Stderr output

<core_client_version>8.2.5</core_client_version>
<![CDATA[
<stderr_txt>
00:24:04 (849834): wrapper (7.7.26015): starting
00:24:04 (849834): wrapper: running run_atlas (--nthreads 12)
[2025-10-08 00:24:04] Arguments: --nthreads 12
[2025-10-08 00:24:04] Threads: 12
[2025-10-08 00:24:04] Checking for CVMFS
[2025-10-08 00:24:04] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-08 00:24:04] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-08 00:24:04] Running cvmfs_config stat atlas.cern.ch
[2025-10-08 00:24:04] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-08 00:24:04] 2.13.2.0 849712 0 24360 151459 3 1 5016627 6144000 0 130560 0 0 0.000 1292 1106 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
[2025-10-08 00:24:04] CVMFS is ok
[2025-10-08 00:24:04] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-08 00:24:04] Small home clusters do not require a local http proxy but it is suggested if
[2025-10-08 00:24:04] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2025-10-08 00:24:04] Further information can be found at the LHC@home message board.
[2025-10-08 00:24:04] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-08 00:24:04] Checking for apptainer binary...
[2025-10-08 00:24:04] apptainer is not installed, using version from CVMFS
[2025-10-08 00:24:04] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-08 00:24:06] XeonFire
[2025-10-08 00:24:06] apptainer works
[2025-10-08 00:24:06] Set ATHENA_PROC_NUMBER=12
[2025-10-08 00:24:06] Set ATHENA_CORE_NUMBER=12
[2025-10-08 00:24:06] Starting ATLAS job with PandaID=6830881231
[2025-10-08 00:24:06] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc-client/slots/6 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-08 01:04:47]  *** The last 200 lines of the pilot log: ***
[2025-10-08 01:04:47]  status=None
[2025-10-08 01:04:47]  status_code=0
[2025-10-08 01:04:47]  storage_token=
[2025-10-08 01:04:47]  surl=/var/lib/boinc-client/slots/6/PanDA_Pilot-6830881231/log.46376905._075853.job.log.tgz.1
[2025-10-08 01:04:47]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/a6/66/log.46376905._075853.job.log.tgz.1
[2025-10-08 01:04:47]  workdir=None
[2025-10-08 01:04:47] ]
[2025-10-08 01:04:47] 2025-10-08 06:03:54,854 | INFO     | transferring file log.46376905._075853.job.log.tgz.1 from /var/lib/boinc-client/slots/6/PanDA_Pilot-6830881231/log.46376905._075853.job.log.tgz.1 to /var/lib/boinc
[2025-10-08 01:04:47] 2025-10-08 06:03:54,854 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc-client/slots/6/PanDA_Pilot-6830881231/log.46376905._075853.job.log.tgz.1 /var/lib/boinc-client/slots/6/log.463769
[2025-10-08 01:04:47] 2025-10-08 06:03:54,873 | INFO     | adding to output.list: log.46376905._075853.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/a6/66/log.46376905._075853.job.log.tg
[2025-10-08 01:04:47] 2025-10-08 06:03:54,874 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-08 01:04:47] 2025-10-08 06:03:54,874 | INFO     | summary of transferred files:
[2025-10-08 01:04:47] 2025-10-08 06:03:54,874 | INFO     |  -- lfn=log.46376905._075853.job.log.tgz.1, status_code=0, status=transferred
[2025-10-08 01:04:47] 2025-10-08 06:03:54,874 | INFO     | stage-out finished correctly
[2025-10-08 01:04:47] 2025-10-08 06:03:55,256 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-08 01:04:47] 2025-10-08 06:03:55,899 | INFO     | job 6830881231 has state=finished
[2025-10-08 01:04:47] 2025-10-08 06:03:55,900 | INFO     | preparing for final server update for job 6830881231 in state='finished'
[2025-10-08 01:04:47] 2025-10-08 06:03:55,901 | INFO     | this job has now completed (state=finished)
[2025-10-08 01:04:47] 2025-10-08 06:03:55,901 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-08 01:04:47] 2025-10-08 06:03:55,901 | INFO     | log transfer has been attempted: DONE
