Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
16:15:58 (30703): wrapper (7.7.26015): starting
16:15:58 (30703): wrapper: running run_atlas (--nthreads 8)
[2025-10-08 16:15:58] Arguments: --nthreads 8
[2025-10-08 16:15:58] Threads: 8
[2025-10-08 16:15:58] Checking for CVMFS
[2025-10-08 16:15:59] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-08 16:16:00] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-08 16:16:00] Running cvmfs_config stat atlas.cern.ch
[2025-10-08 16:16:01] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-08 16:16:01] 2.11.2.0 13026 214882 138228 151474 0 201 23897204 25165825 4538 130560 0 118363064 99.887 63567865 3624 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-10-08 16:16:01] CVMFS is ok
[2025-10-08 16:16:01] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-08 16:16:01] Checking for apptainer binary...
[2025-10-08 16:16:01] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-08 16:16:01] Running /usr/bin/apptainer --version
[2025-10-08 16:16:01] apptainer version 1.3.2-1.el7
[2025-10-08 16:16:01] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-08 16:16:05] cg-vwn329.simple-grid.lan
[2025-10-08 16:16:05] apptainer works
[2025-10-08 16:16:05] Set ATHENA_PROC_NUMBER=8
[2025-10-08 16:16:05] Set ATHENA_CORE_NUMBER=8
[2025-10-08 16:16:05] Starting ATLAS job with PandaID=6835977571
[2025-10-08 16:16:05] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-08 20:33:53]  *** The last 200 lines of the pilot log: ***
[2025-10-08 20:33:53] 2025-10-08 18:32:43,627 | INFO     | monitor loop #1102: job 0:6835977571 is in state 'finished'
[2025-10-08 20:33:53] 2025-10-08 18:32:43,627 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-08 20:33:53] 2025-10-08 18:32:43,763 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-08 20:33:53] 2025-10-08 18:32:43,764 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-10-08 20:33:53] 2025-10-08 18:32:43,766 | INFO     | using path: /var/lib/boinc/slots/5/PanDA_Pilot-6835977571/memory_monitor_summary.json (trf name=prmon)
[2025-10-08 20:33:53] 2025-10-08 18:32:43,767 | INFO     | extracted standard info from prmon json
[2025-10-08 20:33:53] 2025-10-08 18:32:43,767 | INFO     | extracted standard memory fields from prmon json
[2025-10-08 20:33:53] 2025-10-08 18:32:43,767 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-08 20:33:53] 2025-10-08 18:32:43,767 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-08 20:33:53] 2025-10-08 18:32:43,767 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-08 20:33:53] 2025-10-08 18:32:43,772 | INFO     | fitting pss+swap vs Time
[2025-10-08 20:33:53] 2025-10-08 18:32:43,773 | INFO     | sum of square deviations: 4340323240.0
[2025-10-08 20:33:53] 2025-10-08 18:32:43,775 | INFO     | sum of deviations: -22570197823.000008
[2025-10-08 20:33:53] 2025-10-08 18:32:43,776 | INFO     | mean x: 1759940932.0
[2025-10-08 20:33:53] 2025-10-08 18:32:43,776 | INFO     | mean y: 2511782.315352697
[2025-10-08 20:33:53] 2025-10-08 18:32:43,776 | INFO     | -- intersect: 9154414254.914377
[2025-10-08 20:33:53] 2025-10-08 18:32:43,776 | INFO     | intersect: 9154414254.914377
[2025-10-08 20:33:53] 2025-10-08 18:32:43,777 | INFO     | chi2: 3.1930048184330193
[2025-10-08 20:33:53] 2025-10-08 18:32:43,777 | INFO     | sum of square deviations: 4075741535.0
