Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
00:02:32 (1628796): wrapper (7.7.26015): starting
00:02:32 (1628796): wrapper: running run_atlas (--nthreads 4)
[2025-10-11 00:02:32] Arguments: --nthreads 4
[2025-10-11 00:02:32] Threads: 4
[2025-10-11 00:02:32] Checking for CVMFS
[2025-10-11 00:02:32] No cvmfs_config command found, will try listing directly
[2025-10-11 00:02:32] CVMFS is ok
[2025-10-11 00:02:32] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-11 00:02:32] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-11 00:02:32] Further information can be found at the LHC@home message board.
[2025-10-11 00:02:32] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-11 00:02:32] Checking for apptainer binary...
[2025-10-11 00:02:32] which: no apptainer in ((null))
[2025-10-11 00:02:32] apptainer is not installed, using version from CVMFS
[2025-10-11 00:02:32] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-11 00:02:32] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot44/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut09.grid.cesnet.cz
[2025-10-11 00:02:32] apptainer works
[2025-10-11 00:02:32] Set ATHENA_PROC_NUMBER=4
[2025-10-11 00:02:32] Set ATHENA_CORE_NUMBER=4
[2025-10-11 00:02:32] Starting ATLAS job with PandaID=6835982253
[2025-10-11 00:02:32] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot44/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-11 03:59:22]  *** The last 200 lines of the pilot log: ***
[2025-10-11 03:59:22] 2025-10-11 01:23:28,867 | INFO     | intersect: -3036209396.2359033
[2025-10-11 03:59:22] 2025-10-11 01:23:28,867 | INFO     | chi2: 0.0020010162999765145
[2025-10-11 03:59:22] 2025-10-11 01:23:28,867 | INFO     | current chi2=0.0020010162999765145 (change=79.03006388205566 %)
[2025-10-11 03:59:22] 2025-10-11 01:23:28,867 | INFO     | sum of square deviations: 1869302025.5
[2025-10-11 03:59:22] 2025-10-11 01:23:28,868 | INFO     | sum of deviations: 2545748776.4999995
[2025-10-11 03:59:22] 2025-10-11 01:23:28,869 | INFO     | mean x: 1760140227.5
[2025-10-11 03:59:22] 2025-10-11 01:23:28,869 | INFO     | mean y: 2333647.6208791207
[2025-10-11 03:59:22] 2025-10-11 01:23:28,869 | INFO     | -- intersect: -2394750809.305237
[2025-10-11 03:59:22] 2025-10-11 01:23:28,869 | INFO     | intersect: -2394750809.305237
[2025-10-11 03:59:22] 2025-10-11 01:23:28,869 | INFO     | chi2: 0.0011445642287915845
[2025-10-11 03:59:22] 2025-10-11 01:23:28,869 | INFO     | current chi2=0.0011445642287915845 (change=42.80085430563369 %)
[2025-10-11 03:59:22] 2025-10-11 01:23:28,870 | INFO     | sum of square deviations: 1719429448.0
[2025-10-11 03:59:22] 2025-10-11 01:23:28,871 | INFO     | sum of deviations: 1790240017.0000005
[2025-10-11 03:59:22] 2025-10-11 01:23:28,871 | INFO     | mean x: 1760140380.0
[2025-10-11 03:59:22] 2025-10-11 01:23:28,871 | INFO     | mean y: 2334415.3107344634
[2025-10-11 03:59:22] 2025-10-11 01:23:28,871 | INFO     | -- intersect: -1830293115.571002
[2025-10-11 03:59:22] 2025-10-11 01:23:28,871 | INFO     | intersect: -1830293115.571002
[2025-10-11 03:59:22] 2025-10-11 01:23:28,871 | INFO     | chi2: 0.0007292672530196336
[2025-10-11 03:59:22] 2025-10-11 01:23:28,871 | INFO     | current chi2=0.0007292672530196336 (change=36.28428753276833 %)
[2025-10-11 03:59:22] 2025-10-11 01:23:28,872 | INFO     | sum of square deviations: 1577789583.0
