Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
15:58:24 (19001): wrapper (7.7.26015): starting
15:58:24 (19001): wrapper: running run_atlas (--nthreads 8)
[2025-10-08 15:58:24] Arguments: --nthreads 8
[2025-10-08 15:58:24] Threads: 8
[2025-10-08 15:58:24] Checking for CVMFS
[2025-10-08 15:58:25] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-08 15:58:26] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-08 15:58:26] Running cvmfs_config stat atlas.cern.ch
[2025-10-08 15:58:27] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-08 15:58:27] 2.11.2.0 14372 214726 135300 151473 0 60 14560167 25165825 4632 130560 0 117328547 99.886 66510019 3333 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-10-08 15:58:27] CVMFS is ok
[2025-10-08 15:58:27] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-08 15:58:27] Checking for apptainer binary...
[2025-10-08 15:58:27] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-08 15:58:27] Running /usr/bin/apptainer --version
[2025-10-08 15:58:27] apptainer version 1.3.2-1.el7
[2025-10-08 15:58:27] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-08 15:58:45] cg-vwn440.simple-grid.lan
[2025-10-08 15:58:45] apptainer works
[2025-10-08 15:58:45] Set ATHENA_PROC_NUMBER=8
[2025-10-08 15:58:45] Set ATHENA_CORE_NUMBER=8
[2025-10-08 15:58:45] Starting ATLAS job with PandaID=6835902632
[2025-10-08 15:58:45] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/31 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-08 19:47:55]  *** The last 200 lines of the pilot log: ***
[2025-10-08 19:47:55] 2025-10-08 17:47:04,610 | INFO     | intersect: -33535454206.073452
[2025-10-08 19:47:55] 2025-10-08 17:47:04,611 | INFO     | chi2: 7.102473827522286
[2025-10-08 19:47:55] 2025-10-08 17:47:04,611 | INFO     | sum of square deviations: 2830787960.0
[2025-10-08 19:47:55] 2025-10-08 17:47:04,613 | INFO     | sum of deviations: 70814152566.99997
[2025-10-08 19:47:55] 2025-10-08 17:47:04,613 | INFO     | mean x: 1759938954.0
[2025-10-08 19:47:55] 2025-10-08 17:47:04,613 | INFO     | mean y: 2451297.6315789474
[2025-10-08 19:47:55] 2025-10-08 17:47:04,614 | INFO     | -- intersect: -44023659932.95397
[2025-10-08 19:47:55] 2025-10-08 17:47:04,614 | INFO     | intersect: -44023659932.95397
[2025-10-08 19:47:55] 2025-10-08 17:47:04,614 | INFO     | chi2: 6.40510961527967
[2025-10-08 19:47:55] 2025-10-08 17:47:04,614 | INFO     | current chi2=6.40510961527967 (change=9.818610095264411 %)
[2025-10-08 19:47:55] 2025-10-08 17:47:04,614 | INFO     | right removable region: 208
[2025-10-08 19:47:55] 2025-10-08 17:47:04,615 | INFO     | sum of square deviations: 2830787960.0
[2025-10-08 19:47:55] 2025-10-08 17:47:04,617 | INFO     | sum of deviations: -15849113329.999996
[2025-10-08 19:47:55] 2025-10-08 17:47:04,617 | INFO     | mean x: 1759939259.0
[2025-10-08 19:47:55] 2025-10-08 17:47:04,617 | INFO     | mean y: 2496042.6555023924
[2025-10-08 19:47:55] 2025-10-08 17:47:04,617 | INFO     | -- intersect: 9856104707.080942
[2025-10-08 19:47:55] 2025-10-08 17:47:04,617 | INFO     | intersect: 9856104707.080942
[2025-10-08 19:47:55] 2025-10-08 17:47:04,617 | INFO     | chi2: 2.245562256838694
[2025-10-08 19:47:55] 2025-10-08 17:47:04,618 | INFO     | current chi2=2.245562256838694 (change=68.38337864566178 %)
