Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
12:14:43 (26809): wrapper (7.7.26015): starting
12:14:43 (26809): wrapper: running run_atlas (--nthreads 8)
[2025-10-08 12:14:43] Arguments: --nthreads 8
[2025-10-08 12:14:43] Threads: 8
[2025-10-08 12:14:43] Checking for CVMFS
[2025-10-08 12:14:43] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-08 12:14:44] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-08 12:14:44] Running cvmfs_config stat atlas.cern.ch
[2025-10-08 12:14:45] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-08 12:14:45] 2.11.2.0 13026 214641 137620 151468 0 11 23706802 25165824 4053 130560 0 118166315 99.887 63501039 3622 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-10-08 12:14:45] CVMFS is ok
[2025-10-08 12:14:45] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-08 12:14:45] Checking for apptainer binary...
[2025-10-08 12:14:45] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-08 12:14:45] Running /usr/bin/apptainer --version
[2025-10-08 12:14:45] apptainer version 1.3.2-1.el7
[2025-10-08 12:14:45] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-08 12:14:47] cg-vwn329.simple-grid.lan
[2025-10-08 12:14:47] apptainer works
[2025-10-08 12:14:47] Set ATHENA_PROC_NUMBER=8
[2025-10-08 12:14:47] Set ATHENA_CORE_NUMBER=8
[2025-10-08 12:14:47] Starting ATLAS job with PandaID=6835977131
[2025-10-08 12:14:47] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-08 16:15:52]  *** The last 200 lines of the pilot log: ***
[2025-10-08 16:15:52] 2025-10-08 14:15:08,709 | INFO     | time since job start (14391s) is within the limit (172800.0s)
[2025-10-08 16:15:52] 2025-10-08 14:15:09,537 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-08 16:15:52] 2025-10-08 14:15:09,538 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-10-08 16:15:52] 2025-10-08 14:15:09,540 | INFO     | using path: /var/lib/boinc/slots/5/PanDA_Pilot-6835977131/memory_monitor_summary.json (trf name=prmon)
[2025-10-08 16:15:52] 2025-10-08 14:15:09,541 | INFO     | extracted standard info from prmon json
[2025-10-08 16:15:52] 2025-10-08 14:15:09,541 | INFO     | extracted standard memory fields from prmon json
[2025-10-08 16:15:52] 2025-10-08 14:15:09,541 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-08 16:15:52] 2025-10-08 14:15:09,541 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-08 16:15:52] 2025-10-08 14:15:09,547 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-08 16:15:52] 2025-10-08 14:15:09,552 | INFO     | fitting pss+swap vs Time
[2025-10-08 16:15:52] 2025-10-08 14:15:09,553 | INFO     | sum of square deviations: 3972995422.5
[2025-10-08 16:15:52] 2025-10-08 14:15:09,555 | INFO     | sum of deviations: -32210994794.99999
[2025-10-08 16:15:52] 2025-10-08 14:15:09,555 | INFO     | mean x: 1759925670.5
[2025-10-08 16:15:52] 2025-10-08 14:15:09,555 | INFO     | mean y: 2531908.0512820515
[2025-10-08 16:15:52] 2025-10-08 14:15:09,555 | INFO     | -- intersect: 14271100225.804577
[2025-10-08 16:15:52] 2025-10-08 14:15:09,555 | INFO     | intersect: 14271100225.804577
[2025-10-08 16:15:52] 2025-10-08 14:15:09,556 | INFO     | chi2: 1.7671972600511374
[2025-10-08 16:15:52] 2025-10-08 14:15:09,556 | INFO     | sum of square deviations: 3723716330.0
[2025-10-08 16:15:52] 2025-10-08 14:15:09,558 | INFO     | sum of deviations: -31186433487.999992