[2025-10-08 20:33:53] 2025-10-08 18:32:43,779 | INFO     | sum of deviations: -6157502656.499986
[2025-10-08 20:33:53] 2025-10-08 18:32:43,779 | INFO     | mean x: 1759940779.5
[2025-10-08 20:33:53] 2025-10-08 18:32:43,780 | INFO     | mean y: 2521088.495762712
[2025-10-08 20:33:53] 2025-10-08 18:32:43,780 | INFO     | -- intersect: 2661384495.8030434
[2025-10-08 20:33:53] 2025-10-08 18:32:43,780 | INFO     | intersect: 2661384495.8030434
[2025-10-08 20:33:53] 2025-10-08 18:32:43,780 | INFO     | chi2: 2.436823715212411
[2025-10-08 20:33:53] 2025-10-08 18:32:43,780 | INFO     | current chi2=2.436823715212411 (change=23.682429129302328 %)
[2025-10-08 20:33:53] 2025-10-08 18:32:43,780 | INFO     | right removable region: 235
[2025-10-08 20:33:53] 2025-10-08 18:32:43,781 | INFO     | sum of square deviations: 4075741535.0
[2025-10-08 20:33:53] 2025-10-08 18:32:43,783 | INFO     | sum of deviations: -72852822312.5
[2025-10-08 20:33:53] 2025-10-08 18:32:43,783 | INFO     | mean x: 1759941084.5
[2025-10-08 20:33:53] 2025-10-08 18:32:43,783 | INFO     | mean y: 2540558.588983051
[2025-10-08 20:33:53] 2025-10-08 18:32:43,784 | INFO     | -- intersect: 31461030751.968487
[2025-10-08 20:33:53] 2025-10-08 18:32:43,784 | INFO     | intersect: 31461030751.968487
[2025-10-08 20:33:53] 2025-10-08 18:32:43,784 | INFO     | chi2: 1.0192767377955985
[2025-10-08 20:33:53] 2025-10-08 18:32:43,784 | INFO     | current chi2=1.0192767377955985 (change=68.07782024282028 %)
[2025-10-08 20:33:53] 2025-10-08 18:32:43,785 | INFO     | sum of square deviations: 3822136780.0
[2025-10-08 20:33:53] 2025-10-08 18:32:43,787 | INFO     | sum of deviations: -73329675508.0
[2025-10-08 20:33:53] 2025-10-08 18:32:43,787 | INFO     | mean x: 1759941237.0
[2025-10-08 20:33:53] 2025-10-08 18:32:43,787 | INFO     | mean y: 2540813.8354978357
[2025-10-08 20:33:53] 2025-10-08 18:32:43,787 | INFO     | -- intersect: 33767925793.689133
[2025-10-08 20:33:53] 2025-10-08 18:32:43,787 | INFO     | intersect: 33767925793.689133
[2025-10-08 20:33:53] 2025-10-08 18:32:43,788 | INFO     | chi2: 0.9945877103874843
[2025-10-08 20:33:53] 2025-10-08 18:32:43,788 | INFO     | current chi2=0.9945877103874843 (change=2.422210425552282 %)
[2025-10-08 20:33:53] 2025-10-08 18:32:43,788 | INFO     | left removable region: 20
[2025-10-08 20:33:53] 2025-10-08 18:32:43,789 | INFO     | sum of square deviations: 3081657780.0
[2025-10-08 20:33:53] 2025-10-08 18:32:43,790 | INFO     | sum of deviations: -43376718628.00001
[2025-10-08 20:33:53] 2025-10-08 18:32:43,791 | INFO     | mean x: 1759941359.0
[2025-10-08 20:33:53] 2025-10-08 18:32:43,791 | INFO     | mean y: 2542584.4558139537
[2025-10-08 20:33:53] 2025-10-08 18:32:43,791 | INFO     | -- intersect: 24775079504.867188
[2025-10-08 20:33:53] 2025-10-08 18:32:43,791 | INFO     | intersect: 24775079504.867188
[2025-10-08 20:33:53] 2025-10-08 18:32:43,791 | INFO     | chi2: 0.19334715712542702
[2025-10-08 20:33:53] 2025-10-08 18:32:43,791 | INFO     | -- intersect: 24775079504.867188
[2025-10-08 20:33:53] 2025-10-08 18:32:43,792 | INFO     | current memory leak: -14.08 B/s (using 215 data points, chi2=0.19)
[2025-10-08 20:33:53] 2025-10-08 18:32:43,792 | INFO     | could have reported an average CPU frequency of 1999 MHz (11 samples)
[2025-10-08 20:33:53] 2025-10-08 18:32:43,793 | INFO     | ..............................
