025-10-08 13:14:29,668 | INFO     | exitcode: 0
[2025-10-08 09:15:27] 2025-10-08 13:14:29,668 | INFO     | exitmsg: OK
[2025-10-08 09:15:27] 2025-10-08 13:14:29,668 | INFO     | cpuconsumptiontime: 23277 s
[2025-10-08 09:15:27] 2025-10-08 13:14:29,668 | INFO     | nevents: 400
[2025-10-08 09:15:27] 2025-10-08 13:14:29,668 | INFO     | neventsw: 0
[2025-10-08 09:15:27] 2025-10-08 13:14:29,668 | INFO     | pid: 2029987
[2025-10-08 09:15:27] 2025-10-08 13:14:29,668 | INFO     | pgrp: 2029987
[2025-10-08 09:15:27] 2025-10-08 13:14:29,668 | INFO     | corecount: 8
[2025-10-08 09:15:27] 2025-10-08 13:14:29,668 | INFO     | event service: False
[2025-10-08 09:15:27] 2025-10-08 13:14:29,668 | INFO     | sizes: {0: 2348024, 1: 2348880, 2: 2348880, 12: 2348908, 23: 2348936, 34: 2349382, 45: 2349382, 5456: 2384996, 5457: 2384996, 5462: 2385190}
[2025-10-08 09:15:27] 2025-10-08 13:14:29,668 | INFO     | --------------------------------------------------
[2025-10-08 09:15:27] 2025-10-08 13:14:29,669 | INFO     | 
[2025-10-08 09:15:27] 2025-10-08 13:14:29,669 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-10-08 09:15:27] 2025-10-08 13:14:29,697 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-08 09:15:27] 2025-10-08 13:14:29,697 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-08 09:15:27] 2025-10-08 13:14:29,697 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-08 09:15:27] 2025-10-08 13:14:29,697 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-08 09:15:27] 2025-10-08 13:14:29,697 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-08 09:15:27] 2025-10-08 13:14:29,697 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-08 09:15:27] 2025-10-08 13:14:29,697 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-08 09:15:27] 2025-10-08 13:14:29,697 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-08 09:15:27] 2025-10-08 13:14:29,697 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-08 09:15:27] 2025-10-08 13:14:29,697 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-08 09:15:27] 2025-10-08 13:14:29,697 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-08 09:15:27] 2025-10-08 13:14:29,697 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-08 09:15:27] 2025-10-08 13:14:29,697 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-08 09:15:27] 2025-10-08 13:14:29,697 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-08 09:15:27] 2025-10-08 13:14:29,697 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-08 09:15:27] 2025-10-08 13:14:29,697 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-08 09:15:27] 2025-10-08 13:14:29,697 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-08 09:15:27] 2025-10-08 13:14:29,698 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-08 09:15:27] 2025-10-08 13:14:29,698 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-08 09:15:27] 2025-10-08 13:14:29,698 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-08 09:15:27] 2025-10-08 13:14:29,698 | INFO     | job 6835975240 has completed (purged errors)
[2025-10-08 09:15:27] 2025-10-08 13:14:29,698 | INFO     | overall cleanup function is called
[2025-10-08 09:15:27] 2025-10-08 13:14:30,705 | INFO     | --- collectZombieJob: --- 10, [2029987]
[2025-10-08 09:15:27] 2025-10-08 13:14:30,705 | INFO     | zombie collector waiting for pid 2029987
[2025-10-08 09:15:27] 2025-10-08 13:14:30,705 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-08 09:15:27] 2025-10-08 13:14:30,705 | INFO     | collected zombie processes
[2025-10-08 09:15:27] 2025-10-08 13:14:30,705 | INFO     | will attempt to kill all subprocesses of pid=2029987
[2025-10-08 09:15:27] 2025-10-08 13:14:31,052 | INFO     | process IDs to be killed: [2029987] (in reverse order)
[2025-10-08 09:15:27] 2025-10-08 13:14:31,182 | WARNING  | found no corresponding commands to process id(s)