[2025-10-08 16:15:52] 2025-10-08 14:15:09,558 | INFO     | mean x: 1759925518.0
[2025-10-08 16:15:52] 2025-10-08 14:15:09,558 | INFO     | mean y: 2532534.9126637555
[2025-10-08 16:15:52] 2025-10-08 14:15:09,559 | INFO     | -- intersect: 14742054895.613253
[2025-10-08 16:15:52] 2025-10-08 14:15:09,559 | INFO     | intersect: 14742054895.613253
[2025-10-08 16:15:52] 2025-10-08 14:15:09,559 | INFO     | chi2: 1.764981319061225
[2025-10-08 16:15:52] 2025-10-08 14:15:09,559 | INFO     | current chi2=1.764981319061225 (change=0.12539296206516243 %)
[2025-10-08 16:15:52] 2025-10-08 14:15:09,559 | INFO     | right removable region: 228
[2025-10-08 16:15:52] 2025-10-08 14:15:09,560 | INFO     | sum of square deviations: 3723716330.0
[2025-10-08 16:15:52] 2025-10-08 14:15:09,561 | INFO     | sum of deviations: -68668431390.0
[2025-10-08 16:15:52] 2025-10-08 14:15:09,562 | INFO     | mean x: 1759925823.0
[2025-10-08 16:15:52] 2025-10-08 14:15:09,562 | INFO     | mean y: 2553994.847161572
[2025-10-08 16:15:52] 2025-10-08 14:15:09,562 | INFO     | -- intersect: 32457052382.527725
[2025-10-08 16:15:52] 2025-10-08 14:15:09,562 | INFO     | intersect: 32457052382.527725
[2025-10-08 16:15:52] 2025-10-08 14:15:09,562 | INFO     | chi2: 0.24828223081722908
[2025-10-08 16:15:52] 2025-10-08 14:15:09,567 | INFO     | current chi2=0.24828223081722908 (change=85.95050838806503 %)
[2025-10-08 16:15:52] 2025-10-08 14:15:09,567 | INFO     | sum of square deviations: 3485088600.0
[2025-10-08 16:15:52] 2025-10-08 14:15:09,569 | INFO     | sum of deviations: -63365055460.999985
[2025-10-08 16:15:52] 2025-10-08 14:15:09,569 | INFO     | mean x: 1759925975.5
[2025-10-08 16:15:52] 2025-10-08 14:15:09,569 | INFO     | mean y: 2550600.7053571427
[2025-10-08 16:15:52] 2025-10-08 14:15:09,570 | INFO     | -- intersect: 32001107838.191944
[2025-10-08 16:15:52] 2025-10-08 14:15:09,570 | INFO     | intersect: 32001107838.191944
[2025-10-08 16:15:52] 2025-10-08 14:15:09,570 | INFO     | chi2: 0.2475789922592159
[2025-10-08 16:15:52] 2025-10-08 14:15:09,570 | INFO     | current chi2=0.2475789922592159 (change=0.2832415979582806 %)
[2025-10-08 16:15:52] 2025-10-08 14:15:09,570 | INFO     | left removable region: 20
[2025-10-08 16:15:52] 2025-10-08 14:15:09,571 | INFO     | sum of square deviations: 2790348132.0
[2025-10-08 16:15:52] 2025-10-08 14:15:09,572 | INFO     | sum of deviations: -48357736153.000015
[2025-10-08 16:15:52] 2025-10-08 14:15:09,572 | INFO     | mean x: 1759926097.5
[2025-10-08 16:15:52] 2025-10-08 14:15:09,572 | INFO     | mean y: 2542448.826923077
[2025-10-08 16:15:52] 2025-10-08 14:15:09,573 | INFO     | -- intersect: 30502694345.8892
[2025-10-08 16:15:52] 2025-10-08 14:15:09,573 | INFO     | intersect: 30502694345.8892
[2025-10-08 16:15:52] 2025-10-08 14:15:09,573 | INFO     | chi2: 0.2326566988434697
[2025-10-08 16:15:52] 2025-10-08 14:15:09,573 | INFO     | -- intersect: 30502694345.8892
[2025-10-08 16:15:52] 2025-10-08 14:15:09,573 | INFO     | current memory leak: -17.33 B/s (using 208 data points, chi2=0.23)
[2025-10-08 16:15:52] 2025-10-08 14:15:09,574 | INFO     | could have reported an average CPU frequency of 1999 MHz (11 samples)
[2025-10-08 16:15:52] 2025-10-08 14:15:09,574 | INFO     | ..............................