[2025-10-08 20:33:53] 2025-10-08 18:32:43,793 | INFO     | . Timing measurements:
[2025-10-08 20:33:53] 2025-10-08 18:32:43,793 | INFO     | . get job = 0 s
[2025-10-08 20:33:53] 2025-10-08 18:32:43,793 | INFO     | . initial setup = 4 s
[2025-10-08 20:33:53] 2025-10-08 18:32:43,793 | INFO     | . payload setup = 116 s
[2025-10-08 20:33:53] 2025-10-08 18:32:43,793 | INFO     | . stage-in = 0 s
[2025-10-08 20:33:53] 2025-10-08 18:32:43,793 | INFO     | . payload execution = 14797 s
[2025-10-08 20:33:53] 2025-10-08 18:32:43,793 | INFO     | . stage-out = 1 s
[2025-10-08 20:33:53] 2025-10-08 18:32:43,793 | INFO     | . log creation = 0 s
[2025-10-08 20:33:53] 2025-10-08 18:32:43,793 | INFO     | ..............................
[2025-10-08 20:33:53] 2025-10-08 18:32:43,916 | INFO     | 
[2025-10-08 20:33:53] 2025-10-08 18:32:43,917 | INFO     | job summary report
[2025-10-08 20:33:53] 2025-10-08 18:32:43,917 | INFO     | --------------------------------------------------
[2025-10-08 20:33:53] 2025-10-08 18:32:43,917 | INFO     | PanDA job id: 6835977571
[2025-10-08 20:33:53] 2025-10-08 18:32:43,917 | INFO     | task id: 46676269
[2025-10-08 20:33:53] 2025-10-08 18:32:43,917 | INFO     | errors: (none)
[2025-10-08 20:33:53] 2025-10-08 18:32:43,917 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-08 20:33:53] 2025-10-08 18:32:43,917 | INFO     | pilot state: finished 
[2025-10-08 20:33:53] 2025-10-08 18:32:43,917 | INFO     | transexitcode: 0
[2025-10-08 20:33:53] 2025-10-08 18:32:43,917 | INFO     | exeerrorcode: 0
[2025-10-08 20:33:53] 2025-10-08 18:32:43,917 | INFO     | exeerrordiag: 
[2025-10-08 20:33:53] 2025-10-08 18:32:43,918 | INFO     | exitcode: 0
[2025-10-08 20:33:53] 2025-10-08 18:32:43,918 | INFO     | exitmsg: OK
[2025-10-08 20:33:53] 2025-10-08 18:32:43,918 | INFO     | cpuconsumptiontime: 56071 s
[2025-10-08 20:33:53] 2025-10-08 18:32:43,918 | INFO     | nevents: 400
[2025-10-08 20:33:53] 2025-10-08 18:32:43,918 | INFO     | neventsw: 0
[2025-10-08 20:33:53] 2025-10-08 18:32:43,918 | INFO     | pid: 8613
[2025-10-08 20:33:53] 2025-10-08 18:32:43,918 | INFO     | pgrp: 8613
[2025-10-08 20:33:53] 2025-10-08 18:32:43,918 | INFO     | corecount: 8
[2025-10-08 20:33:53] 2025-10-08 18:32:43,918 | INFO     | event service: False
[2025-10-08 20:33:53] 2025-10-08 18:32:43,919 | INFO     | sizes: {0: 2348681, 1: 2348880, 12: 2348880, 23: 2348908, 34: 2348936, 45: 2348964, 55: 2349120, 66: 2349148, 77: 2349176, 88: 2349232, 96: 2349522, 98: 2349830, 1
[2025-10-08 20:33:53] 2025-10-08 18:32:43,919 | INFO     | --------------------------------------------------
[2025-10-08 20:33:53] 2025-10-08 18:32:43,919 | INFO     | 
[2025-10-08 20:33:53] 2025-10-08 18:32:43,919 | INFO     | executing command: ls -lF /var/lib/boinc/slots/5
[2025-10-08 20:33:53] 2025-10-08 18:32:44,231 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-08 20:33:53] 2025-10-08 18:32:44,231 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-08 20:33:53] 2025-10-08 18:32:44,232 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-08 20:33:53] 2025-10-08 18:32:44,232 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-08 20:33:53] 2025-10-08 18:32:44,232 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-08 20:33:53] 2025-10-08 18:32:44,232 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-08 20:33:53] 