Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
01:53:46 (3338): wrapper (7.7.26015): starting
01:53:46 (3338): wrapper: running run_atlas (--nthreads 12)
[2025-10-08 01:53:46] Arguments: --nthreads 12
[2025-10-08 01:53:46] Threads: 12
[2025-10-08 01:53:46] Checking for CVMFS
[2025-10-08 01:53:46] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-08 01:53:46] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-08 01:53:46] Running cvmfs_config stat atlas.cern.ch
[2025-10-08 01:53:46] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-08 01:53:46] 2.11.2.0 25590 117408 92848 151459 1 57 19081671 20275200 1 130560 2 72224842 99.991 3744034 21395 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-08 01:53:46] CVMFS is ok
[2025-10-08 01:53:46] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-08 01:53:46] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-08 01:53:46] Further information can be found at the LHC@home message board.
[2025-10-08 01:53:46] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-08 01:53:46] Checking for apptainer binary...
[2025-10-08 01:53:46] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-08 01:53:46] Running /usr/bin/apptainer --version
[2025-10-08 01:53:46] apptainer version 1.3.2-1.el7
[2025-10-08 01:53:46] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-08 01:53:48] c-205-24.aglt2.org
[2025-10-08 01:53:48] apptainer works
[2025-10-08 01:53:48] Set ATHENA_PROC_NUMBER=12
[2025-10-08 01:53:48] Set ATHENA_CORE_NUMBER=12
[2025-10-08 01:53:48] Starting ATLAS job with PandaID=6826241838
[2025-10-08 01:53:48] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-08 03:25:19]  *** The last 200 lines of the pilot log: ***
[2025-10-08 03:25:19]  replicas=None
[2025-10-08 03:25:19]  scope=mc23_13p6TeV
[2025-10-08 03:25:19]  status=None
[2025-10-08 03:25:19]  status_code=0
[2025-10-08 03:25:19]  storage_token=
[2025-10-08 03:25:19]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6826241838/log.46373048._073618.job.log.tgz.1
[2025-10-08 03:25:19]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/8e/78/log.46373048._073618.job.log.tgz.1
[2025-10-08 03:25:19]  workdir=None
[2025-10-08 03:25:19] ]
[2025-10-08 03:25:19] 2025-10-08 07:24:35,689 | INFO     | transferring file log.46373048._073618.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6826241838/log.46373048._073618.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-10-08 03:25:19] 2025-10-08 07:24:35,690 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6826241838/log.46373048._073618.job.log.tgz.1 /tmp/boinchome/slots/0/log.46373048._073618.job
[2025-10-08 03:25:19] 2025-10-08 07:24:35,711 | INFO     | adding to output.list: log.46373048._073618.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/8e/78/log.46373048._073618.job.log.tg
[2025-10-08 03:25:19] 2025-10-08 07:24:35,712 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-08 03:25:19] 2025-10-08 07:24:35,712 | INFO     | summary of transferred files:
[2025-10-08 03:25:19] 2025-10-08 07:24:35,712 | INFO     |  -- lfn=log.46373048._073618.job.log.tgz.1, status_code=0, status=transferred
[2025-10-08 03:25:19] 2025-10-08 07:24:35,712 | INFO     | stage-out finished correctly
[2025-10-08 03:25:19] 2025-10-08 07:24:35,829 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-08 03:25:19] 2025-10-08 07:24:35,965 | WARNING  | process 14322 can no longer be monitored (due to stat problems) - aborting
[2025-10-08 03:25:19] 2025-10-08 07:24:35,965 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6826241838/memory_monitor_summary.json (trf name=prmon)
[2025-10-08 03:25:19] 2025-10-08 07:24:36,053 | INFO     | number of running child processes to parent process 14322: 1