[2025-10-08 01:04:47] 2025-10-08 06:03:55,901 | INFO     | job 6830881231 has finished - writing final server update
[2025-10-08 01:04:47] 2025-10-08 06:03:55,901 | INFO     | total number of processed events: 400 (read)
[2025-10-08 01:04:47] 2025-10-08 06:03:55,902 | INFO     | executing command: lscpu
[2025-10-08 01:04:47] 2025-10-08 06:03:55,950 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-08 01:04:47] 2025-10-08 06:03:56,429 | WARNING  | process 872192 can no longer be monitored (due to stat problems) - aborting
[2025-10-08 01:04:47] 2025-10-08 06:03:56,430 | INFO     | using path: /var/lib/boinc-client/slots/6/PanDA_Pilot-6830881231/memory_monitor_summary.json (trf name=prmon)
[2025-10-08 01:04:47] 2025-10-08 06:03:56,463 | INFO     | time since job start (2358s) is within the limit (172800.0s)
[2025-10-08 01:04:47] 2025-10-08 06:03:56,676 | INFO     | number of running child processes to parent process 872192: 1
[2025-10-08 01:04:47] 2025-10-08 06:03:56,676 | INFO     | maximum number of monitored processes: 6
[2025-10-08 01:04:47] 2025-10-08 06:03:58,469 | INFO     | time since job start (2360s) is within the limit (172800.0s)
[2025-10-08 01:04:47] 2025-10-08 06:03:59,179 | INFO     | monitor loop #179: job 0:6830881231 is in state 'finished'
[2025-10-08 01:04:47] 2025-10-08 06:03:59,179 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-08 01:04:47] 2025-10-08 06:04:00,474 | INFO     | time since job start (2362s) is within the limit (172800.0s)
[2025-10-08 01:04:47] 2025-10-08 06:04:01,682 | INFO     | monitor loop #180: job 0:6830881231 is in state 'finished'
[2025-10-08 01:04:47] 2025-10-08 06:04:01,682 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-08 01:04:47] 2025-10-08 06:04:02,480 | INFO     | time since job start (2364s) is within the limit (172800.0s)
[2025-10-08 01:04:47] 2025-10-08 06:04:03,693 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-08 01:04:47] 2025-10-08 06:04:03,709 | INFO     | found 44 cores (22 cores per socket, 2 sockets) HT, CPU MHz: 1873.2507613636362
[2025-10-08 01:04:47] 2025-10-08 06:04:03,727 | INFO     | using path: /var/lib/boinc-client/slots/6/PanDA_Pilot-6830881231/memory_monitor_summary.json (trf name=prmon)
[2025-10-08 01:04:47] 2025-10-08 06:04:03,728 | INFO     | extracted standard info from prmon json
[2025-10-08 01:04:47] 2025-10-08 06:04:03,728 | INFO     | extracted standard memory fields from prmon json
[2025-10-08 01:04:47] 2025-10-08 06:04:03,728 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-08 01:04:47] 2025-10-08 06:04:03,728 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-08 01:04:47] 2025-10-08 06:04:03,729 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-08 01:04:47] 2025-10-08 06:04:03,730 | INFO     | fitting pss+swap vs Time
[2025-10-08 01:04:47] 2025-10-08 06:04:03,730 | INFO     | sum of square deviations: 10150888.0
[2025-10-08 01:04:47] 2025-10-08 06:04:03,731 | INFO     | sum of deviations: -369423228.5
[2025-10-08 01:04:47] 2025-10-08 06:04:03,731 | INFO     | mean x: 1759902355.5
[2025-10-08 01:04:47] 2025-10-08 06:04:03,731 | INFO     | mean y: 2841996.71875
[2025-10-08 01:04:47] 2025-10-08 06:04:03,731 | INFO     | -- intersect: 64051308496.74956
[2025-10-08 01:04:47] 2025-10-08 06:04:03,731 | INFO     | intersect: 64051308496.74956
[2025-10-08 01:04:47] 2025-10-08 06:04:03,731 | INFO     | chi2: 0.0026749923103633077
[2025-10-08 01:04:47] 2025-10-08 06:04:03,732 | INFO     | -- intersect: 64051308496.74956
[2025-10-08 01:04:47] 2025-10-08 06:04:03,732 | INFO     | current memory leak: -36.39 B/s (using 32 data points, chi2=0.00)
[2025-10-08 01:04:47] 2025-10-08 06:04:03,732 | INFO     | could have reported an average CPU frequency of 1768 MHz (5 samples)
[2025-10-08 01:04:47] 2025-10-08 06:04:03,732 | INFO     | ..............................