2025-10-08 18:32:44,232 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-08 20:33:53] 2025-10-08 18:32:44,232 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-08 20:33:53] 2025-10-08 18:32:44,232 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-08 20:33:53] 2025-10-08 18:32:44,232 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-08 20:33:53] 2025-10-08 18:32:44,232 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-08 20:33:53] 2025-10-08 18:32:44,232 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-08 20:33:53] 2025-10-08 18:32:44,232 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-08 20:33:53] 2025-10-08 18:32:44,233 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-08 20:33:53] 2025-10-08 18:32:44,233 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-08 20:33:53] 2025-10-08 18:32:44,233 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-08 20:33:53] 2025-10-08 18:32:44,233 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-08 20:33:53] 2025-10-08 18:32:44,233 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-08 20:33:53] 2025-10-08 18:32:44,233 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-08 20:33:53] 2025-10-08 18:32:44,233 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-08 20:33:53] 2025-10-08 18:32:44,233 | INFO     | job 6835977571 has completed (purged errors)
[2025-10-08 20:33:53] 2025-10-08 18:32:44,233 | INFO     | overall cleanup function is called
[2025-10-08 20:33:53] 2025-10-08 18:32:45,243 | INFO     | --- collectZombieJob: --- 10, [8613]
[2025-10-08 20:33:53] 2025-10-08 18:32:45,243 | INFO     | zombie collector waiting for pid 8613
[2025-10-08 20:33:53] 2025-10-08 18:32:45,243 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-08 20:33:53] 2025-10-08 18:32:45,243 | INFO     | collected zombie processes
[2025-10-08 20:33:53] 2025-10-08 18:32:45,243 | INFO     | will attempt to kill all subprocesses of pid=8613
[2025-10-08 20:33:53] 2025-10-08 18:32:45,368 | INFO     | process IDs to be killed: [8613] (in reverse order)
[2025-10-08 20:33:53] 2025-10-08 18:32:46,473 | WARNING  | found no corresponding commands to process id(s)
[2025-10-08 20:33:53] 2025-10-08 18:32:46,473 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-08 20:33:53] 2025-10-08 18:32:46,477 | INFO     | did not find any defunct processes belonging to 8613
[2025-10-08 20:33:53] 2025-10-08 18:32:46,480 | INFO     | did not find any defunct processes belonging to 8613
[2025-10-08 20:33:53] 2025-10-08 18:32:46,480 | INFO     | ready for new job
[2025-10-08 20:33:53] 2025-10-08 18:32:46,480 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-08 20:33:53] 2025-10-08 18:32:46,483 | INFO     | ***************************************
[2025-10-08 20:33:53] 2025-10-08 18:32:46,483 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-08 20:33:53] 2025-10-08 18:32:46,483 | INFO     | ***************************************
[2025-10-08 20:33:53] 2025-10-08 18:32:46,483 | INFO     | 
[2025-10-08 20:33:53] 2025-10-08 18:32:46,484 | INFO     | pilot is running in a VM
[2025-10-08 20:33:53] 2025-10-08 18:32:46,484 | INFO     | architecture information:
[2025-10-08 20:33:53] 2025-10-08 18:32:46,496 | INFO     | executing command: cat /etc/os-release
[2025-10-08 20:33:53] 2025-10-08 18:32:46,760 | INFO     | cat /etc/os-release:
