Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
10:36:28 (1662840): wrapper (7.7.26015): starting
10:36:28 (1662840): wrapper: running run_atlas (--nthreads 3)
[2025-10-08 10:36:28] Arguments: --nthreads 3
[2025-10-08 10:36:28] Threads: 3
[2025-10-08 10:36:28] Checking for CVMFS
[2025-10-08 10:36:28] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-08 10:36:28] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-08 10:36:28] Running cvmfs_config stat atlas.cern.ch
[2025-10-08 10:36:28] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-08 10:36:28] 2.9.2.0 1636747 83 50664 151465 0 57 27769971 36864000 0 130560 0 65661 99.996 2663 1110 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-08 10:36:28] CVMFS is ok
[2025-10-08 10:36:28] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-08 10:36:28] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-08 10:36:28] Further information can be found at the LHC@home message board.
[2025-10-08 10:36:28] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-08 10:36:28] Checking for apptainer binary...
[2025-10-08 10:36:28] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-08 10:36:28] Running /usr/bin/apptainer --version
[2025-10-08 10:36:28] apptainer version 1.4.1-1.1
[2025-10-08 10:36:28] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-08 10:36:28] thA385
[2025-10-08 10:36:28] apptainer works
[2025-10-08 10:36:28] Set ATHENA_PROC_NUMBER=3
[2025-10-08 10:36:28] Set ATHENA_CORE_NUMBER=3
[2025-10-08 10:36:28] Starting ATLAS job with PandaID=6835801686
[2025-10-08 10:36:28] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-08 11:57:46]  *** The last 200 lines of the pilot log: ***
[2025-10-08 11:57:46] 2025-10-08 09:57:01,214 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-08 11:57:46] 2025-10-08 09:57:01,214 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-08 11:57:46] 2025-10-08 09:57:01,214 | INFO     | aborting loop
[2025-10-08 11:57:46] 2025-10-08 09:57:01,214 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-08 11:57:46] 2025-10-08 09:57:01,215 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-08 11:57:46] 2025-10-08 09:57:01,215 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-08 11:57:46] 2025-10-08 09:57:01,964 | INFO     | all data control threads have been joined
[2025-10-08 11:57:46] 2025-10-08 09:57:02,220 | INFO     | [job] job monitor thread has finished
[2025-10-08 11:57:46] 2025-10-08 09:57:02,220 | INFO     | [job] retrieve thread has finished
[2025-10-08 11:57:46] 2025-10-08 09:57:02,220 | INFO     | [job] queue monitor thread has finished
[2025-10-08 11:57:46] 2025-10-08 09:57:02,280 | INFO     | [payload] validate_pre thread has finished
[2025-10-08 11:57:46] 2025-10-08 09:57:02,318 | INFO     | [payload] validate_post thread has finished
[2025-10-08 11:57:46] 2025-10-08 09:57:02,365 | INFO     | all payload control threads have been joined
[2025-10-08 11:57:46] 2025-10-08 09:57:02,431 | INFO     | all job control threads have been joined
[2025-10-08 11:57:46] 2025-10-08 09:57:02,970 | INFO     | [data] control thread has finished
[2025-10-08 11:57:46] 2025-10-08 09:57:03,021 | INFO     | [job] validate thread has finished
[2025-10-08 11:57:46] 2025-10-08 09:57:03,126 | INFO     | [payload] execute_payloads thread has finished
[2025-10-08 11:57:46] 2025-10-08 09:57:03,202 | INFO     | [job] create_data_payload thread has finished
[2025-10-08 11:57:46] 2025-10-08 09:57:03,203 | INFO     | [data] copytool_in thread has finished