[2025-10-11 03:59:22] 2025-10-11 01:23:28,873 | INFO     | sum of deviations: 1243220565.0
[2025-10-11 03:59:22] 2025-10-11 01:23:28,873 | INFO     | mean x: 1760140532.5
[2025-10-11 03:59:22] 2025-10-11 01:23:28,873 | INFO     | mean y: 2335003.593023256
[2025-10-11 03:59:22] 2025-10-11 01:23:28,873 | INFO     | -- intersect: -1384569138.0437458
[2025-10-11 03:59:22] 2025-10-11 01:23:28,873 | INFO     | intersect: -1384569138.0437458
[2025-10-11 03:59:22] 2025-10-11 01:23:28,873 | INFO     | chi2: 0.0004982924019140346
[2025-10-11 03:59:22] 2025-10-11 01:23:28,873 | INFO     | current chi2=0.0004982924019140346 (change=31.672181926339782 %)
[2025-10-11 03:59:22] 2025-10-11 01:23:28,874 | INFO     | sum of square deviations: 1444149868.0
[2025-10-11 03:59:22] 2025-10-11 01:23:28,875 | INFO     | sum of deviations: 851489301.0
[2025-10-11 03:59:22] 2025-10-11 01:23:28,875 | INFO     | mean x: 1760140685.0
[2025-10-11 03:59:22] 2025-10-11 01:23:28,875 | INFO     | mean y: 2335449.5449101795
[2025-10-11 03:59:22] 2025-10-11 01:23:28,875 | INFO     | -- intersect: -1035466093.5926552
[2025-10-11 03:59:22] 2025-10-11 01:23:28,875 | INFO     | intersect: -1035466093.5926552
[2025-10-11 03:59:22] 2025-10-11 01:23:28,875 | INFO     | chi2: 0.0003694908609783646
[2025-10-11 03:59:22] 2025-10-11 01:23:28,875 | INFO     | current chi2=0.0003694908609783646 (change=25.848586179704753 %)
[2025-10-11 03:59:22] 2025-10-11 01:23:28,876 | INFO     | sum of square deviations: 1318277740.5
[2025-10-11 03:59:22] 2025-10-11 01:23:28,876 | INFO     | sum of deviations: 689876205.9999998
[2025-10-11 03:59:22] 2025-10-11 01:23:28,877 | INFO     | mean x: 1760140837.5
[2025-10-11 03:59:22] 2025-10-11 01:23:28,877 | INFO     | mean y: 2335644.1975308643
[2025-10-11 03:59:22] 2025-10-11 01:23:28,877 | INFO     | -- intersect: -918774714.9439402
[2025-10-11 03:59:22] 2025-10-11 01:23:28,877 | INFO     | intersect: -918774714.9439402
[2025-10-11 03:59:22] 2025-10-11 01:23:28,877 | INFO     | chi2: 0.00034849235473050056
[2025-10-11 03:59:22] 2025-10-11 01:23:28,877 | INFO     | current chi2=0.00034849235473050056 (change=5.6830921858967445 %)
[2025-10-11 03:59:22] 2025-10-11 01:23:28,877 | INFO     | left removable region: 70
[2025-10-11 03:59:22] 2025-10-11 01:23:28,877 | INFO     | sum of square deviations: 549294020.0
[2025-10-11 03:59:22] 2025-10-11 01:23:28,878 | INFO     | sum of deviations: 646838571.0
[2025-10-11 03:59:22] 2025-10-11 01:23:28,878 | INFO     | mean x: 1760141722.0
[2025-10-11 03:59:22] 2025-10-11 01:23:28,878 | INFO     | mean y: 2335408.041322314
[2025-10-11 03:59:22] 2025-10-11 01:23:28,878 | INFO     | -- intersect: -2070375225.5387764
[2025-10-11 03:59:22] 2025-10-11 01:23:28,878 | INFO     | intersect: -2070375225.5387764
[2025-10-11 03:59:22] 2025-10-11 01:23:28,879 | INFO     | chi2: 0.00025644983216359916
[2025-10-11 03:59:22] 2025-10-11 01:23:28,879 | INFO     | -- intersect: -2070375225.5387764
[2025-10-11 03:59:22] 2025-10-11 01:23:28,879 | INFO     | current memory leak: 1.18 B/s (using 121 data points, chi2=0.00)
[2025-10-11 03:59:22] 2025-10-11 01:23:28,880 | INFO     | could have reported an average CPU frequency of 2584 MHz (10 samples)
[2025-10-11 03:59:22] 2025-10-11 01:23:28,880 | INFO     | ..............................