[2025-10-08 20:33:53] NAME="CentOS Linux"
[2025-10-08 20:33:53] VERSION="7 (Core)"
[2025-10-08 20:33:53] ID="centos"
[2025-10-08 20:33:53] ID_LIKE="rhel fedora"
[2025-10-08 20:33:53] VERSION_ID="7"
[2025-10-08 20:33:53] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-08 20:33:53] ANSI_COLOR="0;31"
[2025-10-08 20:33:53] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-08 20:33:53] HOME_URL="https://www.centos.org/"
[2025-10-08 20:33:53] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-08 20:33:53] 
[2025-10-08 20:33:53] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-08 20:33:53] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-08 20:33:53] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-08 20:33:53] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-08 20:33:53] 
[2025-10-08 20:33:53] 2025-10-08 18:32:46,760 | INFO     | ***************************************
[2025-10-08 20:33:53] 2025-10-08 18:32:47,264 | INFO     | executing command: df -mP /var/lib/boinc/slots/5
[2025-10-08 20:33:53] 2025-10-08 18:32:47,511 | INFO     | sufficient remaining disk space (496433627136 B)
[2025-10-08 20:33:53] 2025-10-08 18:32:47,512 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-08 20:33:53] 2025-10-08 18:32:47,512 | INFO     | current server update state: UPDATING_FINAL
[2025-10-08 20:33:53] 2025-10-08 18:32:47,512 | INFO     | update_server=False
[2025-10-08 20:33:53] 2025-10-08 18:32:47,512 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-08 20:33:53] 2025-10-08 18:32:47,515 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-08 20:33:53] 2025-10-08 18:32:47,516 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-08 20:33:53] 2025-10-08 18:32:47,516 | INFO     | aborting loop
[2025-10-08 20:33:53] 2025-10-08 18:32:48,169 | INFO     | all data control threads have been joined
[2025-10-08 20:33:53] 2025-10-08 18:32:48,400 | INFO     | all payload control threads have been joined
[2025-10-08 20:33:53] 2025-10-08 18:32:48,519 | INFO     | [job] retrieve thread has finished
[2025-10-08 20:33:53] 2025-10-08 18:32:48,522 | INFO     | [job] job monitor thread has finished
[2025-10-08 20:33:53] 2025-10-08 18:32:48,812 | INFO     | all job control threads have been joined
[2025-10-08 20:33:53] 2025-10-08 18:32:48,921 | INFO     | [job] validate thread has finished
[2025-10-08 20:33:53] 2025-10-08 18:32:48,928 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-08 20:33:53] 2025-10-08 18:32:48,929 | INFO     | [payload] validate_post thread has finished
[2025-10-08 20:33:53] 2025-10-08 18:32:48,929 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-08 20:33:53] 2025-10-08 18:32:48,946 | INFO     | [payload] validate_pre thread has finished
[2025-10-08 20:33:53] 2025-10-08 18:32:49,044 | INFO     | [payload] failed_post thread has finished
[2025-10-08 20:33:53] 2025-10-08 18:32:49,070 | INFO     | [data] copytool_in thread has finished
[2025-10-08 20:33:53] 2025-10-08 18:32:49,177 | INFO     | [data] control thread has finished
[2025-10-08 20:33:53] 2025-10-08 18:32:49,371 | INFO     | [payload] execute_payloads thread has finished
[2025-10-08 20:33:53] 2025-10-08 18:32:49,406 | INFO     | [payload] control thread has finished
[2025-10-08 20:33:53] 2025-10-08 18:32:49,522 | INFO     | [data] copytool_out thread has finished