[2025-10-08 11:57:46] 2025-10-08 09:57:03,221 | INFO     | [data] copytool_out thread has finished
[2025-10-08 11:57:46] 2025-10-08 09:57:03,256 | INFO     | [payload] failed_post thread has finished
[2025-10-08 11:57:46] 2025-10-08 09:57:03,370 | INFO     | [payload] control thread has finished
[2025-10-08 11:57:46] 2025-10-08 09:57:03,436 | INFO     | [job] control thread has finished
[2025-10-08 11:57:46] 2025-10-08 09:57:05,222 | INFO     | [data] queue_monitor thread has finished
[2025-10-08 11:57:46] 2025-10-08 09:57:11,321 | INFO     | job.realtimelogging is not enabled
[2025-10-08 11:57:46] 2025-10-08 09:57:12,327 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-08 11:57:46] 2025-10-08 09:57:31,829 | INFO     | PID=1666555 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-08 11:57:46] 2025-10-08 09:57:31,829 | INFO     | found 0 job(s) in 20 queues
[2025-10-08 11:57:46] 2025-10-08 09:57:31,829 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-08 11:57:46] 2025-10-08 09:57:31,829 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-08 11:57:46] 2025-10-08 09:57:39,995 | INFO     | [monitor] cgroup control has ended
[2025-10-08 11:57:46] 2025-10-08 09:57:41,619 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140638779344704)>', '<ExcThread(monitor, started 140638158841600)>']
[2025-10-08 11:57:46] 2025-10-08 09:57:41,882 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-08 11:57:46] 2025-10-08 09:57:41,882 | INFO     | [monitor] control thread has ended
[2025-10-08 11:57:46] 2025-10-08 09:57:46,644 | INFO     | all workflow threads have been joined
[2025-10-08 11:57:46] 2025-10-08 09:57:46,645 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-08 11:57:46] 2025-10-08 09:57:46,645 | INFO     | traces error code: 0
[2025-10-08 11:57:46] 2025-10-08 09:57:46,645 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-08 11:57:46] 2025-10-08 09:57:46,695 [wrapper] ==== pilot stdout END ====
[2025-10-08 11:57:46] 2025-10-08 09:57:46,698 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-08 11:57:46] 2025-10-08 09:57:46,700 [wrapper] pilotpid: 1666555
[2025-10-08 11:57:46] 2025-10-08 09:57:46,702 [wrapper] Pilot exit status: 0
[2025-10-08 11:57:46] 2025-10-08 09:57:46,710 [wrapper] pandaids: 6835801686
[2025-10-08 11:57:46] 2025-10-08 09:57:46,728 [wrapper] cleanup supervisor_pilot 1685109 1666556
[2025-10-08 11:57:46] 2025-10-08 09:57:46,731 [wrapper] Test setup, not cleaning
[2025-10-08 11:57:46] 2025-10-08 09:57:46,733 [wrapper] apfmon messages muted
[2025-10-08 11:57:46] 2025-10-08 09:57:46,736 [wrapper] ==== wrapper stdout END ====
[2025-10-08 11:57:46] 2025-10-08 09:57:46,738 [wrapper] ==== wrapper stderr END ====
[2025-10-08 11:57:46]  *** Error codes and diagnostics ***
[2025-10-08 11:57:46]     "exeErrorCode": 0,
[2025-10-08 11:57:46]     "exeErrorDiag": "",
[2025-10-08 11:57:46]     "pilotErrorCode": 0,
[2025-10-08 11:57:46]     "pilotErrorDiag": "",
[2025-10-08 11:57:46]  *** Listing of results directory ***
[2025-10-08 11:57:46] total 404252
[2025-10-08 11:57:46] -rw-r--r-- 1 boinc boinc    552446 Oct  8 08:43 pilot3.tar.gz
[2025-10-08 11:57:46] -rwx------ 1 boinc boinc     36292 Oct  8 08:58 runpilot2-wrapper.sh
[2025-10-08 11:57:46] -rw-r--r-- 1 boinc boinc      5112 Oct  8 08:59 queuedata.json
[2025-10-08 11:57:46] -rw-r--r-- 1 boinc boinc       100 Oct  8 10:36 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-08 11:57:46] -rwxr-xr-x 1 boinc boinc      7986 Oct  8 10:36 run_atlas