[2025-10-11 03:59:22] 2025-10-11 01:23:28,880 | INFO     | . Timing measurements:
[2025-10-11 03:59:22] 2025-10-11 01:23:28,880 | INFO     | . get job = 0 s
[2025-10-11 03:59:22] 2025-10-11 01:23:28,880 | INFO     | . initial setup = 1 s
[2025-10-11 03:59:22] 2025-10-11 01:23:28,880 | INFO     | . payload setup = 6 s
[2025-10-11 03:59:22] 2025-10-11 01:23:28,880 | INFO     | . stage-in = 0 s
[2025-10-11 03:59:22] 2025-10-11 01:23:28,880 | INFO     | . payload execution = 12011 s
[2025-10-11 03:59:22] 2025-10-11 01:23:28,880 | INFO     | . stage-out = 1 s
[2025-10-11 03:59:22] 2025-10-11 01:23:28,880 | INFO     | . log creation = 0 s
[2025-10-11 03:59:22] 2025-10-11 01:23:28,880 | INFO     | ..............................
[2025-10-11 03:59:22] 2025-10-11 01:23:28,982 | INFO     | 
[2025-10-11 03:59:22] 2025-10-11 01:23:28,982 | INFO     | job summary report
[2025-10-11 03:59:22] 2025-10-11 01:23:28,982 | INFO     | --------------------------------------------------
[2025-10-11 03:59:22] 2025-10-11 01:23:28,982 | INFO     | PanDA job id: 6835982253
[2025-10-11 03:59:22] 2025-10-11 01:23:28,982 | INFO     | task id: 46676269
[2025-10-11 03:59:22] 2025-10-11 01:23:28,982 | INFO     | errors: (none)
[2025-10-11 03:59:22] 2025-10-11 01:23:28,983 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-11 03:59:22] 2025-10-11 01:23:28,983 | INFO     | pilot state: finished 
[2025-10-11 03:59:22] 2025-10-11 01:23:28,983 | INFO     | transexitcode: 0
[2025-10-11 03:59:22] 2025-10-11 01:23:28,983 | INFO     | exeerrorcode: 0
[2025-10-11 03:59:22] 2025-10-11 01:23:28,983 | INFO     | exeerrordiag: 
[2025-10-11 03:59:22] 2025-10-11 01:23:28,983 | INFO     | exitcode: 0
[2025-10-11 03:59:22] 2025-10-11 01:23:28,983 | INFO     | exitmsg: OK
[2025-10-11 03:59:22] 2025-10-11 01:23:28,983 | INFO     | cpuconsumptiontime: 44219 s
[2025-10-11 03:59:22] 2025-10-11 01:23:28,983 | INFO     | nevents: 400
[2025-10-11 03:59:22] 2025-10-11 01:23:28,983 | INFO     | neventsw: 0
[2025-10-11 03:59:22] 2025-10-11 01:23:28,983 | INFO     | pid: 1656189
[2025-10-11 03:59:22] 2025-10-11 01:23:28,983 | INFO     | pgrp: 1656189
[2025-10-11 03:59:22] 2025-10-11 01:23:28,983 | INFO     | corecount: 4
[2025-10-11 03:59:22] 2025-10-11 01:23:28,983 | INFO     | event service: False
[2025-10-11 03:59:22] 2025-10-11 01:23:28,983 | INFO     | sizes: {0: 2348023, 1: 2348890, 6: 2349152, 12: 2349180, 12021: 2378979, 12024: 2388183, 12029: 2388321}
[2025-10-11 03:59:22] 2025-10-11 01:23:28,983 | INFO     | --------------------------------------------------
[2025-10-11 03:59:22] 2025-10-11 01:23:28,983 | INFO     | 
[2025-10-11 03:59:22] 2025-10-11 01:23:28,983 | INFO     | executing command: ls -lF /scratch/boinc/var/slot44/slots/0
[2025-10-11 03:59:22] 2025-10-11 01:23:29,001 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-11 03:59:22] 2025-10-11 01:23:29,001 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-11 03:59:22] 2025-10-11 01:23:29,002 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-11 03:59:22] 2025-10-11 01:23:29,002 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-11 03:59:22] 2025-10-11 01:23:29,002 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-11 03:59:22] 2025-10-11 01:23:29,002 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-11 03:59:22] 2025-10-11 01:23:29,002 