[2025-10-08 03:25:19] 2025-10-08 07:24:36,054 | INFO     | maximum number of monitored processes: 6
[2025-10-08 03:25:19] 2025-10-08 07:24:36,260 | INFO     | time since job start (5433s) is within the limit (172800.0s)
[2025-10-08 03:25:19] 2025-10-08 07:24:36,903 | INFO     | job 6826241838 has state=finished
[2025-10-08 03:25:19] 2025-10-08 07:24:36,903 | INFO     | preparing for final server update for job 6826241838 in state='finished'
[2025-10-08 03:25:19] 2025-10-08 07:24:36,904 | INFO     | this job has now completed (state=finished)
[2025-10-08 03:25:19] 2025-10-08 07:24:36,904 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-08 03:25:19] 2025-10-08 07:24:36,904 | INFO     | log transfer has been attempted: DONE
[2025-10-08 03:25:19] 2025-10-08 07:24:36,904 | INFO     | job 6826241838 has finished - writing final server update
[2025-10-08 03:25:19] 2025-10-08 07:24:36,904 | INFO     | total number of processed events: 400 (read)
[2025-10-08 03:25:19] 2025-10-08 07:24:36,905 | INFO     | executing command: lscpu
[2025-10-08 03:25:19] 2025-10-08 07:24:36,932 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-08 03:25:19] 2025-10-08 07:24:38,266 | INFO     | time since job start (5435s) is within the limit (172800.0s)
[2025-10-08 03:25:19] 2025-10-08 07:24:38,556 | INFO     | monitor loop #405: job 0:6826241838 is in state 'finished'
[2025-10-08 03:25:19] 2025-10-08 07:24:38,556 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-08 03:25:19] 2025-10-08 07:24:40,269 | INFO     | time since job start (5437s) is within the limit (172800.0s)
[2025-10-08 03:25:19] 2025-10-08 07:24:41,057 | INFO     | monitor loop #406: job 0:6826241838 is in state 'finished'
[2025-10-08 03:25:19] 2025-10-08 07:24:41,057 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-08 03:25:19] 2025-10-08 07:24:41,645 | INFO     | CPU arch script returned: x86-64-v2
[2025-10-08 03:25:19] 2025-10-08 07:24:41,649 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1773.4166666666667
[2025-10-08 03:25:19] 2025-10-08 07:24:41,650 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6826241838/memory_monitor_summary.json (trf name=prmon)
[2025-10-08 03:25:19] 2025-10-08 07:24:41,651 | INFO     | extracted standard info from prmon json
[2025-10-08 03:25:19] 2025-10-08 07:24:41,651 | INFO     | extracted standard memory fields from prmon json
[2025-10-08 03:25:19] 2025-10-08 07:24:41,651 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-08 03:25:19] 2025-10-08 07:24:41,651 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-08 03:25:19] 2025-10-08 07:24:41,651 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-08 03:25:19] 2025-10-08 07:24:41,653 | INFO     | fitting pss+swap vs Time
[2025-10-08 03:25:19] 2025-10-08 07:24:41,653 | INFO     | sum of square deviations: 170944600.5
[2025-10-08 03:25:19] 2025-10-08 07:24:41,654 | INFO     | sum of deviations: -5644927098.500002
[2025-10-08 03:25:19] 2025-10-08 07:24:41,654 | INFO     | mean x: 1759905647.5
[2025-10-08 03:25:19] 2025-10-08 07:24:41,654 | INFO     | mean y: 2707746.548780488
[2025-10-08 03:25:19] 2025-10-08 07:24:41,654 | INFO     | -- intersect: 58118255422.91978
[2025-10-08 03:25:19] 2025-10-08 07:24:41,654 | INFO     | intersect: 58118255422.91978
[2025-10-08 03:25:19] 2025-10-08 07:24:41,655 | INFO     | chi2: 0.0670812718715465
[2025-10-08 03:25:19] 2025-10-08 07:24:41,655 | INFO     | -- intersect: 58118255422.91978
[2025-10-08 03:25:19] 2025-10-08 07:24:41,655 | INFO     | current memory leak: -33.02 B/s (using 82 data points, chi2=0.07)
[2025-10-08 03:25:19] 2025-10-08 07:24:41,655 | INFO     | could have reported an average CPU frequency of 2052 MHz (6 samples)
[2025-10-08 03:25:19] 2025-10-08 07:24:41,655 | INFO     | ..............................