[2025-10-08 01:04:47] 2025-10-08 06:04:03,732 | INFO     | . Timing measurements:
[2025-10-08 01:04:47] 2025-10-08 06:04:03,733 | INFO     | . get job = 0 s
[2025-10-08 01:04:47] 2025-10-08 06:04:03,733 | INFO     | . initial setup = 13 s
[2025-10-08 01:04:47] 2025-10-08 06:04:03,733 | INFO     | . payload setup = 6 s
[2025-10-08 01:04:47] 2025-10-08 06:04:03,733 | INFO     | . stage-in = 0 s
[2025-10-08 01:04:47] 2025-10-08 06:04:03,733 | INFO     | . payload execution = 2328 s
[2025-10-08 01:04:47] 2025-10-08 06:04:03,733 | INFO     | . stage-out = 0 s
[2025-10-08 01:04:47] 2025-10-08 06:04:03,733 | INFO     | . log creation = 0 s
[2025-10-08 01:04:47] 2025-10-08 06:04:03,733 | INFO     | ..............................
[2025-10-08 01:04:47] 2025-10-08 06:04:03,816 | INFO     | 
[2025-10-08 01:04:47] 2025-10-08 06:04:03,816 | INFO     | job summary report
[2025-10-08 01:04:47] 2025-10-08 06:04:03,817 | INFO     | --------------------------------------------------
[2025-10-08 01:04:47] 2025-10-08 06:04:03,817 | INFO     | PanDA job id: 6830881231
[2025-10-08 01:04:47] 2025-10-08 06:04:03,817 | INFO     | task id: 46376905
[2025-10-08 01:04:47] 2025-10-08 06:04:03,817 | INFO     | errors: (none)
[2025-10-08 01:04:47] 2025-10-08 06:04:03,817 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-08 01:04:47] 2025-10-08 06:04:03,817 | INFO     | pilot state: finished 
[2025-10-08 01:04:47] 2025-10-08 06:04:03,817 | INFO     | transexitcode: 0
[2025-10-08 01:04:47] 2025-10-08 06:04:03,817 | INFO     | exeerrorcode: 0
[2025-10-08 01:04:47] 2025-10-08 06:04:03,817 | INFO     | exeerrordiag: 
[2025-10-08 01:04:47] 2025-10-08 06:04:03,818 | INFO     | exitcode: 0
[2025-10-08 01:04:47] 2025-10-08 06:04:03,818 | INFO     | exitmsg: OK
[2025-10-08 01:04:47] 2025-10-08 06:04:03,818 | INFO     | cpuconsumptiontime: 24242 s
[2025-10-08 01:04:47] 2025-10-08 06:04:03,818 | INFO     | nevents: 400
[2025-10-08 01:04:47] 2025-10-08 06:04:03,818 | INFO     | neventsw: 0
[2025-10-08 01:04:47] 2025-10-08 06:04:03,818 | INFO     | pid: 872192
[2025-10-08 01:04:47] 2025-10-08 06:04:03,818 | INFO     | pgrp: 872192
[2025-10-08 01:04:47] 2025-10-08 06:04:03,818 | INFO     | corecount: 12
[2025-10-08 01:04:47] 2025-10-08 06:04:03,818 | INFO     | event service: False
[2025-10-08 01:04:47] 2025-10-08 06:04:03,819 | INFO     | sizes: {0: 2348602, 1: 2348801, 5: 2349063, 12: 2349119, 2339: 2374097, 2341: 2383293, 2350: 2383463}
[2025-10-08 01:04:47] 2025-10-08 06:04:03,819 | INFO     | --------------------------------------------------
[2025-10-08 01:04:47] 2025-10-08 06:04:03,819 | INFO     | 
[2025-10-08 01:04:47] 2025-10-08 06:04:03,819 | INFO     | executing command: ls -lF /var/lib/boinc-client/slots/6
[2025-10-08 01:04:47] 2025-10-08 06:04:03,842 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-08 01:04:47] 2025-10-08 06:04:03,842 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-08 01:04:47] 2025-10-08 06:04:03,842 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-08 01:04:47] 2025-10-08 06:04:03,843 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-08 01:04:47] 2025-10-08 06:04:03,843 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-08 01:04:47] 2025-10-08 06:04:03,843 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-08 01:04:47] 2025-10-08 06:04:03,843 