[2025-10-08 16:15:52] 2025-10-08 14:15:09,574 | INFO     | . Timing measurements:
[2025-10-08 16:15:52] 2025-10-08 14:15:09,574 | INFO     | . get job = 0 s
[2025-10-08 16:15:52] 2025-10-08 14:15:09,575 | INFO     | . initial setup = 2 s
[2025-10-08 16:15:52] 2025-10-08 14:15:09,575 | INFO     | . payload setup = 10 s
[2025-10-08 16:15:52] 2025-10-08 14:15:09,575 | INFO     | . stage-in = 0 s
[2025-10-08 16:15:52] 2025-10-08 14:15:09,575 | INFO     | . payload execution = 14271 s
[2025-10-08 16:15:52] 2025-10-08 14:15:09,575 | INFO     | . stage-out = 3 s
[2025-10-08 16:15:52] 2025-10-08 14:15:09,575 | INFO     | . log creation = 0 s
[2025-10-08 16:15:52] 2025-10-08 14:15:09,575 | INFO     | ..............................
[2025-10-08 16:15:52] 2025-10-08 14:15:09,738 | INFO     | 
[2025-10-08 16:15:52] 2025-10-08 14:15:09,738 | INFO     | job summary report
[2025-10-08 16:15:52] 2025-10-08 14:15:09,738 | INFO     | --------------------------------------------------
[2025-10-08 16:15:52] 2025-10-08 14:15:09,738 | INFO     | PanDA job id: 6835977131
[2025-10-08 16:15:52] 2025-10-08 14:15:09,738 | INFO     | task id: 46676269
[2025-10-08 16:15:52] 2025-10-08 14:15:09,738 | INFO     | errors: (none)
[2025-10-08 16:15:52] 2025-10-08 14:15:09,739 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-08 16:15:52] 2025-10-08 14:15:09,739 | INFO     | pilot state: finished 
[2025-10-08 16:15:52] 2025-10-08 14:15:09,739 | INFO     | transexitcode: 0
[2025-10-08 16:15:52] 2025-10-08 14:15:09,739 | INFO     | exeerrorcode: 0
[2025-10-08 16:15:52] 2025-10-08 14:15:09,739 | INFO     | exeerrordiag: 
[2025-10-08 16:15:52] 2025-10-08 14:15:09,739 | INFO     | exitcode: 0
[2025-10-08 16:15:52] 2025-10-08 14:15:09,739 | INFO     | exitmsg: OK
[2025-10-08 16:15:52] 2025-10-08 14:15:09,739 | INFO     | cpuconsumptiontime: 53826 s
[2025-10-08 16:15:52] 2025-10-08 14:15:09,739 | INFO     | nevents: 400
[2025-10-08 16:15:52] 2025-10-08 14:15:09,739 | INFO     | neventsw: 0
[2025-10-08 16:15:52] 2025-10-08 14:15:09,739 | INFO     | pid: 4932
[2025-10-08 16:15:52] 2025-10-08 14:15:09,739 | INFO     | pgrp: 4932
[2025-10-08 16:15:52] 2025-10-08 14:15:09,739 | INFO     | corecount: 8
[2025-10-08 16:15:52] 2025-10-08 14:15:09,740 | INFO     | event service: False
[2025-10-08 16:15:52] 2025-10-08 14:15:09,740 | INFO     | sizes: {0: 2348024, 1: 2348880, 8: 2349142, 12: 2349170, 14285: 2379398, 14290: 2388580, 14373: 2388718}
[2025-10-08 16:15:52] 2025-10-08 14:15:09,740 | INFO     | --------------------------------------------------
[2025-10-08 16:15:52] 2025-10-08 14:15:09,740 | INFO     | 
[2025-10-08 16:15:52] 2025-10-08 14:15:09,740 | INFO     | executing command: ls -lF /var/lib/boinc/slots/5
[2025-10-08 16:15:52] 2025-10-08 14:15:09,895 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-08 16:15:52] 2025-10-08 14:15:09,895 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-08 16:15:52] 2025-10-08 14:15:09,896 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-08 16:15:52] 2025-10-08 14:15:09,896 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-08 16:15:52] 2025-10-08 14:15:09,896 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-08 16:15:52] 2025-10-08 14:15:09,896 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-08 16:15:52] 2025-10-08 14:15:09,896 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-08 