[2025-10-08 03:25:19] 2025-10-08 07:24:41,655 | INFO     | . Timing measurements:
[2025-10-08 03:25:19] 2025-10-08 07:24:41,655 | INFO     | . get job = 0 s
[2025-10-08 03:25:19] 2025-10-08 07:24:41,656 | INFO     | . initial setup = 2 s
[2025-10-08 03:25:19] 2025-10-08 07:24:41,656 | INFO     | . payload setup = 7 s
[2025-10-08 03:25:19] 2025-10-08 07:24:41,656 | INFO     | . stage-in = 0 s
[2025-10-08 03:25:19] 2025-10-08 07:24:41,656 | INFO     | . payload execution = 5404 s
[2025-10-08 03:25:19] 2025-10-08 07:24:41,656 | INFO     | . stage-out = 0 s
[2025-10-08 03:25:19] 2025-10-08 07:24:41,656 | INFO     | . log creation = 0 s
[2025-10-08 03:25:19] 2025-10-08 07:24:41,656 | INFO     | ..............................
[2025-10-08 03:25:19] 2025-10-08 07:24:41,949 | INFO     | 
[2025-10-08 03:25:19] 2025-10-08 07:24:41,950 | INFO     | job summary report
[2025-10-08 03:25:19] 2025-10-08 07:24:41,956 | INFO     | --------------------------------------------------
[2025-10-08 03:25:19] 2025-10-08 07:24:41,956 | INFO     | PanDA job id: 6826241838
[2025-10-08 03:25:19] 2025-10-08 07:24:41,956 | INFO     | task id: 46373048
[2025-10-08 03:25:19] 2025-10-08 07:24:41,956 | INFO     | errors: (none)
[2025-10-08 03:25:19] 2025-10-08 07:24:41,957 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-08 03:25:19] 2025-10-08 07:24:41,957 | INFO     | pilot state: finished 
[2025-10-08 03:25:19] 2025-10-08 07:24:41,957 | INFO     | transexitcode: 0
[2025-10-08 03:25:19] 2025-10-08 07:24:41,957 | INFO     | exeerrorcode: 0
[2025-10-08 03:25:19] 2025-10-08 07:24:41,957 | INFO     | exeerrordiag: 
[2025-10-08 03:25:19] 2025-10-08 07:24:41,957 | INFO     | exitcode: 0
[2025-10-08 03:25:19] 2025-10-08 07:24:41,958 | INFO     | exitmsg: OK
[2025-10-08 03:25:19] 2025-10-08 07:24:41,958 | INFO     | cpuconsumptiontime: 59864 s
[2025-10-08 03:25:19] 2025-10-08 07:24:41,958 | INFO     | nevents: 400
[2025-10-08 03:25:19] 2025-10-08 07:24:41,958 | INFO     | neventsw: 0
[2025-10-08 03:25:19] 2025-10-08 07:24:41,958 | INFO     | pid: 14322
[2025-10-08 03:25:19] 2025-10-08 07:24:41,958 | INFO     | pgrp: 14322
[2025-10-08 03:25:19] 2025-10-08 07:24:41,958 | INFO     | corecount: 12
[2025-10-08 03:25:19] 2025-10-08 07:24:41,958 | INFO     | event service: False
[2025-10-08 03:25:19] 2025-10-08 07:24:41,958 | INFO     | sizes: {0: 2348841, 5: 2349103, 11: 2349159, 5415: 2375674, 5416: 2384728, 5422: 2384866}
[2025-10-08 03:25:19] 2025-10-08 07:24:41,959 | INFO     | --------------------------------------------------
[2025-10-08 03:25:19] 2025-10-08 07:24:41,959 | INFO     | 
[2025-10-08 03:25:19] 2025-10-08 07:24:41,959 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-10-08 03:25:19] 2025-10-08 07:24:41,983 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-08 03:25:19] 2025-10-08 07:24:41,983 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-08 03:25:19] 2025-10-08 07:24:41,983 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-08 03:25:19] 2025-10-08 07:24:41,984 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-08 03:25:19] 2025-10-08 07:24:41,984 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-08 03:25:19] 2025-10-08 07:24:41,984 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-08 03:25:19] 2025-10-08 07:24:41,984 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-08 