[2025-10-08 09:15:27] 2025-10-08 13:14:31,182 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-08 09:15:27] 2025-10-08 13:14:31,202 | INFO     | did not find any defunct processes belonging to 2029987
[2025-10-08 09:15:27] 2025-10-08 13:14:31,222 | INFO     | did not find any defunct processes belonging to 2029987
[2025-10-08 09:15:27] 2025-10-08 13:14:31,224 | INFO     | ready for new job
[2025-10-08 09:15:27] 2025-10-08 13:14:31,224 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-08 09:15:27] 2025-10-08 13:14:31,226 | INFO     | ***************************************
[2025-10-08 09:15:27] 2025-10-08 13:14:31,226 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-08 09:15:27] 2025-10-08 13:14:31,226 | INFO     | ***************************************
[2025-10-08 09:15:27] 2025-10-08 13:14:31,227 | INFO     | 
[2025-10-08 09:15:27] 2025-10-08 13:14:31,241 | INFO     | architecture information:
[2025-10-08 09:15:27] 2025-10-08 13:14:31,242 | INFO     | executing command: cat /etc/os-release
[2025-10-08 09:15:27] 2025-10-08 13:14:31,258 | INFO     | cat /etc/os-release:
[2025-10-08 09:15:27] NAME="CentOS Linux"
[2025-10-08 09:15:27] VERSION="7 (Core)"
[2025-10-08 09:15:27] ID="centos"
[2025-10-08 09:15:27] ID_LIKE="rhel fedora"
[2025-10-08 09:15:27] VERSION_ID="7"
[2025-10-08 09:15:27] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-08 09:15:27] ANSI_COLOR="0;31"
[2025-10-08 09:15:27] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-08 09:15:27] HOME_URL="https://www.centos.org/"
[2025-10-08 09:15:27] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-08 09:15:27] 
[2025-10-08 09:15:27] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-08 09:15:27] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-08 09:15:27] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-08 09:15:27] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-08 09:15:27] 
[2025-10-08 09:15:27] 2025-10-08 13:14:31,258 | INFO     | ***************************************
[2025-10-08 09:15:27] 2025-10-08 13:14:31,761 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-10-08 09:15:27] 2025-10-08 13:14:31,779 | INFO     | sufficient remaining disk space (173213220864 B)
[2025-10-08 09:15:27] 2025-10-08 13:14:31,779 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-08 09:15:27] 2025-10-08 13:14:31,779 | INFO     | current server update state: UPDATING_FINAL
[2025-10-08 09:15:27] 2025-10-08 13:14:31,779 | INFO     | update_server=False
[2025-10-08 09:15:27] 2025-10-08 13:14:31,779 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-08 09:15:27] 2025-10-08 13:14:31,779 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-08 09:15:27] 2025-10-08 13:14:32,273 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-08 09:15:27] 2025-10-08 13:14:32,427 | INFO     | all data control threads have been joined
[2025-10-08 09:15:27] 2025-10-08 13:14:32,438 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-08 09:15:27] 2025-10-08 13:14:32,438 | INFO     | aborting loop
[2025-10-08 09:15:27] 2025-10-08 13:14:32,671 | INFO     | all payload control threads have been joined
[2025-10-08 09:15:27] 2025-10-08 13:14:32,784 | INFO     | [job] retrieve thread has finished
[2025-10-08 09:15:27] 2025-10-08 13:14:32,790 | INFO     | all job control threads have been joined
[2025-10-08 09:15:27] 2025-10-08 13:14:32,989 | INFO     | [payload] failed_post thread has finished
[2025-10-08 09:15:27] 2025-10-08 13:14:33,433 | INFO     | [data] control thread has finished
[2025-10-08 09:15:27] 2025-10-08 13:14:33,439 | INFO     | [job] job monitor thread has finished
[2025-10-08 09:15:27] 2025-10-08 13:14:33,673 | INFO     | [payload] control thread has finished
[2025-10-08 09:15:27] 2025-10-08 13:14:33,675 | INFO     | [payload] execute_payloads thread has finished