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-08 01:04:47] 2025-10-08 06:04:03,843 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-08 01:04:47] 2025-10-08 06:04:03,843 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-08 01:04:47] 2025-10-08 06:04:03,843 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-08 01:04:47] 2025-10-08 06:04:03,844 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-08 01:04:47] 2025-10-08 06:04:03,844 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-08 01:04:47] 2025-10-08 06:04:03,844 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-08 01:04:47] 2025-10-08 06:04:03,844 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-08 01:04:47] 2025-10-08 06:04:03,844 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-08 01:04:47] 2025-10-08 06:04:03,844 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-08 01:04:47] 2025-10-08 06:04:03,844 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-08 01:04:47] 2025-10-08 06:04:03,844 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-08 01:04:47] 2025-10-08 06:04:03,844 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-08 01:04:47] 2025-10-08 06:04:03,845 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-08 01:04:47] 2025-10-08 06:04:03,845 | INFO     | job 6830881231 has completed (purged errors)
[2025-10-08 01:04:47] 2025-10-08 06:04:03,845 | INFO     | overall cleanup function is called
[2025-10-08 01:04:47] 2025-10-08 06:04:04,855 | INFO     | --- collectZombieJob: --- 10, [872192]
[2025-10-08 01:04:47] 2025-10-08 06:04:04,855 | INFO     | zombie collector waiting for pid 872192
[2025-10-08 01:04:47] 2025-10-08 06:04:04,855 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-08 01:04:47] 2025-10-08 06:04:04,856 | INFO     | collected zombie processes
[2025-10-08 01:04:47] 2025-10-08 06:04:04,856 | INFO     | will attempt to kill all subprocesses of pid=872192
[2025-10-08 01:04:47] 2025-10-08 06:04:05,150 | INFO     | process IDs to be killed: [872192] (in reverse order)
[2025-10-08 01:04:47] 2025-10-08 06:04:05,254 | WARNING  | found no corresponding commands to process id(s)
[2025-10-08 01:04:47] 2025-10-08 06:04:05,254 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-08 01:04:47] 2025-10-08 06:04:05,264 | INFO     | did not find any defunct processes belonging to 872192
[2025-10-08 01:04:47] 2025-10-08 06:04:05,273 | INFO     | did not find any defunct processes belonging to 872192
[2025-10-08 01:04:47] 2025-10-08 06:04:05,273 | INFO     | ready for new job
[2025-10-08 01:04:47] 2025-10-08 06:04:05,273 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-08 01:04:47] 2025-10-08 06:04:05,275 | INFO     | ***************************************
[2025-10-08 01:04:47] 2025-10-08 06:04:05,275 | INFO     | ***  PanDA Pilot version 3.10.5.57  ***
[2025-10-08 01:04:47] 2025-10-08 06:04:05,275 | INFO     | ***************************************
[2025-10-08 01:04:47] 2025-10-08 06:04:05,276 | INFO     | 
[2025-10-08 01:04:47] 2025-10-08 06:04:05,281 | INFO     | architecture information:
[2025-10-08 01:04:47] 2025-10-08 06:04:05,281 | INFO     | executing command: cat /etc/os-release
[2025-10-08 01:04:47] 2025-10-08 06:04:05,295 | INFO     | cat /etc/os-release:
[2025-10-08 01:04:47] NAME="CentOS Linux"
[2025-10-08 01:04:47] VERSION="7 (Core)"