16:15:52] 2025-10-08 14:15:09,896 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-08 16:15:52] 2025-10-08 14:15:09,896 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-08 16:15:52] 2025-10-08 14:15:09,896 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-08 16:15:52] 2025-10-08 14:15:09,896 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-08 16:15:52] 2025-10-08 14:15:09,896 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-08 16:15:52] 2025-10-08 14:15:09,896 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-08 16:15:52] 2025-10-08 14:15:09,897 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-08 16:15:52] 2025-10-08 14:15:09,897 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-08 16:15:52] 2025-10-08 14:15:09,897 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-08 16:15:52] 2025-10-08 14:15:09,897 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-08 16:15:52] 2025-10-08 14:15:09,897 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-08 16:15:52] 2025-10-08 14:15:09,897 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-08 16:15:52] 2025-10-08 14:15:09,897 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-08 16:15:52] 2025-10-08 14:15:09,897 | INFO     | job 6835977131 has completed (purged errors)
[2025-10-08 16:15:52] 2025-10-08 14:15:09,897 | INFO     | overall cleanup function is called
[2025-10-08 16:15:52] 2025-10-08 14:15:10,907 | INFO     | --- collectZombieJob: --- 10, [4932]
[2025-10-08 16:15:52] 2025-10-08 14:15:10,907 | INFO     | zombie collector waiting for pid 4932
[2025-10-08 16:15:52] 2025-10-08 14:15:10,907 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-08 16:15:52] 2025-10-08 14:15:10,907 | INFO     | collected zombie processes
[2025-10-08 16:15:52] 2025-10-08 14:15:10,907 | INFO     | will attempt to kill all subprocesses of pid=4932
[2025-10-08 16:15:52] 2025-10-08 14:15:11,029 | INFO     | process IDs to be killed: [4932] (in reverse order)
[2025-10-08 16:15:52] 2025-10-08 14:15:11,962 | WARNING  | found no corresponding commands to process id(s)
[2025-10-08 16:15:52] 2025-10-08 14:15:11,963 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-08 16:15:52] 2025-10-08 14:15:11,971 | INFO     | did not find any defunct processes belonging to 4932
[2025-10-08 16:15:52] 2025-10-08 14:15:11,975 | INFO     | did not find any defunct processes belonging to 4932
[2025-10-08 16:15:52] 2025-10-08 14:15:11,975 | INFO     | ready for new job
[2025-10-08 16:15:52] 2025-10-08 14:15:11,975 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-08 16:15:52] 2025-10-08 14:15:11,977 | INFO     | ***************************************
[2025-10-08 16:15:52] 2025-10-08 14:15:11,977 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-08 16:15:52] 2025-10-08 14:15:11,977 | INFO     | ***************************************
[2025-10-08 16:15:52] 2025-10-08 14:15:11,978 | INFO     | 
[2025-10-08 16:15:52] 2025-10-08 14:15:11,978 | INFO     | pilot is running in a VM
[2025-10-08 16:15:52] 2025-10-08 14:15:11,978 | INFO     | architecture information:
[2025-10-08 16:15:52] 2025-10-08 14:15:11,985 | INFO     | executing command: cat /etc/os-release
[2025-10-08 16:15:52] 2025-10-08 14:15:12,241 | INFO     | cat /etc/os-release:
[2025-10-08 16:15:52] NAME="CentOS Linux"
[2025-10-08 16:15:52] VERSION="7 (Core)"