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-11 03:59:22] 2025-10-11 01:23:29,002 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-11 03:59:22] 2025-10-11 01:23:29,002 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-11 03:59:22] 2025-10-11 01:23:29,002 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-11 03:59:22] 2025-10-11 01:23:29,002 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-11 03:59:22] 2025-10-11 01:23:29,002 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-11 03:59:22] 2025-10-11 01:23:29,002 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-11 03:59:22] 2025-10-11 01:23:29,003 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-11 03:59:22] 2025-10-11 01:23:29,003 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-11 03:59:22] 2025-10-11 01:23:29,003 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-11 03:59:22] 2025-10-11 01:23:29,003 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-11 03:59:22] 2025-10-11 01:23:29,003 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-11 03:59:22] 2025-10-11 01:23:29,003 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-11 03:59:22] 2025-10-11 01:23:29,003 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-11 03:59:22] 2025-10-11 01:23:29,003 | INFO     | job 6835982253 has completed (purged errors)
[2025-10-11 03:59:22] 2025-10-11 01:23:29,003 | INFO     | overall cleanup function is called
[2025-10-11 03:59:22] 2025-10-11 01:23:30,011 | INFO     | --- collectZombieJob: --- 10, [1656189]
[2025-10-11 03:59:22] 2025-10-11 01:23:30,012 | INFO     | zombie collector waiting for pid 1656189
[2025-10-11 03:59:22] 2025-10-11 01:23:30,012 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-11 03:59:22] 2025-10-11 01:23:30,012 | INFO     | collected zombie processes
[2025-10-11 03:59:22] 2025-10-11 01:23:30,012 | INFO     | will attempt to kill all subprocesses of pid=1656189
[2025-10-11 03:59:22] 2025-10-11 01:23:30,426 | INFO     | process IDs to be killed: [1656189] (in reverse order)
[2025-10-11 03:59:22] 2025-10-11 01:23:30,550 | WARNING  | found no corresponding commands to process id(s)
[2025-10-11 03:59:22] 2025-10-11 01:23:30,551 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-11 03:59:22] 2025-10-11 01:23:30,565 | INFO     | did not find any defunct processes belonging to 1656189
[2025-10-11 03:59:22] 2025-10-11 01:23:30,578 | INFO     | did not find any defunct processes belonging to 1656189
[2025-10-11 03:59:22] 2025-10-11 01:23:30,579 | INFO     | ready for new job
[2025-10-11 03:59:22] 2025-10-11 01:23:30,579 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-11 03:59:22] 2025-10-11 01:23:30,582 | INFO     | ***************************************
[2025-10-11 03:59:22] 2025-10-11 01:23:30,582 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-11 03:59:22] 2025-10-11 01:23:30,582 | INFO     | ***************************************
[2025-10-11 03:59:22] 2025-10-11 01:23:30,582 | INFO     | 
[2025-10-11 03:59:22] 2025-10-11 01:23:30,586 | INFO     | architecture information:
[2025-10-11 03:59:22] 2025-10-11 01:23:30,587 | INFO     | executing command: cat /etc/os-release
[2025-10-11 03:59:22] 2025-10-11 01:23:30,604 | INFO     | cat /etc/os-release:
[2025-10-11 03:59:22] NAME="CentOS Linux"
[2025-10-11 03:59:22] VERSION="7 (Core)"
[2025-10-11 03:59:22] ID="centos"