[2025-10-08 01:04:47] ID="centos"
[2025-10-08 01:04:47] ID_LIKE="rhel fedora"
[2025-10-08 01:04:47] VERSION_ID="7"
[2025-10-08 01:04:47] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-08 01:04:47] ANSI_COLOR="0;31"
[2025-10-08 01:04:47] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-08 01:04:47] HOME_URL="https://www.centos.org/"
[2025-10-08 01:04:47] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-08 01:04:47] 
[2025-10-08 01:04:47] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-08 01:04:47] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-08 01:04:47] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-08 01:04:47] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-08 01:04:47] 
[2025-10-08 01:04:47] 2025-10-08 06:04:05,296 | INFO     | ***************************************
[2025-10-08 01:04:47] 2025-10-08 06:04:05,799 | INFO     | executing command: df -mP /var/lib/boinc-client/slots/6
[2025-10-08 01:04:47] 2025-10-08 06:04:05,816 | INFO     | sufficient remaining disk space (1823058427904 B)
[2025-10-08 01:04:47] 2025-10-08 06:04:05,816 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-08 01:04:47] 2025-10-08 06:04:05,817 | INFO     | current server update state: UPDATING_FINAL
[2025-10-08 01:04:47] 2025-10-08 06:04:05,817 | INFO     | update_server=False
[2025-10-08 01:04:47] 2025-10-08 06:04:05,817 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-08 01:04:47] 2025-10-08 06:04:05,817 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-08 01:04:47] 2025-10-08 06:04:05,818 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-08 01:04:47] 2025-10-08 06:04:05,818 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-08 01:04:47] 2025-10-08 06:04:05,818 | INFO     | aborting loop
[2025-10-08 01:04:47] 2025-10-08 06:04:05,852 | INFO     | all job control threads have been joined
[2025-10-08 01:04:47] 2025-10-08 06:04:05,863 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-08 01:04:47] 2025-10-08 06:04:05,967 | INFO     | all data control threads have been joined
[2025-10-08 01:04:47] 2025-10-08 06:04:06,762 | INFO     | all payload control threads have been joined
[2025-10-08 01:04:47] 2025-10-08 06:04:06,822 | INFO     | [job] retrieve thread has finished
[2025-10-08 01:04:47] 2025-10-08 06:04:06,823 | INFO     | [job] queue monitor thread has finished
[2025-10-08 01:04:47] 2025-10-08 06:04:06,824 | INFO     | [job] job monitor thread has finished
[2025-10-08 01:04:47] 2025-10-08 06:04:06,858 | INFO     | [job] control thread has finished
[2025-10-08 01:04:47] 2025-10-08 06:04:06,973 | INFO     | [data] control thread has finished
[2025-10-08 01:04:47] 2025-10-08 06:04:07,040 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-08 01:04:47] 2025-10-08 06:04:07,132 | INFO     | [payload] validate_post thread has finished
[2025-10-08 01:04:47] 2025-10-08 06:04:07,363 | INFO     | [payload] execute_payloads thread has finished
[2025-10-08 01:04:47] 2025-10-08 06:04:07,538 | INFO     | [job] validate thread has finished
[2025-10-08 01:04:47] 2025-10-08 06:04:07,767 | INFO     | [payload] control thread has finished
[2025-10-08 01:04:47] 2025-10-08 06:04:07,824 | INFO     | [data] copytool_out thread has finished
[2025-10-08 01:04:47] 2025-10-08 06:04:07,836 | INFO     | [job] create_data_payload thread has finished
