Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
12:52:09 (702845): wrapper (7.7.26015): starting
12:52:09 (702845): wrapper: running run_atlas (--nthreads 2)
[2025-10-08 12:52:09] Arguments: --nthreads 2
[2025-10-08 12:52:09] Threads: 2
[2025-10-08 12:52:09] Checking for CVMFS
[2025-10-08 12:52:10] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-08 12:52:11] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-08 12:52:11] Running cvmfs_config stat atlas.cern.ch
[2025-10-08 12:52:11] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-08 12:52:11] 2.9.2.0 703042 0 29632 151469 3 1 2050084 36864000 0 130560 0 0 0.000 1291 2995 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-08 12:52:11] CVMFS is ok
[2025-10-08 12:52:11] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-08 12:52:11] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-08 12:52:11] Further information can be found at the LHC@home message board.
[2025-10-08 12:52:11] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-08 12:52:11] Checking for apptainer binary...
[2025-10-08 12:52:11] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-08 12:52:11] Running /usr/bin/apptainer --version
[2025-10-08 12:52:11] apptainer version 1.4.1-1.1
[2025-10-08 12:52:11] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-08 12:52:11] atlasA228a
[2025-10-08 12:52:11] apptainer works
[2025-10-08 12:52:11] Set ATHENA_PROC_NUMBER=2
[2025-10-08 12:52:11] Set ATHENA_CORE_NUMBER=2
[2025-10-08 12:52:11] Starting ATLAS job with PandaID=6835981668
[2025-10-08 12:52:11] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-08 14:52:47]  *** The last 200 lines of the pilot log: ***
[2025-10-08 14:52:47] 2025-10-08 12:52:04,027 | INFO     | overall cleanup function is called
[2025-10-08 14:52:47] 2025-10-08 12:52:05,033 | INFO     | --- collectZombieJob: --- 10, [713515]
[2025-10-08 14:52:47] 2025-10-08 12:52:05,033 | INFO     | zombie collector waiting for pid 713515
[2025-10-08 14:52:47] 2025-10-08 12:52:05,033 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-08 14:52:47] 2025-10-08 12:52:05,033 | INFO     | collected zombie processes
[2025-10-08 14:52:47] 2025-10-08 12:52:05,033 | INFO     | will attempt to kill all subprocesses of pid=713515
[2025-10-08 14:52:47] 2025-10-08 12:52:05,063 | INFO     | process IDs to be killed: [713515] (in reverse order)
[2025-10-08 14:52:47] 2025-10-08 12:52:05,085 | WARNING  | found no corresponding commands to process id(s)
[2025-10-08 14:52:47] 2025-10-08 12:52:05,085 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-08 14:52:47] 2025-10-08 12:52:05,086 | INFO     | did not find any defunct processes belonging to 713515
[2025-10-08 14:52:47] 2025-10-08 12:52:05,086 | INFO     | did not find any defunct processes belonging to 713515
[2025-10-08 14:52:47] 2025-10-08 12:52:05,086 | INFO     | ready for new job
[2025-10-08 14:52:47] 2025-10-08 12:52:05,086 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-08 14:52:47] 2025-10-08 12:52:05,087 | INFO     | ***************************************
[2025-10-08 14:52:47] 2025-10-08 12:52:05,087 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-08 14:52:47] 2025-10-08 12:52:05,087 | INFO     | ***************************************
[2025-10-08 14:52:47] 2025-10-08 12:52:05,087 | INFO     | 
[2025-10-08 14:52:47] 2025-10-08 12:52:05,087 | INFO     | architecture information:
[2025-10-08 14:52:47] 2025-10-08 12:52:05,087 | INFO     | executing command: cat /etc/os-release
[2025-10-08 14:52:47] 2025-10-08 12:52:05,097 | INFO     | cat /etc/os-release:
[2025-10-08 14:52:47] NAME="CentOS Linux"
[2025-10-08 14:52:47] VERSION="7 (Core)"
[2025-10-08 14:52:47] ID="centos"
[2025-10-08 14:52:47] ID_LIKE="rhel fedora"
[2025-10-08 14:52:47] VERSION_ID="7"
[2025-10-08 14:52:47] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-08 14:52:47] ANSI_COLOR="0;31"
[2025-10-08 14:52:47] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-08 14:52:47] HOME_URL="https://www.centos.org/"
[2025-10-08 14:52:47] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-08 14:52:47] 
[2025-10-08 14:52:47] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-08 14:52:47] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-08 14:52:47] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-08 14:52:47] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-08 14:52:47] 
[2025-10-08 14:52:47] 2025-10-08 12:52:05,097 | INFO     | ***************************************
[2025-10-08 14:52:47] 2025-10-08 12:52:05,601 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-08 14:52:47] 2025-10-08 12:52:05,613 | INFO     | sufficient remaining disk space (209530650624 B)
[2025-10-08 14:52:47] 2025-10-08 12:52:05,613 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-08 14:52:47] 2025-10-08 12:52:05,613 | INFO     | current server update state: UPDATING_FINAL
[2025-10-08 14:52:47] 2025-10-08 12:52:05,613 | INFO     | update_server=False
[2025-10-08 14:52:47] 2025-10-08 12:52:05,613 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-08 14:52:47] 2025-10-08 12:52:05,614 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-08 14:52:47] 2025-10-08 12:52:05,821 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-08 14:52:47] 2025-10-08 12:52:06,013 | INFO     | all data control threads have been joined
[2025-10-08 14:52:47] 2025-10-08 12:52:06,021 | INFO     | all job control threads have been joined
[2025-10-08 14:52:47] 2025-10-08 12:52:06,597 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-08 14:52:47] 2025-10-08 12:52:06,598 | INFO     | aborting loop
[2025-10-08 14:52:47] 2025-10-08 12:52:06,619 | INFO     | [job] retrieve thread has finished
[2025-10-08 14:52:47] 2025-10-08 12:52:06,619 | INFO     | [job] queue monitor thread has finished
[2025-10-08 14:52:47] 2025-10-08 12:52:06,696 | INFO     | all payload control threads have been joined
[2025-10-08 14:52:47] 2025-10-08 12:52:06,943 | INFO     | [payload] execute_payloads thread has finished
[2025-10-08 14:52:47] 2025-10-08 12:52:07,020 | INFO     | [data] control thread has finished
[2025-10-08 14:52:47] 2025-10-08 12:52:07,027 | INFO     | [job] control thread has finished
[2025-10-08 14:52:47] 2025-10-08 12:52:07,148 | INFO     | [job] validate thread has finished
[2025-10-08 14:52:47] 2025-10-08 12:52:07,181 | INFO     | [data] copytool_in thread has finished
[2025-10-08 14:52:47] 2025-10-08 12:52:07,307 | INFO     | [job] create_data_payload thread has finished
[2025-10-08 14:52:47] 2025-10-08 12:52:07,334 | INFO     | [payload] validate_pre thread has finished
[2025-10-08 14:52:47] 2025-10-08 12:52:07,430 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-08 14:52:47] 2025-10-08 12:52:07,508 | INFO     | [payload] failed_post thread has finished
[2025-10-08 14:52:47] 2025-10-08 12:52:07,604 | INFO     | [job] job monitor thread has finished