[2025-10-11 03:59:22] ID_LIKE="rhel fedora"
[2025-10-11 03:59:22] VERSION_ID="7"
[2025-10-11 03:59:22] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-11 03:59:22] ANSI_COLOR="0;31"
[2025-10-11 03:59:22] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-11 03:59:22] HOME_URL="https://www.centos.org/"
[2025-10-11 03:59:22] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-11 03:59:22] 
[2025-10-11 03:59:22] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-11 03:59:22] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-11 03:59:22] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-11 03:59:22] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-11 03:59:22] 
[2025-10-11 03:59:22] 2025-10-11 01:23:30,605 | INFO     | ***************************************
[2025-10-11 03:59:22] 2025-10-11 01:23:31,106 | INFO     | executing command: df -mP /scratch/boinc/var/slot44/slots/0
[2025-10-11 03:59:22] 2025-10-11 01:23:31,126 | INFO     | sufficient remaining disk space (691740344320 B)
[2025-10-11 03:59:22] 2025-10-11 01:23:31,126 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-11 03:59:22] 2025-10-11 01:23:31,127 | INFO     | current server update state: UPDATING_FINAL
[2025-10-11 03:59:22] 2025-10-11 01:23:31,127 | INFO     | update_server=False
[2025-10-11 03:59:22] 2025-10-11 01:23:31,127 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-11 03:59:22] 2025-10-11 01:23:31,127 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-11 03:59:22] 2025-10-11 01:23:31,128 | INFO     | aborting loop
[2025-10-11 03:59:22] 2025-10-11 01:23:31,357 | INFO     | all data control threads have been joined
[2025-10-11 03:59:22] 2025-10-11 01:23:31,762 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-11 03:59:22] 2025-10-11 01:23:31,990 | INFO     | all job control threads have been joined
[2025-10-11 03:59:22] 2025-10-11 01:23:32,132 | INFO     | [job] retrieve thread has finished
[2025-10-11 03:59:22] 2025-10-11 01:23:32,133 | INFO     | [job] job monitor thread has finished
[2025-10-11 03:59:22] 2025-10-11 01:23:32,140 | INFO     | [payload] failed_post thread has finished
[2025-10-11 03:59:22] 2025-10-11 01:23:32,362 | INFO     | [data] control thread has finished
[2025-10-11 03:59:22] 2025-10-11 01:23:32,451 | INFO     | all payload control threads have been joined
[2025-10-11 03:59:22] 2025-10-11 01:23:32,695 | INFO     | [payload] execute_payloads thread has finished
[2025-10-11 03:59:22] 2025-10-11 01:23:32,695 | INFO     | [job] validate thread has finished
[2025-10-11 03:59:22] 2025-10-11 01:23:32,996 | INFO     | [job] control thread has finished
[2025-10-11 03:59:22] 2025-10-11 01:23:33,132 | INFO     | [payload] validate_pre thread has finished
[2025-10-11 03:59:22] 2025-10-11 01:23:33,132 | INFO     | [job] create_data_payload thread has finished
[2025-10-11 03:59:22] 2025-10-11 01:23:33,455 | INFO     | [payload] control thread has finished
[2025-10-11 03:59:22] 2025-10-11 01:23:33,492 | INFO     | [payload] validate_post thread has finished
[2025-10-11 03:59:22] 2025-10-11 01:23:33,605 | INFO     | [data] copytool_in thread has finished
[2025-10-11 03:59:22] 2025-10-11 01:23:33,767 | INFO     | [data] copytool_out thread has finished