03:25:19] 2025-10-08 07:24:41,984 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-08 03:25:19] 2025-10-08 07:24:41,984 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-08 03:25:19] 2025-10-08 07:24:41,984 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-08 03:25:19] 2025-10-08 07:24:41,985 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-08 03:25:19] 2025-10-08 07:24:41,985 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-08 03:25:19] 2025-10-08 07:24:41,985 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-08 03:25:19] 2025-10-08 07:24:41,985 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-08 03:25:19] 2025-10-08 07:24:41,985 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-08 03:25:19] 2025-10-08 07:24:41,985 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-08 03:25:19] 2025-10-08 07:24:41,986 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-08 03:25:19] 2025-10-08 07:24:41,986 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-08 03:25:19] 2025-10-08 07:24:41,986 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-08 03:25:19] 2025-10-08 07:24:41,986 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-08 03:25:19] 2025-10-08 07:24:41,986 | INFO     | job 6826241838 has completed (purged errors)
[2025-10-08 03:25:19] 2025-10-08 07:24:41,987 | INFO     | overall cleanup function is called
[2025-10-08 03:25:19] 2025-10-08 07:24:42,995 | INFO     | --- collectZombieJob: --- 10, [14322]
[2025-10-08 03:25:19] 2025-10-08 07:24:42,995 | INFO     | zombie collector waiting for pid 14322
[2025-10-08 03:25:19] 2025-10-08 07:24:42,995 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-08 03:25:19] 2025-10-08 07:24:42,995 | INFO     | collected zombie processes
[2025-10-08 03:25:19] 2025-10-08 07:24:42,995 | INFO     | will attempt to kill all subprocesses of pid=14322
[2025-10-08 03:25:19] 2025-10-08 07:24:43,087 | INFO     | process IDs to be killed: [14322] (in reverse order)
[2025-10-08 03:25:19] 2025-10-08 07:24:43,137 | WARNING  | found no corresponding commands to process id(s)
[2025-10-08 03:25:19] 2025-10-08 07:24:43,137 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-08 03:25:19] 2025-10-08 07:24:43,140 | INFO     | did not find any defunct processes belonging to 14322
[2025-10-08 03:25:19] 2025-10-08 07:24:43,142 | INFO     | did not find any defunct processes belonging to 14322
[2025-10-08 03:25:19] 2025-10-08 07:24:43,142 | INFO     | ready for new job
[2025-10-08 03:25:19] 2025-10-08 07:24:43,143 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-08 03:25:19] 2025-10-08 07:24:43,144 | INFO     | ***************************************
[2025-10-08 03:25:19] 2025-10-08 07:24:43,144 | INFO     | ***  PanDA Pilot version 3.10.5.57  ***
[2025-10-08 03:25:19] 2025-10-08 07:24:43,144 | INFO     | ***************************************
[2025-10-08 03:25:19] 2025-10-08 07:24:43,144 | INFO     | 
[2025-10-08 03:25:19] 2025-10-08 07:24:43,145 | INFO     | architecture information:
[2025-10-08 03:25:19] 2025-10-08 07:24:43,145 | INFO     | executing command: cat /etc/os-release
[2025-10-08 03:25:19] 2025-10-08 07:24:43,159 | INFO     | cat /etc/os-release:
[2025-10-08 03:25:19] NAME="CentOS Linux"
[2025-10-08 03:25:19] VERSION="7 (Core)"
[2025-10-08 03:25:19] ID="centos"