[2025-10-08 20:33:53] 2025-10-08 18:32:49,554 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-08 20:33:53] 2025-10-08 18:32:49,819 | INFO     | [job] control thread has finished
[2025-10-08 20:33:53] 2025-10-08 18:32:49,940 | INFO     | [job] queue monitor thread has finished
[2025-10-08 20:33:53] 2025-10-08 18:32:49,967 | INFO     | [job] create_data_payload thread has finished
[2025-10-08 20:33:53] 2025-10-08 18:32:52,936 | INFO     | [data] queue_monitor thread has finished
[2025-10-08 20:33:53] 2025-10-08 18:33:15,992 | INFO     | PID=2073 has CPU usage=1.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-10-08 20:33:53] 2025-10-08 18:33:15,993 | INFO     | .. there are 9 such processes running
[2025-10-08 20:33:53] 2025-10-08 18:33:15,995 | INFO     | found 0 job(s) in 20 queues
[2025-10-08 20:33:53] 2025-10-08 18:33:15,995 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-08 20:33:53] 2025-10-08 18:33:15,995 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-08 20:33:53] 2025-10-08 18:33:42,345 | INFO     | [monitor] cgroup control has ended
[2025-10-08 20:33:53] 2025-10-08 18:33:44,067 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140172629956416)>', '<ExcThread(monitor, started 140171894847232)>']
[2025-10-08 20:33:53] 2025-10-08 18:33:44,161 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-08 20:33:53] 2025-10-08 18:33:44,162 | INFO     | [monitor] control thread has ended
[2025-10-08 20:33:53] 2025-10-08 18:33:49,093 | INFO     | all workflow threads have been joined
[2025-10-08 20:33:53] 2025-10-08 18:33:49,093 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-08 20:33:53] 2025-10-08 18:33:49,093 | INFO     | traces error code: 0
[2025-10-08 20:33:53] 2025-10-08 18:33:49,093 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-08 20:33:53] 2025-10-08 18:33:49,565 [wrapper] ==== pilot stdout END ====
[2025-10-08 20:33:53] 2025-10-08 18:33:49,662 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-08 20:33:53] 2025-10-08 18:33:49,748 [wrapper] pilotpid: 2073
[2025-10-08 20:33:53] 2025-10-08 18:33:49,854 [wrapper] Pilot exit status: 0
[2025-10-08 20:33:53] 2025-10-08 18:33:50,289 [wrapper] pandaids: 6835977571
[2025-10-08 20:33:53] 2025-10-08 18:33:51,399 [wrapper] cleanup supervisor_pilot 18208 2074
[2025-10-08 20:33:53] 2025-10-08 18:33:51,429 [wrapper] Test setup, not cleaning
[2025-10-08 20:33:53] 2025-10-08 18:33:51,464 [wrapper] apfmon messages muted
[2025-10-08 20:33:53] 2025-10-08 18:33:51,512 [wrapper] ==== wrapper stdout END ====
[2025-10-08 20:33:53] 2025-10-08 18:33:51,554 [wrapper] ==== wrapper stderr END ====
[2025-10-08 20:33:53]  *** Error codes and diagnostics ***
[2025-10-08 20:33:53]     "exeErrorCode": 0,
[2025-10-08 20:33:53]     "exeErrorDiag": "",
[2025-10-08 20:33:53]     "pilotErrorCode": 0,
[2025-10-08 20:33:53]     "pilotErrorDiag": "",
[2025-10-08 20:33:53]  *** Listing of results directory ***
[2025-10-08 20:33:53] total 418868
[2025-10-08 20:33:53] -rw-r--r--. 1 boinc boinc    557409 Oct  8 11:48 pilot3.tar.gz
[2025-10-08 20:33:53] -rw-r--r--. 1 boinc boinc      5112 Oct  8 11:53 queuedata.json
[2025-10-08 20:33:53] -rwx------. 1 boinc boinc     36292 Oct  8 11:54 runpilot2-wrapper.sh
[2025-10-08 20:33:53] -rw-r--r--. 1 boinc boinc       100 Oct  8 16:15 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-08 20:33:53] -rwxr-xr-x. 1 boinc boinc      7986 Oct  8 16:15 run_atlas