[2025-10-08 01:04:47] 2025-10-08 06:04:07,964 | INFO     | [payload] validate_pre thread has finished
[2025-10-08 01:04:47] 2025-10-08 06:04:08,138 | INFO     | [payload] failed_post thread has finished
[2025-10-08 01:04:47] 2025-10-08 06:04:08,185 | INFO     | [data] copytool_in thread has finished
[2025-10-08 01:04:47] 2025-10-08 06:04:09,869 | INFO     | [data] queue_monitor thread has finished
[2025-10-08 01:04:47] 2025-10-08 06:04:35,909 | INFO     | PID=858176 has CPU usage=4.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-10-08 01:04:47] 2025-10-08 06:04:35,909 | INFO     | .. there are 3 such processes running
[2025-10-08 01:04:47] 2025-10-08 06:04:35,910 | INFO     | found 0 job(s) in 20 queues
[2025-10-08 01:04:47] 2025-10-08 06:04:35,910 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-08 01:04:47] 2025-10-08 06:04:35,910 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-08 01:04:47] 2025-10-08 06:04:40,354 | INFO     | [monitor] cgroup control has ended
[2025-10-08 01:04:47] 2025-10-08 06:04:41,971 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 133888920471360)>', '<ExcThread(monitor, started 133888089257728)>']
[2025-10-08 01:04:47] 2025-10-08 06:04:42,946 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-08 01:04:47] 2025-10-08 06:04:42,946 | INFO     | [monitor] control thread has ended
[2025-10-08 01:04:47] 2025-10-08 06:04:46,996 | INFO     | all workflow threads have been joined
[2025-10-08 01:04:47] 2025-10-08 06:04:46,997 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-08 01:04:47] 2025-10-08 06:04:46,998 | INFO     | traces error code: 0
[2025-10-08 01:04:47] 2025-10-08 06:04:46,998 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-08 01:04:47] 2025-10-08 06:04:47,102 [wrapper] ==== pilot stdout END ====
[2025-10-08 01:04:47] 2025-10-08 06:04:47,106 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-08 01:04:47] 2025-10-08 06:04:47,109 [wrapper] pilotpid: 858176
[2025-10-08 01:04:47] 2025-10-08 06:04:47,112 [wrapper] Pilot exit status: 0
[2025-10-08 01:04:47] 2025-10-08 06:04:47,125 [wrapper] pandaids: 6830881231
[2025-10-08 01:04:47] 2025-10-08 06:04:47,178 [wrapper] cleanup supervisor_pilot  908049 858177
[2025-10-08 01:04:47] 2025-10-08 06:04:47,182 [wrapper] Test setup, not cleaning
[2025-10-08 01:04:47] 2025-10-08 06:04:47,185 [wrapper] apfmon messages muted
[2025-10-08 01:04:47] 2025-10-08 06:04:47,188 [wrapper] ==== wrapper stdout END ====
[2025-10-08 01:04:47] 2025-10-08 06:04:47,191 [wrapper] ==== wrapper stderr END ====
[2025-10-08 01:04:47]  *** Error codes and diagnostics ***
[2025-10-08 01:04:47]     "exeErrorCode": 0,
[2025-10-08 01:04:47]     "exeErrorDiag": "",
[2025-10-08 01:04:47]     "pilotErrorCode": 0,
[2025-10-08 01:04:47]     "pilotErrorDiag": "",
[2025-10-08 01:04:47]  *** Listing of results directory ***
[2025-10-08 01:04:47] total 386248
[2025-10-08 01:04:47] -rw-r--r-- 1 mark mark    552446 Oct  4 22:58 pilot3.tar.gz
[2025-10-08 01:04:47] -rw-r--r-- 1 mark mark      5112 Oct  4 23:08 queuedata.json
[2025-10-08 01:04:47] -rwx------ 1 mark mark     36292 Oct  4 23:10 runpilot2-wrapper.sh
[2025-10-08 01:04:47] -rw-rw-r-- 1 mark mark       100 Oct  8 00:24 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-08 01:04:47] -rwxr-xr-x 1 mark mark      7986 Oct  8 00:24 run_atlas