[2025-10-08 19:47:55] 2025-10-08 17:47:04,618 | INFO     | sum of square deviations: 2632440055.0
[2025-10-08 19:47:55] 2025-10-08 17:47:04,620 | INFO     | sum of deviations: -49972493962.5
[2025-10-08 19:47:55] 2025-10-08 17:47:04,620 | INFO     | mean x: 1759939411.5
[2025-10-08 19:47:55] 2025-10-08 17:47:04,620 | INFO     | mean y: 2522073.7107843137
[2025-10-08 19:47:55] 2025-10-08 17:47:04,620 | INFO     | -- intersect: 33412043194.05005
[2025-10-08 19:47:55] 2025-10-08 17:47:04,620 | INFO     | intersect: 33412043194.05005
[2025-10-08 19:47:55] 2025-10-08 17:47:04,621 | INFO     | chi2: 0.902438320268492
[2025-10-08 19:47:55] 2025-10-08 17:47:04,621 | INFO     | current chi2=0.902438320268492 (change=59.81236692413302 %)
[2025-10-08 19:47:55] 2025-10-08 17:47:04,621 | INFO     | sum of square deviations: 2443580700.0
[2025-10-08 19:47:55] 2025-10-08 17:47:04,623 | INFO     | sum of deviations: -50984666322.0
[2025-10-08 19:47:55] 2025-10-08 17:47:04,623 | INFO     | mean x: 1759939564.0
[2025-10-08 19:47:55] 2025-10-08 17:47:04,623 | INFO     | mean y: 2522846.8743718592
[2025-10-08 19:47:55] 2025-10-08 17:47:04,623 | INFO     | -- intersect: 36723197313.41692
[2025-10-08 19:47:55] 2025-10-08 17:47:04,624 | INFO     | intersect: 36723197313.41692
[2025-10-08 19:47:55] 2025-10-08 17:47:04,624 | INFO     | chi2: 0.8754397084714801
[2025-10-08 19:47:55] 2025-10-08 17:47:04,624 | INFO     | current chi2=0.8754397084714801 (change=2.9917403982777815 %)
[2025-10-08 19:47:55] 2025-10-08 17:47:04,624 | INFO     | left removable region: 30
[2025-10-08 19:47:55] 2025-10-08 17:47:04,625 | INFO     | sum of square deviations: 1748737904.5
[2025-10-08 19:47:55] 2025-10-08 17:47:04,626 | INFO     | sum of deviations: -25995057280.0
[2025-10-08 19:47:55] 2025-10-08 17:47:04,626 | INFO     | mean x: 1759939838.5
[2025-10-08 19:47:55] 2025-10-08 17:47:04,626 | INFO     | mean y: 2525260.9438202246
[2025-10-08 19:47:55] 2025-10-08 17:47:04,626 | INFO     | -- intersect: 26164099727.554493
[2025-10-08 19:47:55] 2025-10-08 17:47:04,627 | INFO     | intersect: 26164099727.554493
[2025-10-08 19:47:55] 2025-10-08 17:47:04,627 | INFO     | chi2: 0.0840858958605355
[2025-10-08 19:47:55] 2025-10-08 17:47:04,627 | INFO     | -- intersect: 26164099727.554493
[2025-10-08 19:47:55] 2025-10-08 17:47:04,627 | INFO     | current memory leak: -14.87 B/s (using 178 data points, chi2=0.08)
[2025-10-08 19:47:55] 2025-10-08 17:47:04,628 | INFO     | could have reported an average CPU frequency of 1999 MHz (10 samples)
[2025-10-08 19:47:55] 2025-10-08 17:47:04,628 | INFO     | ..............................
[2025-10-08 19:47:55] 2025-10-08 17:47:04,628 | INFO     | . Timing measurements:
[2025-10-08 19:47:55] 2025-10-08 17:47:04,629 | INFO     | . get job = 0 s
[2025-10-08 19:47:55] 2025-10-08 17:47:04,629 | INFO     | . initial setup = 6 s
[2025-10-08 19:47:55] 2025-10-08 17:47:04,629 | INFO     | . payload setup = 125 s
[2025-10-08 19:47:55] 2025-10-08 17:47:04,629 | INFO     | . stage-in = 0 s
[2025-10-08 19:47:55] 2025-10-08 17:47:04,629 | INFO     | . payload execution = 13147 s
[2025-10-08 19:47:55] 2025-10-08 17:47:04,629 | INFO     | . stage-out = 1 s
[2025-10-08 19:47:55] 2025-10-08 17:47:04,629 | INFO     | . log creation = 0 s
[2025-10-08 19:47:55] 2025-10-08 17:47:04,629 | INFO     | ..............................
