Stderr output

<core_client_version>8.0.2</core_client_version>
<![CDATA[
<stderr_txt>
2025-10-08 18:03:18 (9728): vboxwrapper version 26210
2025-10-08 18:03:18 (9728): BOINC client version: 8.0.2
2025-10-08 18:03:19 (9728): Detected: VirtualBox VboxManage Interface (Version: 7.0.8)
2025-10-08 18:03:19 (9728): Successfully copied 'init_data.xml' to the shared directory.
2025-10-08 18:03:20 (9728): Create VM. (boinc_49fa3af9c3683ad7, slot#12)
2025-10-08 18:03:20 (9728): Setting Memory Size for VM. (4800MB)
2025-10-08 18:03:20 (9728): Setting CPU Count for VM. (8)
2025-10-08 18:03:21 (9728): Setting Chipset Options for VM.
2025-10-08 18:03:22 (9728): Setting Graphics Controller Options for VM. (Driver: VBoxVGA, 16MB)
2025-10-08 18:03:22 (9728): Setting Boot Options for VM.
2025-10-08 18:03:23 (9728): Setting Network Configuration for NAT. (Driver: virtio)
2025-10-08 18:03:24 (9728): Enabling VM Network Access.
2025-10-08 18:03:24 (9728): Disabling USB Support for VM.
2025-10-08 18:03:25 (9728): Disabling COM Port Support for VM.
2025-10-08 18:03:26 (9728): Disabling LPT Port Support for VM.
2025-10-08 18:03:26 (9728): Disabling Audio Support for VM.
2025-10-08 18:03:27 (9728): Disabling Clipboard Support for VM.
2025-10-08 18:03:27 (9728): Disabling Drag and Drop Support for VM.
2025-10-08 18:03:28 (9728): Adding storage controller(s) to VM.
2025-10-08 18:03:28 (9728): Adding virtual disk drive to VM. (ATLAS_vbox_3.03_image.vdi)
2025-10-08 18:03:32 (9728): Adding VirtualBox Guest Additions to VM.
2025-10-08 18:03:33 (9728): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-10-08 18:03:33 (9728): forwarding host port 54747 to guest port 80
2025-10-08 18:03:34 (9728): Enabling remote desktop for VM.
2025-10-08 18:03:34 (9728): Required extension pack not installed, remote desktop not enabled.
2025-10-08 18:03:34 (9728): Enabling shared directory for VM.
2025-10-08 18:03:34 (9728): Starting VM using VBoxManage interface. (boinc_49fa3af9c3683ad7, slot#12)
2025-10-08 18:03:43 (9728): Successfully started VM. (PID = '1996')
2025-10-08 18:03:43 (9728): Reporting VM Process ID to BOINC.
2025-10-08 18:03:43 (9728): Guest Log: BIOS: VirtualBox 7.0.8
2025-10-08 18:03:43 (9728): Guest Log: CPUID EDX: 0x178bfbff
2025-10-08 18:03:43 (9728): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-10-08 18:03:43 (9728): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-10-08 18:03:43 (9728): VM state change detected. (old = 'poweredoff', new = 'running')
2025-10-08 18:03:43 (9728): Detected: Web Application Enabled (http://localhost:54747)
2025-10-08 18:03:43 (9728): Preference change detected
2025-10-08 18:03:43 (9728): Setting CPU throttle for VM. (99%)
2025-10-08 18:03:43 (9728): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-10-08 18:03:45 (9728): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-10-08 18:03:45 (9728): Guest Log: BIOS: Booting from Hard Disk...