[2025-10-08 03:25:19] ID_LIKE="rhel fedora"
[2025-10-08 03:25:19] VERSION_ID="7"
[2025-10-08 03:25:19] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-08 03:25:19] ANSI_COLOR="0;31"
[2025-10-08 03:25:19] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-08 03:25:19] HOME_URL="https://www.centos.org/"
[2025-10-08 03:25:19] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-08 03:25:19] 
[2025-10-08 03:25:19] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-08 03:25:19] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-08 03:25:19] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-08 03:25:19] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-08 03:25:19] 
[2025-10-08 03:25:19] 2025-10-08 07:24:43,160 | INFO     | ***************************************
[2025-10-08 03:25:19] 2025-10-08 07:24:43,663 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-10-08 03:25:19] 2025-10-08 07:24:43,682 | INFO     | sufficient remaining disk space (29369565184 B)
[2025-10-08 03:25:19] 2025-10-08 07:24:43,682 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-08 03:25:19] 2025-10-08 07:24:43,682 | INFO     | current server update state: UPDATING_FINAL
[2025-10-08 03:25:19] 2025-10-08 07:24:43,682 | INFO     | update_server=False
[2025-10-08 03:25:19] 2025-10-08 07:24:43,683 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-08 03:25:19] 2025-10-08 07:24:43,683 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-08 03:25:19] 2025-10-08 07:24:43,811 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-08 03:25:19] 2025-10-08 07:24:44,315 | INFO     | all data control threads have been joined
[2025-10-08 03:25:19] 2025-10-08 07:24:44,561 | INFO     | all payload control threads have been joined
[2025-10-08 03:25:19] 2025-10-08 07:24:44,565 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-08 03:25:19] 2025-10-08 07:24:44,565 | INFO     | aborting loop
[2025-10-08 03:25:19] 2025-10-08 07:24:44,688 | INFO     | [job] retrieve thread has finished
[2025-10-08 03:25:19] 2025-10-08 07:24:44,688 | INFO     | [job] queue monitor thread has finished
[2025-10-08 03:25:19] 2025-10-08 07:24:44,919 | INFO     | [payload] validate_pre thread has finished
[2025-10-08 03:25:19] 2025-10-08 07:24:44,969 | INFO     | all job control threads have been joined
[2025-10-08 03:25:19] 2025-10-08 07:24:45,024 | INFO     | [payload] failed_post thread has finished
[2025-10-08 03:25:19] 2025-10-08 07:24:45,321 | INFO     | [data] control thread has finished
[2025-10-08 03:25:19] 2025-10-08 07:24:45,452 | INFO     | [data] copytool_in thread has finished
[2025-10-08 03:25:19] 2025-10-08 07:24:45,508 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-08 03:25:19] 2025-10-08 07:24:45,563 | INFO     | [payload] validate_post thread has finished
[2025-10-08 03:25:19] 2025-10-08 07:24:45,566 | INFO     | [payload] control thread has finished
[2025-10-08 03:25:19] 2025-10-08 07:24:45,570 | INFO     | [job] job monitor thread has finished
[2025-10-08 03:25:19] 2025-10-08 07:24:45,816 | INFO     | [data] copytool_out thread has finished
[2025-10-08 03:25:19] 2025-10-08 07:24:45,974 | INFO     | [job] control thread has finished
[2025-10-08 03:25:19] 2025-10-08 07:24:45,975 | INFO     | [payload] execute_payloads thread has finished