[2025-10-08 19:47:55] 2025-10-08 17:47:04,767 | INFO     | 
[2025-10-08 19:47:55] 2025-10-08 17:47:04,767 | INFO     | job summary report
[2025-10-08 19:47:55] 2025-10-08 17:47:04,767 | INFO     | --------------------------------------------------
[2025-10-08 19:47:55] 2025-10-08 17:47:04,768 | INFO     | PanDA job id: 6835902632
[2025-10-08 19:47:55] 2025-10-08 17:47:04,768 | INFO     | task id: 46376905
[2025-10-08 19:47:55] 2025-10-08 17:47:04,768 | INFO     | errors: (none)
[2025-10-08 19:47:55] 2025-10-08 17:47:04,768 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-08 19:47:55] 2025-10-08 17:47:04,768 | INFO     | pilot state: finished 
[2025-10-08 19:47:55] 2025-10-08 17:47:04,768 | INFO     | transexitcode: 0
[2025-10-08 19:47:55] 2025-10-08 17:47:04,768 | INFO     | exeerrorcode: 0
[2025-10-08 19:47:55] 2025-10-08 17:47:04,768 | INFO     | exeerrordiag: 
[2025-10-08 19:47:55] 2025-10-08 17:47:04,768 | INFO     | exitcode: 0
[2025-10-08 19:47:55] 2025-10-08 17:47:04,768 | INFO     | exitmsg: OK
[2025-10-08 19:47:55] 2025-10-08 17:47:04,768 | INFO     | cpuconsumptiontime: 49226 s
[2025-10-08 19:47:55] 2025-10-08 17:47:04,769 | INFO     | nevents: 400
[2025-10-08 19:47:55] 2025-10-08 17:47:04,769 | INFO     | neventsw: 0
[2025-10-08 19:47:55] 2025-10-08 17:47:04,769 | INFO     | pid: 29359
[2025-10-08 19:47:55] 2025-10-08 17:47:04,769 | INFO     | pgrp: 29359
[2025-10-08 19:47:55] 2025-10-08 17:47:04,769 | INFO     | corecount: 8
[2025-10-08 19:47:55] 2025-10-08 17:47:04,769 | INFO     | event service: False
[2025-10-08 19:47:55] 2025-10-08 17:47:04,769 | INFO     | sizes: {0: 2347941, 1: 2348627, 2: 2348826, 13: 2348826, 24: 2348882, 34: 2348910, 45: 2349066, 56: 2349094, 66: 2349122, 77: 2349150, 88: 2349206, 92: 2349776, 99
[2025-10-08 19:47:55] 2025-10-08 17:47:04,769 | INFO     | --------------------------------------------------
[2025-10-08 19:47:55] 2025-10-08 17:47:04,769 | INFO     | 
[2025-10-08 19:47:55] 2025-10-08 17:47:04,770 | INFO     | executing command: ls -lF /var/lib/boinc/slots/31
[2025-10-08 19:47:55] 2025-10-08 17:47:04,919 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-08 19:47:55] 2025-10-08 17:47:04,919 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-08 19:47:55] 2025-10-08 17:47:04,919 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-08 19:47:55] 2025-10-08 17:47:04,920 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-08 19:47:55] 2025-10-08 17:47:04,920 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-08 19:47:55] 2025-10-08 17:47:04,920 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-08 19:47:55] 2025-10-08 17:47:04,920 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-08 19:47:55] 2025-10-08 17:47:04,920 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-08 19:47:55] 2025-10-08 17:47:04,920 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-08 19:47:55] 2025-10-08 17:47:04,920 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-08 19:47:55] 2025-10-08 17:47:04,920 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-08 19:47:55] 2025-10-08 17:47:04,921 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-08 19:47:55] 2025-10-08 17:47:04,921 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-08 19:47:55] 2025-10-08 17:47:04,921 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-08 19:47:55] 2025-10-08 17:47:04,921 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-08 