[2025-10-08 16:15:52] ID="centos"
[2025-10-08 16:15:52] ID_LIKE="rhel fedora"
[2025-10-08 16:15:52] VERSION_ID="7"
[2025-10-08 16:15:52] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-08 16:15:52] ANSI_COLOR="0;31"
[2025-10-08 16:15:52] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-08 16:15:52] HOME_URL="https://www.centos.org/"
[2025-10-08 16:15:52] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-08 16:15:52] 
[2025-10-08 16:15:52] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-08 16:15:52] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-08 16:15:52] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-08 16:15:52] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-08 16:15:52] 
[2025-10-08 16:15:52] 2025-10-08 14:15:12,242 | INFO     | ***************************************
[2025-10-08 16:15:52] 2025-10-08 14:15:12,744 | INFO     | executing command: df -mP /var/lib/boinc/slots/5
[2025-10-08 16:15:52] 2025-10-08 14:15:12,972 | INFO     | sufficient remaining disk space (496137928704 B)
[2025-10-08 16:15:52] 2025-10-08 14:15:12,973 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-08 16:15:52] 2025-10-08 14:15:12,973 | INFO     | current server update state: UPDATING_FINAL
[2025-10-08 16:15:52] 2025-10-08 14:15:12,973 | INFO     | update_server=False
[2025-10-08 16:15:52] 2025-10-08 14:15:12,973 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-08 16:15:52] 2025-10-08 14:15:12,976 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-08 16:15:52] 2025-10-08 14:15:13,255 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-08 16:15:52] 2025-10-08 14:15:13,255 | INFO     | aborting loop
[2025-10-08 16:15:52] 2025-10-08 14:15:13,682 | INFO     | all payload control threads have been joined
[2025-10-08 16:15:52] 2025-10-08 14:15:13,682 | INFO     | all data control threads have been joined
[2025-10-08 16:15:52] 2025-10-08 14:15:13,934 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-08 16:15:52] 2025-10-08 14:15:13,979 | INFO     | [job] retrieve thread has finished
[2025-10-08 16:15:52] 2025-10-08 14:15:14,022 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-08 16:15:52] 2025-10-08 14:15:14,097 | INFO     | all job control threads have been joined
[2025-10-08 16:15:52] 2025-10-08 14:15:14,206 | INFO     | [payload] validate_pre thread has finished
[2025-10-08 16:15:52] 2025-10-08 14:15:14,261 | INFO     | [job] job monitor thread has finished
[2025-10-08 16:15:52] 2025-10-08 14:15:14,475 | INFO     | [payload] execute_payloads thread has finished
[2025-10-08 16:15:52] 2025-10-08 14:15:14,493 | INFO     | [payload] validate_post thread has finished
[2025-10-08 16:15:52] 2025-10-08 14:15:14,656 | INFO     | [job] create_data_payload thread has finished
[2025-10-08 16:15:52] 2025-10-08 14:15:14,688 | INFO     | [payload] control thread has finished
[2025-10-08 16:15:52] 2025-10-08 14:15:14,688 | INFO     | [data] control thread has finished
[2025-10-08 16:15:52] 2025-10-08 14:15:14,750 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-08 16:15:52] 2025-10-08 14:15:14,871 | INFO     | [payload] failed_post thread has finished
[2025-10-08 16:15:52] 2025-10-08 14:15:14,982 | INFO     | [data] copytool_out thread has finished
[2025-10-08 16:15:52] 2025-10-08 14:15:15,104 | INFO     | [job] control thread has finished