[2025-10-08 20:33:53] -rw-r--r--. 1 boinc boinc       105 Oct  8 16:15 job.xml
[2025-10-08 20:33:53] -rw-r--r--. 1 boinc boinc      6390 Oct  8 16:15 init_data.xml
[2025-10-08 20:33:53] -rw-r--r--. 2 boinc boinc 220495011 Oct  8 16:15 EVNT.46676267._000151.pool.root.1
[2025-10-08 20:33:53] -rw-r--r--. 2 boinc boinc     15120 Oct  8 16:15 start_atlas.sh
[2025-10-08 20:33:53] drwxrwx--x. 2 boinc boinc        68 Oct  8 16:15 shared
[2025-10-08 20:33:53] -rw-r--r--. 2 boinc boinc    569678 Oct  8 16:15 input.tar.gz
[2025-10-08 20:33:53] -rw-r--r--. 1 boinc boinc         0 Oct  8 16:15 boinc_lockfile
[2025-10-08 20:33:53] -rw-r--r--. 1 boinc boinc      2548 Oct  8 16:16 pandaJob.out
[2025-10-08 20:33:53] -rw-------. 1 boinc boinc    979287 Oct  8 16:19 agis_schedconf.cvmfs.json
[2025-10-08 20:33:53] drwx------. 5 boinc boinc      4096 Oct  8 16:19 pilot3
[2025-10-08 20:33:53] -rw-------. 1 boinc boinc 199559269 Oct  8 20:29 HITS.46676269._003765.pool.root.1
[2025-10-08 20:33:53] -rw-r--r--. 1 boinc boinc       531 Oct  8 20:30 boinc_task_state.xml
[2025-10-08 20:33:53] -rw-------. 1 boinc boinc      1016 Oct  8 20:30 memory_monitor_summary.json
[2025-10-08 20:33:53] -rw-------. 1 boinc boinc   1560401 Oct  8 20:31 agis_ddmendpoints.agis.ALL.json
[2025-10-08 20:33:53] -rw-------. 1 boinc boinc    461568 Oct  8 20:31 log.46676269._003765.job.log.tgz.1
[2025-10-08 20:33:53] -rw-------. 1 boinc boinc      7779 Oct  8 20:32 heartbeat.json
[2025-10-08 20:33:53] -rw-------. 1 boinc boinc        95 Oct  8 20:33 pilot_heartbeat.json
[2025-10-08 20:33:53] -rw-r--r--. 1 boinc boinc      8192 Oct  8 20:33 boinc_mmap_file
[2025-10-08 20:33:53] -rw-r--r--. 1 boinc boinc        28 Oct  8 20:33 wrapper_checkpoint.txt
[2025-10-08 20:33:53] -rw-------. 1 boinc boinc      4883 Oct  8 20:33 pilotlog.txt
[2025-10-08 20:33:53] -rw-------. 1 boinc boinc   2027248 Oct  8 20:33 log.46676269._003765.job.log.1
[2025-10-08 20:33:53] -rw-------. 1 boinc boinc       357 Oct  8 20:33 output.list
[2025-10-08 20:33:53] -rw-r--r--. 1 boinc boinc       620 Oct  8 20:33 runtime_log
[2025-10-08 20:33:53] -rw-------. 1 boinc boinc   2508800 Oct  8 20:33 result.tar.gz
[2025-10-08 20:33:53] -rw-r--r--. 1 boinc boinc      8703 Oct  8 20:33 runtime_log.err
[2025-10-08 20:33:53] -rw-------. 1 boinc boinc       657 Oct  8 20:33 9CZKDm22fQ8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmwpXNDmqmoyJo.diag
[2025-10-08 20:33:53] -rw-r--r--. 1 boinc boinc     20806 Oct  8 20:33 stderr.txt
[2025-10-08 20:33:53] HITS file was successfully produced:
[2025-10-08 20:33:53] -rw-------. 1 boinc boinc 199559269 Oct  8 20:29 shared/HITS.pool.root.1
[2025-10-08 20:33:53]  *** Contents of shared directory: ***
[2025-10-08 20:33:53] total 413240
[2025-10-08 20:33:53] -rw-r--r--. 2 boinc boinc 220495011 Oct  8 16:15 ATLAS.root_0
[2025-10-08 20:33:53] -rw-r--r--. 2 boinc boinc     15120 Oct  8 16:15 start_atlas.sh
[2025-10-08 20:33:53] -rw-r--r--. 2 boinc boinc    569678 Oct  8 16:15 input.tar.gz
[2025-10-08 20:33:53] -rw-------. 1 boinc boinc 199559269 Oct  8 20:29 HITS.pool.root.1
[2025-10-08 20:33:53] -rw-------. 1 boinc boinc   2508800 Oct  8 20:33 result.tar.gz
20:33:55 (30703): run_atlas exited; CPU time 56274.121447
20:33:55 (30703): called boinc_finish(0)

</stderr_txt>
]]>

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