2025-10-08 18:03:50 (9728): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-10-08 18:03:50 (9728): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-10-08 18:03:50 (9728): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-10-08 18:03:50 (9728): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-10-08 18:03:50 (9728): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-10-08 18:03:50 (9728): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-10-08 18:03:50 (9728): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-10-08 18:03:50 (9728): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-10-08 18:03:50 (9728): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-10-08 18:03:50 (9728): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-10-08 18:03:50 (9728): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-10-08 18:03:50 (9728): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-10-08 18:03:50 (9728): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-10-08 18:03:50 (9728): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-10-08 18:03:50 (9728): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-10-08 18:03:50 (9728): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-10-08 18:03:50 (9728): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-10-08 18:03:50 (9728): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-10-08 18:03:50 (9728): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-10-08 18:03:50 (9728): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-10-08 18:03:50 (9728): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-10-08 18:03:50 (9728): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-10-08 18:03:50 (9728): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-10-08 18:03:50 (9728): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-10-08 18:03:50 (9728): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-10-08 18:03:50 (9728): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-10-08 18:03:50 (9728): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-10-08 18:03:50 (9728): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-10-08 18:03:50 (9728): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-10-08 18:03:50 (9728): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-10-08 18:03:50 (9728): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-10-08 18:03:50 (9728): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-10-08 18:03:58 (9728): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-10-08 18:03:58 (9728): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-10-08 18:04:09 (9728): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-10-08 18:04:09 (9728): Guest Log: 00:00:00.000141 main     Log opened 2025-10-08T18:04:07.760322000Z
2025-10-08 18:04:09 (9728): Guest Log: 00:00:00.000237 main     OS Product: Linux
2025-10-08 18:04:09 (9728): Guest Log: 00:00:00.000285 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-10-08 18:04:09 (9728): Guest Log: 00:00:00.000322 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-10-08 18:04:09 (9728): Guest Log: 00:00:00.000366 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-10-08 18:04:09 (9728): Guest Log: 00:00:00.000367 main     Process ID: 1392
2025-10-08 18:04:09 (9728): Guest Log: 00:00:00.000368 main     Package type: LINUX_64BITS_GENERIC
2025-10-08 18:04:09 (9728): Guest Log: 00:00:00.001627 main     5.2.32 r132073 started. Verbose level = 0
2025-10-08 18:04:09 (9728): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-10-08 18:04:09 (9728): Guest Log: [INFO] Mounting shared directory
2025-10-08 18:04:09 (9728): Guest Log: [INFO] Checking for init_data.xml
2025-10-08 18:04:19 (9728): Guest Log: 00:00:10.003977 timesync vgsvcTimeSyncWorker: Radical guest time change: -39 589 046 799 000ns (GuestNow=1 759 907 058 716 623 000 ns GuestLast=1 759 946 647 763 422 000 ns fSetTimeLastLoop=true )
2025-10-08 18:04:19 (9728): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-10-08 18:04:19 (9728): Guest Log: [INFO] Detected branch: prod
2025-10-08 18:04:19 (9728): Guest Log: This is the prod version of the ATLAS job wrapper
2025-10-08 18:04:19 (9728): Guest Log: Copying input files
2025-10-08 18:04:21 (9728): Guest Log: Copied input files into RunAtlas.