[2025-10-08 14:52:47] 2025-10-08 12:52:07,702 | INFO     | [payload] control thread has finished
[2025-10-08 14:52:47] 2025-10-08 12:52:07,827 | INFO     | [data] copytool_out thread has finished
[2025-10-08 14:52:47] 2025-10-08 12:52:08,076 | INFO     | [payload] validate_post thread has finished
[2025-10-08 14:52:47] 2025-10-08 12:52:08,146 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-08 14:52:47] 2025-10-08 12:52:12,152 | INFO     | [data] queue_monitor thread has finished
[2025-10-08 14:52:47] 2025-10-08 12:52:29,885 [wrapper] supervise_pilot (15 min periods counter: 9)
[2025-10-08 14:52:47] 2025-10-08 12:52:35,803 | INFO     | PID=707103 has CPU usage=0.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-10-08 14:52:47] 2025-10-08 12:52:35,803 | INFO     | found 0 job(s) in 20 queues
[2025-10-08 14:52:47] 2025-10-08 12:52:35,804 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-08 14:52:47] 2025-10-08 12:52:35,804 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-08 14:52:47] 2025-10-08 12:52:41,306 | INFO     | [monitor] cgroup control has ended
[2025-10-08 14:52:47] 2025-10-08 12:52:42,357 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140215972992832)>', '<ExcThread(monitor, started 140215465252608)>']
[2025-10-08 14:52:47] 2025-10-08 12:52:42,833 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-08 14:52:47] 2025-10-08 12:52:42,834 | INFO     | [monitor] control thread has ended
[2025-10-08 14:52:47] 2025-10-08 12:52:47,361 | INFO     | all workflow threads have been joined
[2025-10-08 14:52:47] 2025-10-08 12:52:47,362 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-08 14:52:47] 2025-10-08 12:52:47,362 | INFO     | traces error code: 0
[2025-10-08 14:52:47] 2025-10-08 12:52:47,363 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-08 14:52:47] 2025-10-08 12:52:47,406 [wrapper] ==== pilot stdout END ====
[2025-10-08 14:52:47] 2025-10-08 12:52:47,409 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-08 14:52:47] 2025-10-08 12:52:47,411 [wrapper] pilotpid: 707103
[2025-10-08 14:52:47] 2025-10-08 12:52:47,413 [wrapper] Pilot exit status: 0
[2025-10-08 14:52:47] 2025-10-08 12:52:47,420 [wrapper] pandaids: 6835981668
[2025-10-08 14:52:47] 2025-10-08 12:52:47,435 [wrapper] cleanup supervisor_pilot  730181 707104
[2025-10-08 14:52:47] 2025-10-08 12:52:47,437 [wrapper] Test setup, not cleaning
[2025-10-08 14:52:47] 2025-10-08 12:52:47,439 [wrapper] apfmon messages muted
[2025-10-08 14:52:47] 2025-10-08 12:52:47,441 [wrapper] ==== wrapper stdout END ====
[2025-10-08 14:52:47] 2025-10-08 12:52:47,443 [wrapper] ==== wrapper stderr END ====
[2025-10-08 14:52:47]  *** Error codes and diagnostics ***
[2025-10-08 14:52:47]     "exeErrorCode": 0,
[2025-10-08 14:52:47]     "exeErrorDiag": "",
[2025-10-08 14:52:47]     "pilotErrorCode": 0,
[2025-10-08 14:52:47]     "pilotErrorDiag": "",
[2025-10-08 14:52:47]  *** Listing of results directory ***
[2025-10-08 14:52:47] total 404112
[2025-10-08 14:52:47] -rw-r--r-- 1 boinc boinc    557409 Oct  8 11:48 pilot3.tar.gz
[2025-10-08 14:52:47] -rw-r--r-- 1 boinc boinc      5112 Oct  8 12:01 queuedata.json
[2025-10-08 14:52:47] -rwx------ 1 boinc boinc     36292 Oct  8 12:01 runpilot2-wrapper.sh
[2025-10-08 14:52:47] -rw-r--r-- 1 boinc boinc       100 Oct  8 12:52 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-08 14:52:47] -rwxr-xr-x 1 boinc boinc      7986 Oct  8 12:52 run_atlas