19:47:55] 2025-10-08 17:47:04,921 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-08 19:47:55] 2025-10-08 17:47:04,921 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-08 19:47:55] 2025-10-08 17:47:04,921 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-08 19:47:55] 2025-10-08 17:47:04,921 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-08 19:47:55] 2025-10-08 17:47:04,922 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-08 19:47:55] 2025-10-08 17:47:04,922 | INFO     | job 6835902632 has completed (purged errors)
[2025-10-08 19:47:55] 2025-10-08 17:47:04,922 | INFO     | overall cleanup function is called
[2025-10-08 19:47:55] 2025-10-08 17:47:04,933 | INFO     | sufficient remaining disk space (496037265408 B)
[2025-10-08 19:47:55] 2025-10-08 17:47:04,933 | WARNING  | skipping size check of workdir since it has not been created yet
[2025-10-08 19:47:55] 2025-10-08 17:47:04,934 | INFO     | output file size check: skipping output file /var/lib/boinc/slots/31/PanDA_Pilot-6835902632/HITS.46376905._135822.pool.root.1 since it does not exist
[2025-10-08 19:47:55] 2025-10-08 17:47:05,047 | INFO     | number of running child processes to parent process 29359: 1
[2025-10-08 19:47:55] 2025-10-08 17:47:05,047 | INFO     | maximum number of monitored processes: 8
[2025-10-08 19:47:55] 2025-10-08 17:47:05,047 | INFO     | aborting job monitoring since job object (job id=6835902632) has expired
[2025-10-08 19:47:55] 2025-10-08 17:47:05,931 | INFO     | --- collectZombieJob: --- 10, [29359]
[2025-10-08 19:47:55] 2025-10-08 17:47:05,931 | INFO     | zombie collector waiting for pid 29359
[2025-10-08 19:47:55] 2025-10-08 17:47:05,932 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-08 19:47:55] 2025-10-08 17:47:05,932 | INFO     | collected zombie processes
[2025-10-08 19:47:55] 2025-10-08 17:47:05,932 | INFO     | will attempt to kill all subprocesses of pid=29359
[2025-10-08 19:47:55] 2025-10-08 17:47:06,047 | INFO     | process IDs to be killed: [29359] (in reverse order)
[2025-10-08 19:47:55] 2025-10-08 17:47:06,190 | WARNING  | found no corresponding commands to process id(s)
[2025-10-08 19:47:55] 2025-10-08 17:47:06,190 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-08 19:47:55] 2025-10-08 17:47:06,194 | INFO     | did not find any defunct processes belonging to 29359
[2025-10-08 19:47:55] 2025-10-08 17:47:06,201 | INFO     | did not find any defunct processes belonging to 29359
[2025-10-08 19:47:55] 2025-10-08 17:47:06,202 | INFO     | ready for new job
[2025-10-08 19:47:55] 2025-10-08 17:47:06,202 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-08 19:47:55] 2025-10-08 17:47:06,204 | INFO     | ***************************************
[2025-10-08 19:47:55] 2025-10-08 17:47:06,204 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-08 19:47:55] 2025-10-08 17:47:06,205 | INFO     | ***************************************
[2025-10-08 19:47:55] 2025-10-08 17:47:06,205 | INFO     | 
[2025-10-08 19:47:55] 2025-10-08 17:47:06,205 | INFO     | pilot is running in a VM
[2025-10-08 19:47:55] 2025-10-08 17:47:06,205 | INFO     | architecture information:
[2025-10-08 19:47:55] 2025-10-08 17:47:06,208 | INFO     | executing command: cat /etc/os-release
[2025-10-08 19:47:55] 2025-10-08 17:47:06,412 | INFO     | cat /etc/os-release:
[2025-10-08 19:47:55] NAME="CentOS Linux"