[2025-10-08 01:04:47] -rw-rw-r-- 1 mark mark       105 Oct  8 00:24 job.xml
[2025-10-08 01:04:47] -rw-r--r-- 2 mark mark    565609 Oct  8 00:24 input.tar.gz
[2025-10-08 01:04:47] -rw-r--r-- 2 mark mark 216048997 Oct  8 00:24 EVNT.46376901._001362.pool.root.1
[2025-10-08 01:04:47] -rw-r--r-- 2 mark mark     15120 Oct  8 00:24 start_atlas.sh
[2025-10-08 01:04:47] drwxrwx--x 2 mark mark      4096 Oct  8 00:24 shared
[2025-10-08 01:04:47] -rw-rw-r-- 1 mark mark      9229 Oct  8 00:24 init_data.xml
[2025-10-08 01:04:47] -rw-rw-r-- 1 mark mark         0 Oct  8 00:24 boinc_setup_complete
[2025-10-08 01:04:47] -rw-rw-r-- 1 mark mark         0 Oct  8 00:24 boinc_lockfile
[2025-10-08 01:04:47] -rw-rw-r-- 1 mark mark      2519 Oct  8 00:24 pandaJob.out
[2025-10-08 01:04:47] -rw------- 1 mark mark    979841 Oct  8 00:24 agis_schedconf.cvmfs.json
[2025-10-08 01:04:47] -rw------- 1 mark mark   1560401 Oct  8 00:24 agis_ddmendpoints.agis.ALL.json
[2025-10-08 01:04:47] drwx------ 4 mark mark      4096 Oct  8 00:24 pilot3
[2025-10-08 01:04:47] -rw------- 1 mark mark 174094439 Oct  8 01:03 HITS.46376905._075853.pool.root.1
[2025-10-08 01:04:47] -rw-rw-r-- 1 mark mark       529 Oct  8 01:03 boinc_task_state.xml
[2025-10-08 01:04:47] -rw------- 1 mark mark      1026 Oct  8 01:03 memory_monitor_summary.json
[2025-10-08 01:04:47] -rw------- 1 mark mark    361641 Oct  8 01:03 log.46376905._075853.job.log.tgz.1
[2025-10-08 01:04:47] -rw------- 1 mark mark      7778 Oct  8 01:04 heartbeat.json
[2025-10-08 01:04:47] -rw------- 1 mark mark        95 Oct  8 01:04 pilot_heartbeat.json
[2025-10-08 01:04:47] -rw-rw-r-- 1 mark mark        27 Oct  8 01:04 wrapper_checkpoint.txt
[2025-10-08 01:04:47] -rw-rw-r-- 1 mark mark      8192 Oct  8 01:04 boinc_mmap_file
[2025-10-08 01:04:47] -rw------- 1 mark mark      4831 Oct  8 01:04 pilotlog.txt
[2025-10-08 01:04:47] -rw------- 1 mark mark    376773 Oct  8 01:04 log.46376905._075853.job.log.1
[2025-10-08 01:04:47] -rw------- 1 mark mark       357 Oct  8 01:04 output.list
[2025-10-08 01:04:47] -rw-rw-r-- 1 mark mark       620 Oct  8 01:04 runtime_log
[2025-10-08 01:04:47] -rw------- 1 mark mark    757760 Oct  8 01:04 result.tar.gz
[2025-10-08 01:04:47] -rw-rw-r-- 1 mark mark      8759 Oct  8 01:04 runtime_log.err
[2025-10-08 01:04:47] -rw------- 1 mark mark       644 Oct  8 01:04 a6oLDmKGVP8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmGzNNDmcqgymm.diag
[2025-10-08 01:04:47] -rw-rw-r-- 1 mark mark     22116 Oct  8 01:04 stderr.txt
[2025-10-08 01:04:47] HITS file was successfully produced:
[2025-10-08 01:04:47] -rw------- 1 mark mark 174094439 Oct  8 01:03 shared/HITS.pool.root.1
[2025-10-08 01:04:47]  *** Contents of shared directory: ***
[2025-10-08 01:04:47] total 382324
[2025-10-08 01:04:47] -rw-r--r-- 2 mark mark    565609 Oct  8 00:24 input.tar.gz
[2025-10-08 01:04:47] -rw-r--r-- 2 mark mark 216048997 Oct  8 00:24 ATLAS.root_0
[2025-10-08 01:04:47] -rw-r--r-- 2 mark mark     15120 Oct  8 00:24 start_atlas.sh
[2025-10-08 01:04:47] -rw------- 1 mark mark 174094439 Oct  8 01:03 HITS.pool.root.1
[2025-10-08 01:04:47] -rw------- 1 mark mark    757760 Oct  8 01:04 result.tar.gz
01:04:48 (849834): run_atlas exited; CPU time 24300.138109
01:04:48 (849834): called boinc_finish(0)

</stderr_txt>
]]>

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