[2025-10-08 03:25:19] 2025-10-08 07:24:46,007 | INFO     | [job] create_data_payload thread has finished
[2025-10-08 03:25:19] 2025-10-08 07:24:46,045 | INFO     | [job] validate thread has finished
[2025-10-08 03:25:19] 2025-10-08 07:24:46,423 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-08 03:25:19] 2025-10-08 07:24:50,426 | INFO     | [data] queue_monitor thread has finished
[2025-10-08 03:25:19] 2025-10-08 07:25:11,733 | INFO     | [monitor] cgroup control has ended
[2025-10-08 03:25:19] 2025-10-08 07:25:13,476 | INFO     | PID=7841 has CPU usage=3.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-10-08 03:25:19] 2025-10-08 07:25:13,476 | INFO     | found 0 job(s) in 20 queues
[2025-10-08 03:25:19] 2025-10-08 07:25:13,476 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-08 03:25:19] 2025-10-08 07:25:13,476 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-08 03:25:19] 2025-10-08 07:25:13,763 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140639742261056)>', '<ExcThread(monitor, started 140639157081856)>']
[2025-10-08 03:25:19] 2025-10-08 07:25:14,481 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-08 03:25:19] 2025-10-08 07:25:14,481 | INFO     | [monitor] control thread has ended
[2025-10-08 03:25:19] 2025-10-08 07:25:18,788 | INFO     | all workflow threads have been joined
[2025-10-08 03:25:19] 2025-10-08 07:25:18,788 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-08 03:25:19] 2025-10-08 07:25:18,789 | INFO     | traces error code: 0
[2025-10-08 03:25:19] 2025-10-08 07:25:18,789 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-08 03:25:19] 2025-10-08 07:25:18,881 [wrapper] ==== pilot stdout END ====
[2025-10-08 03:25:19] 2025-10-08 07:25:18,885 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-08 03:25:19] 2025-10-08 07:25:18,889 [wrapper] pilotpid: 7841
[2025-10-08 03:25:19] 2025-10-08 07:25:18,893 [wrapper] Pilot exit status: 0
[2025-10-08 03:25:19] 2025-10-08 07:25:18,908 [wrapper] pandaids: 6826241838
[2025-10-08 03:25:19] 2025-10-08 07:25:18,950 [wrapper] cleanup supervisor_pilot 30632 7842
[2025-10-08 03:25:19] 2025-10-08 07:25:18,954 [wrapper] Test setup, not cleaning
[2025-10-08 03:25:19] 2025-10-08 07:25:18,958 [wrapper] apfmon messages muted
[2025-10-08 03:25:19] 2025-10-08 07:25:18,962 [wrapper] ==== wrapper stdout END ====
[2025-10-08 03:25:19] 2025-10-08 07:25:18,966 [wrapper] ==== wrapper stderr END ====
[2025-10-08 03:25:19]  *** Error codes and diagnostics ***
[2025-10-08 03:25:19]     "exeErrorCode": 0,
[2025-10-08 03:25:19]     "exeErrorDiag": "",
[2025-10-08 03:25:19]     "pilotErrorCode": 0,
[2025-10-08 03:25:19]     "pilotErrorDiag": "",
[2025-10-08 03:25:19]  *** Listing of results directory ***
[2025-10-08 03:25:19] total 410072
[2025-10-08 03:25:19] -rw-r--r-- 1 boincer umatlas    552446 Sep 30 20:15 pilot3.tar.gz
[2025-10-08 03:25:19] -rwx------ 1 boincer umatlas     36292 Sep 30 20:31 runpilot2-wrapper.sh
[2025-10-08 03:25:19] -rw-r--r-- 1 boincer umatlas      5112 Sep 30 20:31 queuedata.json
[2025-10-08 03:25:19] -rw-r--r-- 1 boincer umatlas       100 Oct  8 01:53 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-08 03:25:19] -rwxr-xr-x 1 boincer umatlas      7986 Oct  8 01:53 run_atlas
[2025-10-08 03:25:19] -rw-r--r-- 1 boincer umatlas       105 Oct  8 01:53 job.xml