[2025-10-08 09:15:27] 2025-10-08 13:14:33,788 | INFO     | [data] copytool_in thread has finished
[2025-10-08 09:15:27] 2025-10-08 13:14:33,795 | INFO     | [job] control thread has finished
[2025-10-08 09:15:27] 2025-10-08 13:14:33,874 | INFO     | [job] create_data_payload thread has finished
[2025-10-08 09:15:27] 2025-10-08 13:14:33,940 | INFO     | [payload] validate_pre thread has finished
[2025-10-08 09:15:27] 2025-10-08 13:14:34,247 | INFO     | [job] validate thread has finished
[2025-10-08 09:15:27] 2025-10-08 13:14:34,280 | INFO     | [data] copytool_out thread has finished
[2025-10-08 09:15:27] 2025-10-08 13:14:34,338 | INFO     | [payload] validate_post thread has finished
[2025-10-08 09:15:27] 2025-10-08 13:14:34,679 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-08 09:15:27] 2025-10-08 13:14:35,684 | INFO     | [job] queue monitor thread has finished
[2025-10-08 09:15:27] 2025-10-08 13:14:35,786 | INFO     | [data] queue_monitor thread has finished
[2025-10-08 09:15:27] 2025-10-08 13:14:42,822 | INFO     | job.realtimelogging is not enabled
[2025-10-08 09:15:27] 2025-10-08 13:14:43,827 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-08 09:15:27] 2025-10-08 13:15:02,223 | INFO     | PID=2008643 has CPU usage=4.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-08 09:15:27] 2025-10-08 13:15:02,224 | INFO     | .. there are 23 such processes running
[2025-10-08 09:15:27] 2025-10-08 13:15:02,225 | INFO     | found 0 job(s) in 20 queues
[2025-10-08 09:15:27] 2025-10-08 13:15:02,225 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-08 09:15:27] 2025-10-08 13:15:02,225 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-08 09:15:27] 2025-10-08 13:15:19,995 | INFO     | [monitor] cgroup control has ended
[2025-10-08 09:15:27] 2025-10-08 13:15:21,789 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140513457198912)>', '<ExcThread(monitor, started 140512740767488)>']
[2025-10-08 09:15:27] 2025-10-08 13:15:22,338 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-08 09:15:27] 2025-10-08 13:15:22,338 | INFO     | [monitor] control thread has ended
[2025-10-08 09:15:27] 2025-10-08 13:15:26,815 | INFO     | all workflow threads have been joined
[2025-10-08 09:15:27] 2025-10-08 13:15:26,815 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-08 09:15:27] 2025-10-08 13:15:26,815 | INFO     | traces error code: 0
[2025-10-08 09:15:27] 2025-10-08 13:15:26,816 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-08 09:15:27] 2025-10-08 13:15:26,969 [wrapper] ==== pilot stdout END ====
[2025-10-08 09:15:27] 2025-10-08 13:15:26,974 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-08 09:15:27] 2025-10-08 13:15:26,979 [wrapper] pilotpid: 2008643
[2025-10-08 09:15:27] 2025-10-08 13:15:26,983 [wrapper] Pilot exit status: 0
[2025-10-08 09:15:27] 2025-10-08 13:15:26,997 [wrapper] pandaids: 6835975240
[2025-10-08 09:15:27] 2025-10-08 13:15:27,087 [wrapper] cleanup supervisor_pilot 2410118 2008644
[2025-10-08 09:15:27] 2025-10-08 13:15:27,091 [wrapper] Test setup, not cleaning
[2025-10-08 09:15:27] 2025-10-08 13:15:27,094 [wrapper] apfmon messages muted
[2025-10-08 09:15:27] 2025-10-08 13:15:27,097 [wrapper] ==== wrapper stdout END ====
[2025-10-08 09:15:27] 2025-10-08 13:15:27,109 [wrapper] ==== wrapper stderr END ====
[2025-10-08 09:15:27]  *** Error codes and diagnostics ***
[2025-10-08 09:15:27]     "exeErrorCode": 0,
[2025-10-08 09:15:27]     "exeErrorDiag": "",
[2025-10-08 09:15:27]     "pilotErrorCode": 0,
[2025-10-08 09:15:27]     "pilotErrorDiag": "",
[2025-10-08 09:15:27]  *** Listing of results directory ***
[2025-10-08 09:15:27] total 407160
[2025-10-08 09:15:27] -rw-r--r--. 1 boincer umatlas    557409 Oct  8 05:48 pilot3.tar.gz
[2025-10-08 09:15:27] -rwx------. 1 boincer umatlas     36292 Oct  8 05:52 runpilot2-wrapper.sh