[2025-10-08 14:52:47] -rw-r--r-- 1 boinc boinc       105 Oct  8 12:52 job.xml
[2025-10-08 14:52:47] -rw-r--r-- 2 boinc boinc 219837870 Oct  8 12:52 EVNT.46676267._000221.pool.root.1
[2025-10-08 14:52:47] -rw-r--r-- 2 boinc boinc    569676 Oct  8 12:52 input.tar.gz
[2025-10-08 14:52:47] -rw-r--r-- 2 boinc boinc     15120 Oct  8 12:52 start_atlas.sh
[2025-10-08 14:52:47] drwxrwx--x 2 boinc boinc      4096 Oct  8 12:52 shared
[2025-10-08 14:52:47] -rw-r--r-- 1 boinc boinc         0 Oct  8 12:52 boinc_setup_complete
[2025-10-08 14:52:47] -rw-r--r-- 1 boinc boinc      6206 Oct  8 12:52 init_data.xml
[2025-10-08 14:52:47] -rw-r--r-- 1 boinc boinc         0 Oct  8 12:52 boinc_lockfile
[2025-10-08 14:52:47] -rw-r--r-- 1 boinc boinc      2547 Oct  8 12:52 pandaJob.out
[2025-10-08 14:52:47] -rw------- 1 boinc boinc    979793 Oct  8 12:52 agis_schedconf.cvmfs.json
[2025-10-08 14:52:47] -rw------- 1 boinc boinc   1560401 Oct  8 12:52 agis_ddmendpoints.agis.ALL.json
[2025-10-08 14:52:47] drwx------ 5 boinc boinc      4096 Oct  8 12:52 pilot3
[2025-10-08 14:52:47] -rw------- 1 boinc boinc 187481945 Oct  8 14:51 HITS.46676269._004540.pool.root.1
[2025-10-08 14:52:47] -rw-r--r-- 1 boinc boinc       529 Oct  8 14:51 boinc_task_state.xml
[2025-10-08 14:52:47] -rw------- 1 boinc boinc      1011 Oct  8 14:51 memory_monitor_summary.json
[2025-10-08 14:52:47] -rw------- 1 boinc boinc    266954 Oct  8 14:51 log.46676269._004540.job.log.tgz.1
[2025-10-08 14:52:47] -rw------- 1 boinc boinc      7750 Oct  8 14:52 heartbeat.json
[2025-10-08 14:52:47] -rw-r--r-- 1 boinc boinc        27 Oct  8 14:52 wrapper_checkpoint.txt
[2025-10-08 14:52:47] -rw-r--r-- 1 boinc boinc      8192 Oct  8 14:52 boinc_mmap_file
[2025-10-08 14:52:47] -rw------- 1 boinc boinc        95 Oct  8 14:52 pilot_heartbeat.json
[2025-10-08 14:52:47] -rw------- 1 boinc boinc      4751 Oct  8 14:52 pilotlog.txt
[2025-10-08 14:52:47] -rw------- 1 boinc boinc   1032106 Oct  8 14:52 log.46676269._004540.job.log.1
[2025-10-08 14:52:47] -rw------- 1 boinc boinc       357 Oct  8 14:52 output.list
[2025-10-08 14:52:47] -rw-r--r-- 1 boinc boinc       620 Oct  8 14:52 runtime_log
[2025-10-08 14:52:47] -rw------- 1 boinc boinc   1320960 Oct  8 14:52 result.tar.gz
[2025-10-08 14:52:47] -rw-r--r-- 1 boinc boinc      8797 Oct  8 14:52 runtime_log.err
[2025-10-08 14:52:47] -rw------- 1 boinc boinc       663 Oct  8 14:52 Ez8KDmt9fQ8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmfvXNDmtI6PWm.diag
[2025-10-08 14:52:47] -rw-r--r-- 1 boinc boinc     10787 Oct  8 14:52 stderr.txt
[2025-10-08 14:52:47] HITS file was successfully produced:
[2025-10-08 14:52:47] -rw------- 1 boinc boinc 187481945 Oct  8 14:51 shared/HITS.pool.root.1
[2025-10-08 14:52:47]  *** Contents of shared directory: ***
[2025-10-08 14:52:47] total 399648
[2025-10-08 14:52:47] -rw-r--r-- 2 boinc boinc 219837870 Oct  8 12:52 ATLAS.root_0
[2025-10-08 14:52:47] -rw-r--r-- 2 boinc boinc    569676 Oct  8 12:52 input.tar.gz
[2025-10-08 14:52:47] -rw-r--r-- 2 boinc boinc     15120 Oct  8 12:52 start_atlas.sh
[2025-10-08 14:52:47] -rw------- 1 boinc boinc 187481945 Oct  8 14:51 HITS.pool.root.1
[2025-10-08 14:52:47] -rw------- 1 boinc boinc   1320960 Oct  8 14:52 result.tar.gz
14:52:48 (702845): run_atlas exited; CPU time 13917.138082
14:52:48 (702845): called boinc_finish(0)

</stderr_txt>
]]>

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