[2025-10-11 03:59:22] 2025-10-11 01:23:33,992 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-11 03:59:22] 2025-10-11 01:23:34,356 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-11 03:59:22] 2025-10-11 01:23:34,997 | INFO     | [job] queue monitor thread has finished
[2025-10-11 03:59:22] 2025-10-11 01:23:38,362 | INFO     | [data] queue_monitor thread has finished
[2025-10-11 03:59:22] 2025-10-11 01:23:41,677 | INFO     | job.realtimelogging is not enabled
[2025-10-11 03:59:22] 2025-10-11 01:23:42,682 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-11 03:59:22] 2025-10-11 01:24:02,375 | INFO     | PID=1635136 has CPU usage=3.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-11 03:59:22] 2025-10-11 01:24:02,375 | INFO     | .. there are 6 such processes running
[2025-10-11 03:59:22] 2025-10-11 01:24:02,376 | INFO     | found 0 job(s) in 20 queues
[2025-10-11 03:59:22] 2025-10-11 01:24:02,376 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-11 03:59:22] 2025-10-11 01:24:02,376 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-11 03:59:22] 2025-10-11 01:24:03,899 | INFO     | [monitor] cgroup control has ended
[2025-10-11 03:59:22] 2025-10-11 01:24:05,647 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22563514120000)>', '<ExcThread(monitor, started 22562929092352)>']
[2025-10-11 03:59:22] 2025-10-11 01:24:06,395 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-11 03:59:22] 2025-10-11 01:24:06,396 | INFO     | [monitor] control thread has ended
[2025-10-11 03:59:22] 2025-10-11 01:24:10,671 | INFO     | all workflow threads have been joined
[2025-10-11 03:59:22] 2025-10-11 01:24:10,672 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-11 03:59:22] 2025-10-11 01:24:10,672 | INFO     | traces error code: 0
[2025-10-11 03:59:22] 2025-10-11 01:24:10,673 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-11 03:59:22] 2025-10-11 01:24:10,866 [wrapper] ==== pilot stdout END ====
[2025-10-11 03:59:22] 2025-10-11 01:24:10,869 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-11 03:59:22] 2025-10-11 01:24:10,872 [wrapper] pilotpid: 1635136
[2025-10-11 03:59:22] 2025-10-11 01:24:10,875 [wrapper] Pilot exit status: 0
[2025-10-11 03:59:22] 2025-10-11 01:24:10,886 [wrapper] pandaids: 6835982253
[2025-10-11 03:59:22] 2025-10-11 01:24:10,966 [wrapper] cleanup supervisor_pilot 1954496 1635137
[2025-10-11 03:59:22] 2025-10-11 01:24:10,969 [wrapper] Test setup, not cleaning
[2025-10-11 03:59:22] 2025-10-11 01:24:10,972 [wrapper] apfmon messages muted
[2025-10-11 03:59:22] 2025-10-11 01:24:10,975 [wrapper] ==== wrapper stdout END ====
[2025-10-11 03:59:22] 2025-10-11 01:24:10,978 [wrapper] ==== wrapper stderr END ====
[2025-10-11 03:59:22]  *** Error codes and diagnostics ***
[2025-10-11 03:59:22]     "exeErrorCode": 0,
[2025-10-11 03:59:22]     "exeErrorDiag": "",
[2025-10-11 03:59:22]     "pilotErrorCode": 0,
[2025-10-11 03:59:22]     "pilotErrorDiag": "",
[2025-10-11 03:59:22]  *** Listing of results directory ***
[2025-10-11 03:59:22] total 412324
[2025-10-11 03:59:22] -rwx------ 1 boinc boinc     36292 Oct  8 12:04 runpilot2-wrapper.sh
[2025-10-11 03:59:22] -rw-r--r-- 1 boinc boinc      5112 Oct  8 12:04 queuedata.json
[2025-10-11 03:59:22] -rw-r--r-- 1 boinc boinc    557409 Oct  8 12:04 pilot3.tar.gz
[2025-10-11 03:59:22] -rw-r--r-- 1 boinc boinc       100 Oct 11 00:02 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-11 03:59:22] -rwxr-xr-x 1 boinc boinc      7986 Oct 11 00:02 run_atlas