[2025-10-08 19:47:55] VERSION="7 (Core)"
[2025-10-08 19:47:55] ID="centos"
[2025-10-08 19:47:55] ID_LIKE="rhel fedora"
[2025-10-08 19:47:55] VERSION_ID="7"
[2025-10-08 19:47:55] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-08 19:47:55] ANSI_COLOR="0;31"
[2025-10-08 19:47:55] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-08 19:47:55] HOME_URL="https://www.centos.org/"
[2025-10-08 19:47:55] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-08 19:47:55] 
[2025-10-08 19:47:55] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-08 19:47:55] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-08 19:47:55] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-08 19:47:55] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-08 19:47:55] 
[2025-10-08 19:47:55] 2025-10-08 17:47:06,412 | INFO     | ***************************************
[2025-10-08 19:47:55] 2025-10-08 17:47:06,914 | INFO     | executing command: df -mP /var/lib/boinc/slots/31
[2025-10-08 19:47:55] 2025-10-08 17:47:07,009 | INFO     | sufficient remaining disk space (496039362560 B)
[2025-10-08 19:47:55] 2025-10-08 17:47:07,009 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-08 19:47:55] 2025-10-08 17:47:07,010 | INFO     | current server update state: UPDATING_FINAL
[2025-10-08 19:47:55] 2025-10-08 17:47:07,010 | INFO     | update_server=False
[2025-10-08 19:47:55] 2025-10-08 17:47:07,010 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-08 19:47:55] 2025-10-08 17:47:07,010 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-08 19:47:55] 2025-10-08 17:47:07,011 | INFO     | aborting loop
[2025-10-08 19:47:55] 2025-10-08 17:47:07,054 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-08 19:47:55] 2025-10-08 17:47:07,252 | INFO     | all data control threads have been joined
[2025-10-08 19:47:55] 2025-10-08 17:47:07,324 | INFO     | all payload control threads have been joined
[2025-10-08 19:47:55] 2025-10-08 17:47:07,651 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-08 19:47:55] 2025-10-08 17:47:08,015 | INFO     | [job] retrieve thread has finished
[2025-10-08 19:47:55] 2025-10-08 17:47:08,016 | INFO     | [job] job monitor thread has finished
[2025-10-08 19:47:55] 2025-10-08 17:47:08,155 | INFO     | [payload] execute_payloads thread has finished
[2025-10-08 19:47:55] 2025-10-08 17:47:08,204 | INFO     | [job] create_data_payload thread has finished
[2025-10-08 19:47:55] 2025-10-08 17:47:08,258 | INFO     | [data] control thread has finished
[2025-10-08 19:47:55] 2025-10-08 17:47:08,330 | INFO     | [payload] control thread has finished
[2025-10-08 19:47:55] 2025-10-08 17:47:08,342 | INFO     | all job control threads have been joined
[2025-10-08 19:47:55] 2025-10-08 17:47:09,121 | INFO     | [job] validate thread has finished
[2025-10-08 19:47:55] 2025-10-08 17:47:09,302 | INFO     | [payload] validate_pre thread has finished
[2025-10-08 19:47:55] 2025-10-08 17:47:09,348 | INFO     | [job] control thread has finished
[2025-10-08 19:47:55] 2025-10-08 17:47:09,419 | INFO     | [payload] failed_post thread has finished
[2025-10-08 19:47:55] 2025-10-08 17:47:09,448 | INFO     | [data] copytool_in thread has finished
[2025-10-08 19:47:55] 2025-10-08 17:47:09,514 | INFO     | [payload] validate_post thread has finished
[2025-10-08 19:47:55] 2025-10-08 17:47:09,658 | INFO     | [data] copytool_out thread has finished