[2025-10-08 03:25:19] -rw-r--r-- 2 boincer umatlas 219737073 Oct  8 01:53 EVNT.46373045._002435.pool.root.1
[2025-10-08 03:25:19] -rw-r--r-- 2 boincer umatlas     15120 Oct  8 01:53 start_atlas.sh
[2025-10-08 03:25:19] drwxrwx--x 2 boincer umatlas      4096 Oct  8 01:53 shared
[2025-10-08 03:25:19] -rw-r--r-- 2 boincer umatlas    565602 Oct  8 01:53 input.tar.gz
[2025-10-08 03:25:19] -rw-r--r-- 1 boincer umatlas         0 Oct  8 01:53 boinc_lockfile
[2025-10-08 03:25:19] -rw-r--r-- 1 boincer umatlas      2538 Oct  8 01:53 pandaJob.out
[2025-10-08 03:25:19] -rw------- 1 boincer umatlas    979841 Oct  8 01:54 agis_schedconf.cvmfs.json
[2025-10-08 03:25:19] -rw------- 1 boincer umatlas   1560401 Oct  8 01:54 agis_ddmendpoints.agis.ALL.json
[2025-10-08 03:25:19] drwx------ 4 boincer umatlas      4096 Oct  8 01:54 pilot3
[2025-10-08 03:25:19] -rw-r--r-- 1 boincer umatlas      5953 Oct  8 03:20 init_data.xml
[2025-10-08 03:25:19] -rw------- 1 boincer umatlas 193927048 Oct  8 03:24 HITS.46373048._073618.pool.root.1
[2025-10-08 03:25:19] -rw------- 1 boincer umatlas        95 Oct  8 03:24 pilot_heartbeat.json
[2025-10-08 03:25:19] -rw-r--r-- 1 boincer umatlas       529 Oct  8 03:24 boinc_task_state.xml
[2025-10-08 03:25:19] -rw------- 1 boincer umatlas      1048 Oct  8 03:24 memory_monitor_summary.json
[2025-10-08 03:25:19] -rw------- 1 boincer umatlas    405690 Oct  8 03:24 log.46373048._073618.job.log.tgz.1
[2025-10-08 03:25:19] -rw------- 1 boincer umatlas      7850 Oct  8 03:24 heartbeat.json
[2025-10-08 03:25:19] -rw-r--r-- 1 boincer umatlas        27 Oct  8 03:24 wrapper_checkpoint.txt
[2025-10-08 03:25:19] -rw-r--r-- 1 boincer umatlas      8192 Oct  8 03:24 boinc_mmap_file
[2025-10-08 03:25:19] -rw------- 1 boincer umatlas      4745 Oct  8 03:25 pilotlog.txt
[2025-10-08 03:25:19] -rw------- 1 boincer umatlas    773930 Oct  8 03:25 log.46373048._073618.job.log.1
[2025-10-08 03:25:19] -rw------- 1 boincer umatlas       357 Oct  8 03:25 output.list
[2025-10-08 03:25:19] -rw-r--r-- 1 boincer umatlas       620 Oct  8 03:25 runtime_log
[2025-10-08 03:25:19] -rw------- 1 boincer umatlas   1198080 Oct  8 03:25 result.tar.gz
[2025-10-08 03:25:19] -rw-r--r-- 1 boincer umatlas      8705 Oct  8 03:25 runtime_log.err
[2025-10-08 03:25:19] -rw------- 1 boincer umatlas       659 Oct  8 03:25 eJqNDmyvzN8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmCTANDm8sllNn.diag
[2025-10-08 03:25:19] -rw-r--r-- 1 boincer umatlas     21843 Oct  8 03:25 stderr.txt
[2025-10-08 03:25:19] HITS file was successfully produced:
[2025-10-08 03:25:19] -rw------- 1 boincer umatlas 193927048 Oct  8 03:24 shared/HITS.pool.root.1
[2025-10-08 03:25:19]  *** Contents of shared directory: ***
[2025-10-08 03:25:19] total 405720
[2025-10-08 03:25:19] -rw-r--r-- 2 boincer umatlas 219737073 Oct  8 01:53 ATLAS.root_0
[2025-10-08 03:25:19] -rw-r--r-- 2 boincer umatlas     15120 Oct  8 01:53 start_atlas.sh
[2025-10-08 03:25:19] -rw-r--r-- 2 boincer umatlas    565602 Oct  8 01:53 input.tar.gz
[2025-10-08 03:25:19] -rw------- 1 boincer umatlas 193927048 Oct  8 03:24 HITS.pool.root.1
[2025-10-08 03:25:19] -rw------- 1 boincer umatlas   1198080 Oct  8 03:25 result.tar.gz
03:25:21 (3338): run_atlas exited; CPU time 59828.528360
03:25:21 (3338): called boinc_finish(0)

</stderr_txt>
]]>

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