[2025-10-08 16:15:52] 2025-10-08 14:15:15,120 | INFO     | [job] validate thread has finished
[2025-10-08 16:15:52] 2025-10-08 14:15:15,123 | INFO     | [data] copytool_in thread has finished
[2025-10-08 16:15:52] 2025-10-08 14:15:15,756 | INFO     | [job] queue monitor thread has finished
[2025-10-08 16:15:52] 2025-10-08 14:15:17,943 | INFO     | [data] queue_monitor thread has finished
[2025-10-08 16:15:52] 2025-10-08 14:15:25,080 [wrapper] supervise_pilot (15 min periods counter: 17)
[2025-10-08 16:15:52] 2025-10-08 14:15:41,928 | INFO     | PID=30846 has CPU usage=1.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-08 16:15:52] 2025-10-08 14:15:41,929 | INFO     | .. there are 9 such processes running
[2025-10-08 16:15:52] 2025-10-08 14:15:41,929 | INFO     | found 0 job(s) in 20 queues
[2025-10-08 16:15:52] 2025-10-08 14:15:41,929 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-08 16:15:52] 2025-10-08 14:15:41,929 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-08 16:15:52] 2025-10-08 14:15:42,347 | INFO     | [monitor] cgroup control has ended
[2025-10-08 16:15:52] 2025-10-08 14:15:42,542 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140684287633216)>', '<ExcThread(monitor, started 140683818014464)>']
[2025-10-08 16:15:52] 2025-10-08 14:15:42,935 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-08 16:15:52] 2025-10-08 14:15:42,935 | INFO     | [monitor] control thread has ended
[2025-10-08 16:15:52] 2025-10-08 14:15:47,568 | INFO     | all workflow threads have been joined
[2025-10-08 16:15:52] 2025-10-08 14:15:47,568 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-08 16:15:52] 2025-10-08 14:15:47,568 | INFO     | traces error code: 0
[2025-10-08 16:15:52] 2025-10-08 14:15:47,568 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-08 16:15:52] 2025-10-08 14:15:47,871 [wrapper] ==== pilot stdout END ====
[2025-10-08 16:15:52] 2025-10-08 14:15:47,935 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-08 16:15:52] 2025-10-08 14:15:48,034 [wrapper] pilotpid: 30846
[2025-10-08 16:15:52] 2025-10-08 14:15:48,135 [wrapper] Pilot exit status: 0
[2025-10-08 16:15:52] 2025-10-08 14:15:48,618 [wrapper] pandaids: 6835977131
[2025-10-08 16:15:52] 2025-10-08 14:15:49,617 [wrapper] cleanup supervisor_pilot 30643 30847
[2025-10-08 16:15:52] 2025-10-08 14:15:49,751 [wrapper] Test setup, not cleaning
[2025-10-08 16:15:52] 2025-10-08 14:15:49,850 [wrapper] apfmon messages muted
[2025-10-08 16:15:52] 2025-10-08 14:15:49,906 [wrapper] ==== wrapper stdout END ====
[2025-10-08 16:15:52] 2025-10-08 14:15:49,999 [wrapper] ==== wrapper stderr END ====
[2025-10-08 16:15:52]  *** Error codes and diagnostics ***
[2025-10-08 16:15:52]     "exeErrorCode": 0,
[2025-10-08 16:15:52]     "exeErrorDiag": "",
[2025-10-08 16:15:52]     "pilotErrorCode": 0,
[2025-10-08 16:15:52]     "pilotErrorDiag": "",
[2025-10-08 16:15:52]  *** Listing of results directory ***
[2025-10-08 16:15:52] total 409492
[2025-10-08 16:15:52] -rw-r--r--. 1 boinc boinc    557409 Oct  8 11:48 pilot3.tar.gz
[2025-10-08 16:15:52] -rwx------. 1 boinc boinc     36292 Oct  8 11:53 runpilot2-wrapper.sh
[2025-10-08 16:15:52] -rw-r--r--. 1 boinc boinc      5112 Oct  8 11:53 queuedata.json
[2025-10-08 16:15:52] -rw-r--r--. 1 boinc boinc       100 Oct  8 12:14 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-08 16:15:52] -rwxr-xr-x. 1 boinc boinc      7986 Oct  8 12:14 run_atlas