[2025-10-08 19:47:55] 2025-10-08 17:47:09,781 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-08 19:47:55] 2025-10-08 17:47:10,786 | INFO     | [job] queue monitor thread has finished
[2025-10-08 19:47:55] 2025-10-08 17:47:11,064 | INFO     | [data] queue_monitor thread has finished
[2025-10-08 19:47:55] 2025-10-08 17:47:17,916 | INFO     | job.realtimelogging is not enabled
[2025-10-08 19:47:55] 2025-10-08 17:47:18,176 [wrapper] supervise_pilot (15 min periods counter: 16)
[2025-10-08 19:47:55] 2025-10-08 17:47:18,922 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-08 19:47:55] 2025-10-08 17:47:37,386 | INFO     | PID=22835 has CPU usage=1.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-08 19:47:55] 2025-10-08 17:47:37,386 | INFO     | .. there are 9 such processes running
[2025-10-08 19:47:55] 2025-10-08 17:47:37,386 | INFO     | found 0 job(s) in 20 queues
[2025-10-08 19:47:55] 2025-10-08 17:47:37,386 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-08 19:47:55] 2025-10-08 17:47:37,387 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-08 19:47:55] 2025-10-08 17:47:44,965 | INFO     | [monitor] cgroup control has ended
[2025-10-08 19:47:55] 2025-10-08 17:47:46,324 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140514129332032)>', '<ExcThread(monitor, started 140513478964992)>']
[2025-10-08 19:47:55] 2025-10-08 17:47:46,441 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-08 19:47:55] 2025-10-08 17:47:46,441 | INFO     | [monitor] control thread has ended
[2025-10-08 19:47:55] 2025-10-08 17:47:51,350 | INFO     | all workflow threads have been joined
[2025-10-08 19:47:55] 2025-10-08 17:47:51,351 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-08 19:47:55] 2025-10-08 17:47:51,351 | INFO     | traces error code: 0
[2025-10-08 19:47:55] 2025-10-08 17:47:51,351 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-08 19:47:55] 2025-10-08 17:47:51,686 [wrapper] ==== pilot stdout END ====
[2025-10-08 19:47:55] 2025-10-08 17:47:51,746 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-08 19:47:55] 2025-10-08 17:47:51,804 [wrapper] pilotpid: 22835
[2025-10-08 19:47:55] 2025-10-08 17:47:51,859 [wrapper] Pilot exit status: 0
[2025-10-08 19:47:55] 2025-10-08 17:47:52,295 [wrapper] pandaids: 6835902632
[2025-10-08 19:47:55] 2025-10-08 17:47:53,235 [wrapper] cleanup supervisor_pilot  6309 22836
[2025-10-08 19:47:55] 2025-10-08 17:47:53,272 [wrapper] Test setup, not cleaning
[2025-10-08 19:47:55] 2025-10-08 17:47:53,295 [wrapper] apfmon messages muted
[2025-10-08 19:47:55] 2025-10-08 17:47:53,330 [wrapper] ==== wrapper stdout END ====
[2025-10-08 19:47:55] 2025-10-08 17:47:53,365 [wrapper] ==== wrapper stderr END ====
[2025-10-08 19:47:55]  *** Error codes and diagnostics ***
[2025-10-08 19:47:55]     "exeErrorCode": 0,
[2025-10-08 19:47:55]     "exeErrorDiag": "",
[2025-10-08 19:47:55]     "pilotErrorCode": 0,
[2025-10-08 19:47:55]     "pilotErrorDiag": "",
[2025-10-08 19:47:55]  *** Listing of results directory ***
[2025-10-08 19:47:55] total 395948
[2025-10-08 19:47:55] -rw-r--r--. 1 boinc boinc    557409 Oct  8 10:25 pilot3.tar.gz
[2025-10-08 19:47:55] -rwx------. 1 boinc boinc     36292 Oct  8 10:34 runpilot2-wrapper.sh
[2025-10-08 19:47:55] -rw-r--r--. 1 boinc boinc      5112 Oct  8 10:34 queuedata.json
[2025-10-08 19:47:55] -rw-r--r--. 1 boinc boinc       100 Oct  8 15:58 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-08 19:47:55] -rwxr-xr-x. 1 boinc boinc      7986 Oct  8 15:58 run_atlas