[2025-10-08 09:15:27] -rw-r--r--. 1 boincer umatlas      5112 Oct  8 05:53 queuedata.json
[2025-10-08 09:15:27] -rw-r--r--. 1 boincer umatlas       100 Oct  8 07:40 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-08 09:15:27] -rwxr-xr-x. 1 boincer umatlas      7986 Oct  8 07:40 run_atlas
[2025-10-08 09:15:27] -rw-r--r--. 1 boincer umatlas       105 Oct  8 07:40 job.xml
[2025-10-08 09:15:27] -rw-r--r--. 2 boincer umatlas 218251569 Oct  8 07:40 EVNT.46676267._000115.pool.root.1
[2025-10-08 09:15:27] -rw-r--r--. 2 boincer umatlas     15120 Oct  8 07:40 start_atlas.sh
[2025-10-08 09:15:27] drwxrwx--x. 2 boincer umatlas      4096 Oct  8 07:40 shared
[2025-10-08 09:15:27] -rw-r--r--. 2 boincer umatlas    569683 Oct  8 07:40 input.tar.gz
[2025-10-08 09:15:27] -rw-r--r--. 1 boincer umatlas         0 Oct  8 07:40 boinc_lockfile
[2025-10-08 09:15:27] -rw-r--r--. 1 boincer umatlas      2548 Oct  8 07:40 pandaJob.out
[2025-10-08 09:15:27] -rw-------. 1 boincer umatlas    979321 Oct  8 07:42 agis_schedconf.cvmfs.json
[2025-10-08 09:15:27] -rw-------. 1 boincer umatlas   1560401 Oct  8 07:42 agis_ddmendpoints.agis.ALL.json
[2025-10-08 09:15:27] drwx------. 5 boincer umatlas      4096 Oct  8 07:42 pilot3
[2025-10-08 09:15:27] -rw-r--r--. 1 boincer umatlas      7174 Oct  8 09:10 init_data.xml
[2025-10-08 09:15:27] -rw-------. 1 boincer umatlas 192573580 Oct  8 09:13 HITS.46676269._002871.pool.root.1
[2025-10-08 09:15:27] -rw-r--r--. 1 boincer umatlas       529 Oct  8 09:14 boinc_task_state.xml
[2025-10-08 09:15:27] -rw-------. 1 boincer umatlas      1037 Oct  8 09:14 memory_monitor_summary.json
[2025-10-08 09:15:27] -rw-------. 1 boincer umatlas    340398 Oct  8 09:14 log.46676269._002871.job.log.tgz.1
[2025-10-08 09:15:27] -rw-------. 1 boincer umatlas      7782 Oct  8 09:14 heartbeat.json
[2025-10-08 09:15:27] -rw-------. 1 boincer umatlas        95 Oct  8 09:15 pilot_heartbeat.json
[2025-10-08 09:15:27] -rw-r--r--. 1 boincer umatlas      8192 Oct  8 09:15 boinc_mmap_file
[2025-10-08 09:15:27] -rw-r--r--. 1 boincer umatlas        27 Oct  8 09:15 wrapper_checkpoint.txt
[2025-10-08 09:15:27] -rw-------. 1 boincer umatlas      4897 Oct  8 09:15 pilotlog.txt
[2025-10-08 09:15:27] -rw-------. 1 boincer umatlas    756166 Oct  8 09:15 log.46676269._002871.job.log.1
[2025-10-08 09:15:27] -rw-------. 1 boincer umatlas       357 Oct  8 09:15 output.list
[2025-10-08 09:15:27] -rw-r--r--. 1 boincer umatlas       620 Oct  8 09:15 runtime_log
[2025-10-08 09:15:27] -rw-------. 1 boincer umatlas   1116160 Oct  8 09:15 result.tar.gz
[2025-10-08 09:15:27] -rw-------. 1 boincer umatlas       652 Oct  8 09:15 sInMDmt1fQ8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm8iXNDm216JHm.diag
[2025-10-08 09:15:27] -rw-r--r--. 1 boincer umatlas      8703 Oct  8 09:15 runtime_log.err
[2025-10-08 09:15:27] -rw-r--r--. 1 boincer umatlas     21811 Oct  8 09:15 stderr.txt
[2025-10-08 09:15:27] HITS file was successfully produced:
[2025-10-08 09:15:27] -rw-------. 1 boincer umatlas 192573580 Oct  8 09:13 shared/HITS.pool.root.1
[2025-10-08 09:15:27]  *** Contents of shared directory: ***
[2025-10-08 09:15:27] total 402880
[2025-10-08 09:15:27] -rw-r--r--. 2 boincer umatlas 218251569 Oct  8 07:40 ATLAS.root_0
[2025-10-08 09:15:27] -rw-r--r--. 2 boincer umatlas     15120 Oct  8 07:40 start_atlas.sh
[2025-10-08 09:15:27] -rw-r--r--. 2 boincer umatlas    569683 Oct  8 07:40 input.tar.gz
[2025-10-08 09:15:27] -rw-------. 1 boincer umatlas 192573580 Oct  8 09:13 HITS.pool.root.1
[2025-10-08 09:15:27] -rw-------. 1 boincer umatlas   1116160 Oct  8 09:15 result.tar.gz
09:15:28 (1988879): run_atlas exited; CPU time 23390.922263
09:15:28 (1988879): called boinc_finish(0)

</stderr_txt>
]]>

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