2025-10-08 18:04:21 (9728): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-10-08 18:04:21 (9728): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-10-08 18:04:21 (9728): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-10-08 18:04:21 (9728): Guest Log: Further information can be found at the LHC@home message board.
2025-10-08 18:05:00 (9728): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-10-08 18:05:00 (9728): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-10-08 18:05:00 (9728): Guest Log: 2.6.3.0 1671 0 30140 151463 4 1 3120538 4096000 0 65024 0 0 n/a 1292 293 http://s1bnl-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2025-10-08 18:05:01 (9728): Guest Log: copied the webapp to /var/www
2025-10-08 18:05:01 (9728): Guest Log: ATHENA_PROC_NUMBER=8
2025-10-08 18:05:01 (9728): Guest Log: ATHENA_CORE_NUMBER=8
2025-10-08 18:05:01 (9728): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-10-08 18:05:01 (9728): Guest Log:  *** Starting ATLAS job. (PandaID=6835801634 taskID=46676269) ***
2025-10-08 19:43:59 (9728): Status Report: Elapsed Time: '6000.000000'
2025-10-08 19:43:59 (9728): Status Report: CPU Time: '26499.546875'
2025-10-08 21:24:23 (9728): Status Report: Elapsed Time: '12000.490496'
2025-10-08 21:24:23 (9728): Status Report: CPU Time: '68785.531250'
2025-10-08 22:30:00 (9728): Guest Log:  *** Job finished ***
2025-10-08 22:30:00 (9728): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-10-08 22:30:00 (9728): Guest Log: 2025-10-08 11:29:27,907 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
2025-10-08 22:30:00 (9728): Guest Log: 2025-10-08 11:29:27,907 | WARNING  | will wait for a maximum of 300 s for threads to finish
2025-10-08 22:30:00 (9728): Guest Log: 2025-10-08 11:29:51,006 | INFO     | [monitor] cgroup control has ended
2025-10-08 22:30:00 (9728): Guest Log: 2025-10-08 11:29:52,132 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139985211389760)>', '<ExcThread(monitor, started 139984770156288)>']
2025-10-08 22:30:00 (9728): Guest Log: 2025-10-08 11:29:52,262 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-10-08 22:30:00 (9728): Guest Log: 2025-10-08 11:29:52,262 | INFO     | [monitor] control thread has ended
2025-10-08 22:30:00 (9728): Guest Log: 2025-10-08 11:29:57,137 | INFO     | all workflow threads have been joined
2025-10-08 22:30:00 (9728): Guest Log: 2025-10-08 11:29:57,138 | INFO     | end of generic workflow (traces error code: 0)
2025-10-08 22:30:00 (9728): Guest Log: 2025-10-08 11:29:57,138 | INFO     | traces error code: 0
2025-10-08 22:30:00 (9728): Guest Log: 2025-10-08 11:29:57,138 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-10-08 22:30:00 (9728): Guest Log: 2025-10-08 11:29:57,254 [wrapper] ==== pilot stdout END ====
2025-10-08 22:30:00 (9728): Guest Log: 2025-10-08 11:29:57,259 [wrapper] ==== wrapper stdout RESUME ====
2025-10-08 22:30:00 (9728): Guest Log: 2025-10-08 11:29:57,265 [wrapper] pilotpid: 6112
2025-10-08 22:30:00 (9728): Guest Log: 2025-10-08 11:29:57,271 [wrapper] Pilot exit status: 0
2025-10-08 22:30:00 (9728): Guest Log: 2025-10-08 11:29:57,332 [wrapper] pandaids: 6835801634
2025-10-08 22:30:00 (9728): Guest Log: 2025-10-08 11:29:57,381 [wrapper] cleanup supervisor_pilot 14070 6113
2025-10-08 22:30:00 (9728): Guest Log: 2025-10-08 11:29:57,391 [wrapper] Test setup, not cleaning
2025-10-08 22:30:00 (9728): Guest Log: 2025-10-08 11:29:57,399 [wrapper] apfmon messages muted
2025-10-08 22:30:00 (9728): Guest Log: 2025-10-08 11:29:57,406 [wrapper] ==== wrapper stdout END ====
2025-10-08 22:30:00 (9728): Guest Log: 2025-10-08 11:29:57,412 [wrapper] ==== wrapper stderr END ====
2025-10-08 22:30:00 (9728): Guest Log:  *** Error codes and diagnostics ***
2025-10-08 22:30:00 (9728): Guest Log:     "exeErrorCode": 0,
2025-10-08 22:30:00 (9728): Guest Log:     "exeErrorDiag": "",
2025-10-08 22:30:00 (9728): Guest Log:     "pilotErrorCode": 0,
2025-10-08 22:30:00 (9728): Guest Log:     "pilotErrorDiag": "",
2025-10-08 22:30:00 (9728): Guest Log:  *** Listing of results directory ***
2025-10-08 22:30:00 (9728): Guest Log: total 196768
2025-10-08 22:30:00 (9728): Guest Log: -rw-r--r--. 1 atlas atlas    552446 Oct  8 06:43 pilot3.tar.gz