[2025-10-08 19:47:55] -rw-r--r--. 1 boinc boinc       105 Oct  8 15:58 job.xml
[2025-10-08 19:47:55] -rw-r--r--. 1 boinc boinc      6393 Oct  8 15:58 init_data.xml
[2025-10-08 19:47:55] -rw-r--r--. 2 boinc boinc 214450667 Oct  8 15:58 EVNT.46376901._004261.pool.root.1
[2025-10-08 19:47:55] -rw-r--r--. 2 boinc boinc     15120 Oct  8 15:58 start_atlas.sh
[2025-10-08 19:47:55] drwxrwx--x. 2 boinc boinc        68 Oct  8 15:58 shared
[2025-10-08 19:47:55] -rw-r--r--. 2 boinc boinc    569676 Oct  8 15:58 input.tar.gz
[2025-10-08 19:47:55] -rw-r--r--. 1 boinc boinc         0 Oct  8 15:58 boinc_lockfile
[2025-10-08 19:47:55] -rw-r--r--. 1 boinc boinc      2520 Oct  8 15:58 pandaJob.out
[2025-10-08 19:47:55] -rw-------. 1 boinc boinc    979369 Oct  8 16:02 agis_schedconf.cvmfs.json
[2025-10-08 19:47:55] drwx------. 5 boinc boinc      4096 Oct  8 16:02 pilot3
[2025-10-08 19:47:55] -rw-------. 1 boinc boinc 182583259 Oct  8 19:46 HITS.46376905._135822.pool.root.1
[2025-10-08 19:47:55] -rw-r--r--. 1 boinc boinc       531 Oct  8 19:46 boinc_task_state.xml
[2025-10-08 19:47:55] -rw-------. 1 boinc boinc        95 Oct  8 19:46 pilot_heartbeat.json
[2025-10-08 19:47:55] -rw-------. 1 boinc boinc      1018 Oct  8 19:46 memory_monitor_summary.json
[2025-10-08 19:47:55] -rw-------. 1 boinc boinc   1560401 Oct  8 19:46 agis_ddmendpoints.agis.ALL.json
[2025-10-08 19:47:55] -rw-------. 1 boinc boinc    458652 Oct  8 19:46 log.46376905._135822.job.log.tgz.1
[2025-10-08 19:47:55] -rw-------. 1 boinc boinc      7793 Oct  8 19:47 heartbeat.json
[2025-10-08 19:47:55] -rw-r--r--. 1 boinc boinc        28 Oct  8 19:47 wrapper_checkpoint.txt
[2025-10-08 19:47:55] -rw-r--r--. 1 boinc boinc      8192 Oct  8 19:47 boinc_mmap_file
[2025-10-08 19:47:55] -rw-------. 1 boinc boinc      4957 Oct  8 19:47 pilotlog.txt
[2025-10-08 19:47:55] -rw-------. 1 boinc boinc   1805297 Oct  8 19:47 log.46376905._135822.job.log.1
[2025-10-08 19:47:55] -rw-------. 1 boinc boinc       357 Oct  8 19:47 output.list
[2025-10-08 19:47:55] -rw-r--r--. 1 boinc boinc       620 Oct  8 19:47 runtime_log
[2025-10-08 19:47:55] -rw-------. 1 boinc boinc   2283520 Oct  8 19:47 result.tar.gz
[2025-10-08 19:47:55] -rw-------. 1 boinc boinc       657 Oct  8 19:47 akGMDmVoeQ8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmacXNDmRHnoln.diag
[2025-10-08 19:47:55] -rw-r--r--. 1 boinc boinc      8717 Oct  8 19:47 runtime_log.err
[2025-10-08 19:47:55] -rw-r--r--. 1 boinc boinc     20855 Oct  8 19:47 stderr.txt
[2025-10-08 19:47:55] HITS file was successfully produced:
[2025-10-08 19:47:55] -rw-------. 1 boinc boinc 182583259 Oct  8 19:46 shared/HITS.pool.root.1
[2025-10-08 19:47:55]  *** Contents of shared directory: ***
[2025-10-08 19:47:55] total 390540
[2025-10-08 19:47:55] -rw-r--r--. 2 boinc boinc 214450667 Oct  8 15:58 ATLAS.root_0
[2025-10-08 19:47:55] -rw-r--r--. 2 boinc boinc     15120 Oct  8 15:58 start_atlas.sh
[2025-10-08 19:47:55] -rw-r--r--. 2 boinc boinc    569676 Oct  8 15:58 input.tar.gz
[2025-10-08 19:47:55] -rw-------. 1 boinc boinc 182583259 Oct  8 19:46 HITS.pool.root.1
[2025-10-08 19:47:55] -rw-------. 1 boinc boinc   2283520 Oct  8 19:47 result.tar.gz
19:47:57 (19001): run_atlas exited; CPU time 49411.738262
19:47:57 (19001): called boinc_finish(0)

</stderr_txt>
]]>

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