[2025-10-08 16:15:52] -rw-r--r--. 1 boinc boinc       105 Oct  8 12:14 job.xml
[2025-10-08 16:15:52] -rw-r--r--. 2 boinc boinc 220617204 Oct  8 12:14 EVNT.46676267._000137.pool.root.1
[2025-10-08 16:15:52] -rw-r--r--. 2 boinc boinc     15120 Oct  8 12:14 start_atlas.sh
[2025-10-08 16:15:52] drwxrwx--x. 2 boinc boinc        68 Oct  8 12:14 shared
[2025-10-08 16:15:52] -rw-r--r--. 2 boinc boinc    569680 Oct  8 12:14 input.tar.gz
[2025-10-08 16:15:52] -rw-r--r--. 1 boinc boinc      6390 Oct  8 12:14 init_data.xml
[2025-10-08 16:15:52] -rw-r--r--. 1 boinc boinc         0 Oct  8 12:14 boinc_lockfile
[2025-10-08 16:15:52] -rw-r--r--. 1 boinc boinc      2548 Oct  8 12:14 pandaJob.out
[2025-10-08 16:15:52] -rw-------. 1 boinc boinc    979801 Oct  8 12:15 agis_schedconf.cvmfs.json
[2025-10-08 16:15:52] drwx------. 5 boinc boinc      4096 Oct  8 12:15 pilot3
[2025-10-08 16:15:52] -rw-------. 1 boinc boinc 190000621 Oct  8 16:12 HITS.46676269._003420.pool.root.1
[2025-10-08 16:15:52] -rw-r--r--. 1 boinc boinc       531 Oct  8 16:13 boinc_task_state.xml
[2025-10-08 16:15:52] -rw-------. 1 boinc boinc      1020 Oct  8 16:13 memory_monitor_summary.json
[2025-10-08 16:15:52] -rw-------. 1 boinc boinc   1560401 Oct  8 16:13 agis_ddmendpoints.agis.ALL.json
[2025-10-08 16:15:52] -rw-------. 1 boinc boinc    461234 Oct  8 16:13 log.46676269._003420.job.log.tgz.1
[2025-10-08 16:15:52] -rw-------. 1 boinc boinc        95 Oct  8 16:15 pilot_heartbeat.json
[2025-10-08 16:15:52] -rw-------. 1 boinc boinc      7783 Oct  8 16:15 heartbeat.json
[2025-10-08 16:15:52] -rw-r--r--. 1 boinc boinc        28 Oct  8 16:15 wrapper_checkpoint.txt
[2025-10-08 16:15:52] -rw-r--r--. 1 boinc boinc      8192 Oct  8 16:15 boinc_mmap_file
[2025-10-08 16:15:52] -rw-------. 1 boinc boinc      4884 Oct  8 16:15 pilotlog.txt
[2025-10-08 16:15:52] -rw-------. 1 boinc boinc   1943305 Oct  8 16:15 log.46676269._003420.job.log.1
[2025-10-08 16:15:52] -rw-------. 1 boinc boinc       357 Oct  8 16:15 output.list
[2025-10-08 16:15:52] -rw-r--r--. 1 boinc boinc       620 Oct  8 16:15 runtime_log
[2025-10-08 16:15:52] -rw-------. 1 boinc boinc   2426880 Oct  8 16:15 result.tar.gz
[2025-10-08 16:15:52] -rw-r--r--. 1 boinc boinc      8703 Oct  8 16:15 runtime_log.err
[2025-10-08 16:15:52] -rw-------. 1 boinc boinc       657 Oct  8 16:15 BWXLDmN2fQ8n9Rq4apOajLDm4fhM0noT9bVof3QYDmEJMMDmRzwVXn.diag
[2025-10-08 16:15:52] -rw-r--r--. 1 boinc boinc     20717 Oct  8 16:15 stderr.txt
[2025-10-08 16:15:52] HITS file was successfully produced:
[2025-10-08 16:15:52] -rw-------. 1 boinc boinc 190000621 Oct  8 16:12 shared/HITS.pool.root.1
[2025-10-08 16:15:52]  *** Contents of shared directory: ***
[2025-10-08 16:15:52] total 403944
[2025-10-08 16:15:52] -rw-r--r--. 2 boinc boinc 220617204 Oct  8 12:14 ATLAS.root_0
[2025-10-08 16:15:52] -rw-r--r--. 2 boinc boinc     15120 Oct  8 12:14 start_atlas.sh
[2025-10-08 16:15:52] -rw-r--r--. 2 boinc boinc    569680 Oct  8 12:14 input.tar.gz
[2025-10-08 16:15:52] -rw-------. 1 boinc boinc 190000621 Oct  8 16:12 HITS.pool.root.1
[2025-10-08 16:15:52] -rw-------. 1 boinc boinc   2426880 Oct  8 16:15 result.tar.gz
16:15:54 (26809): run_atlas exited; CPU time 54001.822640
16:15:54 (26809): called boinc_finish(0)

</stderr_txt>
]]>

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