2025-10-08 22:30:00 (9728): Guest Log: -rwx------. 1 atlas atlas     36292 Oct  8 06:58 runpilot2-wrapper.sh
2025-10-08 22:30:00 (9728): Guest Log: -rw-r--r--. 1 atlas atlas      5112 Oct  8 06:59 queuedata.json
2025-10-08 22:30:00 (9728): Guest Log: -rwxr-xr-x. 1 atlas atlas      8839 Oct  8 07:04 init_data.xml
2025-10-08 22:30:00 (9728): Guest Log: -rwxr-xr-x. 1 atlas atlas    565603 Oct  8 07:04 input.tar.gz
2025-10-08 22:30:00 (9728): Guest Log: -rwxr-xr-x. 1 atlas atlas     15120 Oct  8 07:04 start_atlas.sh
2025-10-08 22:30:00 (9728): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Oct  8 07:04 EVNT.46676267._000054.pool.root.1 -> /data/./ATLAS.root_0
2025-10-08 22:30:00 (9728): Guest Log: -rw-r--r--. 1 atlas atlas      2547 Oct  8 07:05 pandaJob.out
2025-10-08 22:30:00 (9728): Guest Log: -rw-------. 1 atlas atlas    979841 Oct  8 07:06 agis_schedconf.cvmfs.json
2025-10-08 22:30:00 (9728): Guest Log: drwx------. 4 atlas atlas      4096 Oct  8 07:06 pilot3
2025-10-08 22:30:00 (9728): Guest Log: -rw-------. 1 atlas atlas 192710215 Oct  8 11:27 HITS.46676269._001349.pool.root.1
2025-10-08 22:30:00 (9728): Guest Log: -rw-------. 1 atlas atlas      1032 Oct  8 11:28 memory_monitor_summary.json
2025-10-08 22:30:00 (9728): Guest Log: -rw-------. 1 atlas atlas   1560401 Oct  8 11:28 agis_ddmendpoints.agis.ALL.json
2025-10-08 22:30:00 (9728): Guest Log: -rw-------. 1 atlas atlas    483332 Oct  8 11:28 log.46676269._001349.job.log.tgz.1
2025-10-08 22:30:00 (9728): Guest Log: -rw-------. 1 atlas atlas      7830 Oct  8 11:28 heartbeat.json
2025-10-08 22:30:00 (9728): Guest Log: -rw-------. 1 atlas atlas        95 Oct  8 11:29 pilot_heartbeat.json
2025-10-08 22:30:00 (9728): Guest Log: -rw-------. 1 atlas atlas      4805 Oct  8 11:29 pilotlog.txt
2025-10-08 22:30:00 (9728): Guest Log: -rw-------. 1 atlas atlas   1993250 Oct  8 11:29 log.46676269._001349.job.log.1
2025-10-08 22:30:00 (9728): Guest Log: -rw-------. 1 atlas atlas       357 Oct  8 11:29 output.list
2025-10-08 22:30:00 (9728): Guest Log: -rw-r--r--. 1 atlas atlas       620 Oct  8 11:29 runtime_log
2025-10-08 22:30:00 (9728): Guest Log: -rw-------. 1 atlas atlas   2498560 Oct  8 11:29 result.tar.gz
2025-10-08 22:30:00 (9728): Guest Log: -rw-------. 1 atlas atlas       662 Oct  8 11:29 W7pLDmVJdQ8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmiWXNDmGShUhm.diag
2025-10-08 22:30:00 (9728): Guest Log: -rw-r--r--. 1 atlas atlas      8646 Oct  8 11:29 runtime_log.err
2025-10-08 22:30:00 (9728): Guest Log: Looking for outputfile HITS.46676269._001349.pool.root.1
2025-10-08 22:30:00 (9728): Guest Log: HITS file was successfully produced
2025-10-08 22:30:00 (9728): Guest Log: -rw-------. 1 atlas atlas 192710215 Oct  8 11:27 /home/atlas/RunAtlas/HITS.46676269._001349.pool.root.1
2025-10-08 22:30:01 (9728): Guest Log: Successfully finished the ATLAS job!
2025-10-08 22:30:01 (9728): Guest Log: Copying the results back to the shared directory!
2025-10-08 22:30:01 (9728): Guest Log:  *** Contents of shared directory: ***
2025-10-08 22:30:01 (9728): Guest Log: total 403872
2025-10-08 22:30:01 (9728): Guest Log: -rwxrwxrwx. 1 root root 217752494 Oct  8 07:03 ATLAS.root_0
2025-10-08 22:30:01 (9728): Guest Log: -rwxrwxrwx. 1 root root 192710215 Oct  8 11:30 HITS.pool.root.1
2025-10-08 22:30:01 (9728): Guest Log: -rwxrwxrwx. 1 root root      8839 Oct  8 07:03 init_data.xml
2025-10-08 22:30:01 (9728): Guest Log: -rwxrwxrwx. 1 root root    565603 Oct  8 07:02 input.tar.gz
2025-10-08 22:30:01 (9728): Guest Log: -rwxrwxrwx. 1 root root   2498560 Oct  8 11:30 result.tar.gz
2025-10-08 22:30:01 (9728): Guest Log: -rwxrwxrwx. 1 root root     15120 Oct  8 07:02 start_atlas.sh
2025-10-08 22:30:01 (9728): Guest Log:  *** Success! Shutting down the machine. ***
2025-10-08 22:30:01 (9728): VM Completion File Detected.
2025-10-08 22:30:01 (9728): Powering off VM.
2025-10-08 22:30:02 (9728): Successfully stopped VM.
2025-10-08 22:30:02 (9728): Deregistering VM. (boinc_49fa3af9c3683ad7, slot#12)
2025-10-08 22:30:02 (9728): Removing network bandwidth throttle group from VM.
2025-10-08 22:30:02 (9728): Removing VM from VirtualBox.
2025-10-08 22:30:07 (9728): called boinc_finish(0)

</stderr_txt>
]]>

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