[2025-10-08 11:57:46] -rw-r--r-- 1 boinc boinc       105 Oct  8 10:36 job.xml
[2025-10-08 11:57:46] -rw-r--r-- 2 boinc boinc 221461209 Oct  8 10:36 EVNT.46676267._000056.pool.root.1
[2025-10-08 11:57:46] -rw-r--r-- 2 boinc boinc    565603 Oct  8 10:36 input.tar.gz
[2025-10-08 11:57:46] -rw-r--r-- 2 boinc boinc     15120 Oct  8 10:36 start_atlas.sh
[2025-10-08 11:57:46] drwxrwx--x 2 boinc boinc      4096 Oct  8 10:36 shared
[2025-10-08 11:57:46] -rw-r--r-- 1 boinc boinc         0 Oct  8 10:36 boinc_setup_complete
[2025-10-08 11:57:46] -rw-r--r-- 1 boinc boinc      6446 Oct  8 10:36 init_data.xml
[2025-10-08 11:57:46] -rw-r--r-- 1 boinc boinc         0 Oct  8 10:36 boinc_lockfile
[2025-10-08 11:57:46] -rw-r--r-- 1 boinc boinc      2547 Oct  8 10:36 pandaJob.out
[2025-10-08 11:57:46] -rw------- 1 boinc boinc    979817 Oct  8 10:36 agis_schedconf.cvmfs.json
[2025-10-08 11:57:46] -rw------- 1 boinc boinc   1560401 Oct  8 10:36 agis_ddmendpoints.agis.ALL.json
[2025-10-08 11:57:46] drwx------ 4 boinc boinc      4096 Oct  8 10:36 pilot3
[2025-10-08 11:57:46] -rw------- 1 boinc boinc 186665146 Oct  8 11:56 HITS.46676269._001401.pool.root.1
[2025-10-08 11:57:46] -rw-r--r-- 1 boinc boinc       529 Oct  8 11:56 boinc_task_state.xml
[2025-10-08 11:57:46] -rw------- 1 boinc boinc      1019 Oct  8 11:56 memory_monitor_summary.json
[2025-10-08 11:57:46] -rw------- 1 boinc boinc    268838 Oct  8 11:56 log.46676269._001401.job.log.tgz.1
[2025-10-08 11:57:46] -rw------- 1 boinc boinc        95 Oct  8 11:56 pilot_heartbeat.json
[2025-10-08 11:57:46] -rw------- 1 boinc boinc      7752 Oct  8 11:56 heartbeat.json
[2025-10-08 11:57:46] -rw-r--r-- 1 boinc boinc      8192 Oct  8 11:57 boinc_mmap_file
[2025-10-08 11:57:46] -rw-r--r-- 1 boinc boinc        27 Oct  8 11:57 wrapper_checkpoint.txt
[2025-10-08 11:57:46] -rw------- 1 boinc boinc      4824 Oct  8 11:57 pilotlog.txt
[2025-10-08 11:57:46] -rw------- 1 boinc boinc    707787 Oct  8 11:57 log.46676269._001401.job.log.1
[2025-10-08 11:57:46] -rw------- 1 boinc boinc       357 Oct  8 11:57 output.list
[2025-10-08 11:57:46] -rw-r--r-- 1 boinc boinc       620 Oct  8 11:57 runtime_log
[2025-10-08 11:57:46] -rw------- 1 boinc boinc    993280 Oct  8 11:57 result.tar.gz
[2025-10-08 11:57:46] -rw-r--r-- 1 boinc boinc      8777 Oct  8 11:57 runtime_log.err
[2025-10-08 11:57:46] -rw------- 1 boinc boinc       658 Oct  8 11:57 d2kMDmVJdQ8n9Rq4apOajLDm4fhM0noT9bVof3QYDmzzLMDmdqLUEn.diag
[2025-10-08 11:57:46] -rw-r--r-- 1 boinc boinc      7424 Oct  8 11:57 stderr.txt
[2025-10-08 11:57:46] HITS file was successfully produced:
[2025-10-08 11:57:46] -rw------- 1 boinc boinc 186665146 Oct  8 11:56 shared/HITS.pool.root.1
[2025-10-08 11:57:46]  *** Contents of shared directory: ***
[2025-10-08 11:57:46] total 400116
[2025-10-08 11:57:46] -rw-r--r-- 2 boinc boinc 221461209 Oct  8 10:36 ATLAS.root_0
[2025-10-08 11:57:46] -rw-r--r-- 2 boinc boinc    565603 Oct  8 10:36 input.tar.gz
[2025-10-08 11:57:46] -rw-r--r-- 2 boinc boinc     15120 Oct  8 10:36 start_atlas.sh
[2025-10-08 11:57:46] -rw------- 1 boinc boinc 186665146 Oct  8 11:56 HITS.pool.root.1
[2025-10-08 11:57:46] -rw------- 1 boinc boinc    993280 Oct  8 11:57 result.tar.gz
11:57:48 (1662840): run_atlas exited; CPU time 13761.961242
11:57:48 (1662840): called boinc_finish(0)

</stderr_txt>
]]>

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