[2025-10-11 03:59:22] -rw-r--r-- 1 boinc boinc       105 Oct 11 00:02 job.xml
[2025-10-11 03:59:22] -rw-r--r-- 2 boinc boinc 220988280 Oct 11 00:02 EVNT.46676267._000185.pool.root.1
[2025-10-11 03:59:22] -rw-r--r-- 1 boinc boinc      6633 Oct 11 00:02 init_data.xml
[2025-10-11 03:59:22] -rw-r--r-- 2 boinc boinc     15120 Oct 11 00:02 start_atlas.sh
[2025-10-11 03:59:22] drwxrwx--x 2 boinc boinc      4096 Oct 11 00:02 shared
[2025-10-11 03:59:22] -rw-r--r-- 2 boinc boinc    569670 Oct 11 00:02 input.tar.gz
[2025-10-11 03:59:22] -rw-r--r-- 1 boinc boinc         0 Oct 11 00:02 boinc_lockfile
[2025-10-11 03:59:22] -rw-r--r-- 1 boinc boinc      2547 Oct 11 00:02 pandaJob.out
[2025-10-11 03:59:22] -rw------- 1 boinc boinc    975517 Oct 11 00:02 agis_schedconf.cvmfs.json
[2025-10-11 03:59:22] drwx------ 5 boinc boinc      4096 Oct 11 00:02 pilot3
[2025-10-11 03:59:22] -rw------- 1 boinc boinc 193175821 Oct 11 03:22 HITS.46676269._004740.pool.root.1
[2025-10-11 03:59:22] -rw-r--r-- 1 boinc boinc       529 Oct 11 03:22 boinc_task_state.xml
[2025-10-11 03:59:22] -rw------- 1 boinc boinc      1033 Oct 11 03:23 memory_monitor_summary.json
[2025-10-11 03:59:22] -rw------- 1 boinc boinc   1560580 Oct 11 03:23 agis_ddmendpoints.agis.ALL.json
[2025-10-11 03:59:22] -rw------- 1 boinc boinc    370033 Oct 11 03:23 log.46676269._004740.job.log.tgz.1
[2025-10-11 03:59:22] -rw------- 1 boinc boinc      7823 Oct 11 03:23 heartbeat.json
[2025-10-11 03:59:22] -rw------- 1 boinc boinc        95 Oct 11 03:24 pilot_heartbeat.json
[2025-10-11 03:59:22] -rw------- 1 boinc boinc      4905 Oct 11 03:24 pilotlog.txt
[2025-10-11 03:59:22] -rw------- 1 boinc boinc   1704517 Oct 11 03:24 log.46676269._004740.job.log.1
[2025-10-11 03:59:22] -rw------- 1 boinc boinc       357 Oct 11 03:24 output.list
[2025-10-11 03:59:22] -rw-r--r-- 1 boinc boinc       620 Oct 11 03:24 runtime_log
[2025-10-11 03:59:22] -rw------- 1 boinc boinc   2088960 Oct 11 03:24 result.tar.gz
[2025-10-11 03:59:22] -rw------- 1 boinc boinc       666 Oct 11 03:24 zzgKDmnCgQ8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmJwXNDmk6PQem.diag
[2025-10-11 03:59:22] -rw-r--r-- 1 boinc boinc      9070 Oct 11 03:24 runtime_log.err
[2025-10-11 03:59:22] -rw-r--r-- 1 boinc boinc        27 Oct 11 03:59 wrapper_checkpoint.txt
[2025-10-11 03:59:22] -rw-r--r-- 1 boinc boinc      8192 Oct 11 03:59 boinc_mmap_file
[2025-10-11 03:59:22] -rw-r--r-- 1 boinc boinc     20739 Oct 11 03:59 stderr.txt
[2025-10-11 03:59:22] HITS file was successfully produced:
[2025-10-11 03:59:22] -rw------- 1 boinc boinc 193175821 Oct 11 03:22 shared/HITS.pool.root.1
[2025-10-11 03:59:22]  *** Contents of shared directory: ***
[2025-10-11 03:59:22] total 407088
[2025-10-11 03:59:22] -rw-r--r-- 2 boinc boinc 220988280 Oct 11 00:02 ATLAS.root_0
[2025-10-11 03:59:22] -rw-r--r-- 2 boinc boinc     15120 Oct 11 00:02 start_atlas.sh
[2025-10-11 03:59:22] -rw-r--r-- 2 boinc boinc    569670 Oct 11 00:02 input.tar.gz
[2025-10-11 03:59:22] -rw------- 1 boinc boinc 193175821 Oct 11 03:22 HITS.pool.root.1
[2025-10-11 03:59:22] -rw------- 1 boinc boinc   2088960 Oct 11 03:24 result.tar.gz
03:59:24 (1628796): run_atlas exited; CPU time 44727.309895
03:59:24 (1628796): called boinc_finish(0)

</stderr_txt>
]]>

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