Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
07:56:38 (1743573): wrapper (7.7.26015): starting
07:56:38 (1743573): wrapper: running run_atlas (--nthreads 4)
[2025-10-08 07:56:38] Arguments: --nthreads 4
[2025-10-08 07:56:38] Threads: 4
[2025-10-08 07:56:38] Checking for CVMFS
[2025-10-08 07:56:39] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-08 07:56:39] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-08 07:56:39] Running cvmfs_config stat atlas.cern.ch
[2025-10-08 07:56:39] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-08 07:56:39] 2.9.2.0 734607 2524 92792 151459 1 57 30987937 36864001 0 130560 0 2636687 99.993 84340 872 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-08 07:56:39] CVMFS is ok
[2025-10-08 07:56:39] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-08 07:56:39] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-08 07:56:39] Further information can be found at the LHC@home message board.
[2025-10-08 07:56:39] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-08 07:56:39] Checking for apptainer binary...
[2025-10-08 07:56:39] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-08 07:56:39] Running /usr/bin/apptainer --version
[2025-10-08 07:56:39] apptainer version 1.4.1-1.1
[2025-10-08 07:56:39] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-08 07:56:39] thA305a
[2025-10-08 07:56:39] apptainer works
[2025-10-08 07:56:39] Set ATHENA_PROC_NUMBER=4
[2025-10-08 07:56:39] Set ATHENA_CORE_NUMBER=4
[2025-10-08 07:56:39] Starting ATLAS job with PandaID=6829875044
[2025-10-08 07:56:39] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-08 09:01:58]  *** The last 200 lines of the pilot log: ***
[2025-10-08 09:01:58] 2025-10-08 07:01:02,427 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-08 09:01:58] 2025-10-08 07:01:02,428 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-08 09:01:58] 2025-10-08 07:01:02,428 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-08 09:01:58] 2025-10-08 07:01:02,428 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-08 09:01:58] 2025-10-08 07:01:02,428 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-08 09:01:58] 2025-10-08 07:01:02,428 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-08 09:01:58] 2025-10-08 07:01:02,428 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-08 09:01:58] 2025-10-08 07:01:02,428 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-08 09:01:58] 2025-10-08 07:01:02,428 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-08 09:01:58] 2025-10-08 07:01:02,428 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-08 09:01:58] 2025-10-08 07:01:02,428 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-08 09:01:58] 2025-10-08 07:01:02,428 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-08 09:01:58] 2025-10-08 07:01:02,428 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-08 09:01:58] 2025-10-08 07:01:02,428 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-08 09:01:58] 2025-10-08 07:01:02,428 | INFO     | job 6829875044 has completed (purged errors)
[2025-10-08 09:01:58] 2025-10-08 07:01:02,428 | INFO     | overall cleanup function is called
[2025-10-08 09:01:58] 2025-10-08 07:01:03,435 | INFO     | --- collectZombieJob: --- 10, [1753908]
[2025-10-08 09:01:58] 2025-10-08 07:01:03,435 | INFO     | zombie collector waiting for pid 1753908
[2025-10-08 09:01:58] 2025-10-08 07:01:03,435 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-08 09:01:58] 2025-10-08 07:01:03,435 | INFO     | collected zombie processes
[2025-10-08 09:01:58] 2025-10-08 07:01:03,435 | INFO     | will attempt to kill all subprocesses of pid=1753908
[2025-10-08 09:01:58] 2025-10-08 07:01:03,480 | INFO     | process IDs to be killed: [1753908] (in reverse order)
[2025-10-08 09:01:58] 2025-10-08 07:01:03,514 | WARNING  | found no corresponding commands to process id(s)
[2025-10-08 09:01:58] 2025-10-08 07:01:03,514 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-08 09:01:58] 2025-10-08 07:01:03,516 | INFO     | did not find any defunct processes belonging to 1753908
[2025-10-08 09:01:58] 2025-10-08 07:01:03,517 | INFO     | did not find any defunct processes belonging to 1753908
[2025-10-08 09:01:58] 2025-10-08 07:01:03,517 | INFO     | ready for new job
[2025-10-08 09:01:58] 2025-10-08 07:01:03,517 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-08 09:01:58] 2025-10-08 07:01:03,518 | INFO     | ***************************************
[2025-10-08 09:01:58] 2025-10-08 07:01:03,518 | INFO     | ***  PanDA Pilot version 3.10.5.57  ***
[2025-10-08 09:01:58] 2025-10-08 07:01:03,518 | INFO     | ***************************************
[2025-10-08 09:01:58] 2025-10-08 07:01:03,518 | INFO     | 
[2025-10-08 09:01:58] 2025-10-08 07:01:03,519 | INFO     | architecture information:
[2025-10-08 09:01:58] 2025-10-08 07:01:03,519 | INFO     | executing command: cat /etc/os-release
[2025-10-08 09:01:58] 2025-10-08 07:01:03,533 | INFO     | cat /etc/os-release:
[2025-10-08 09:01:58] NAME="CentOS Linux"
[2025-10-08 09:01:58] VERSION="7 (Core)"
[2025-10-08 09:01:58] ID="centos"
[2025-10-08 09:01:58] ID_LIKE="rhel fedora"
[2025-10-08 09:01:58] VERSION_ID="7"
[2025-10-08 09:01:58] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-08 09:01:58] ANSI_COLOR="0;31"
[2025-10-08 09:01:58] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-08 09:01:58] HOME_URL="https://www.centos.org/"
[2025-10-08 09:01:58] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-08 09:01:58] 
[2025-10-08 09:01:58] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-08 09:01:58] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-08 09:01:58] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-08 09:01:58] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-08 09:01:58] 
[2025-10-08 09:01:58] 2025-10-08 07:01:03,533 | INFO     | ***************************************
[2025-10-08 09:01:58] 2025-10-08 07:01:04,036 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-08 09:01:58] 2025-10-08 07:01:04,054 | INFO     | sufficient remaining disk space (330768056320 B)
[2025-10-08 09:01:58] 2025-10-08 07:01:04,054 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-08 09:01:58] 2025-10-08 07:01:04,054 | INFO     | current server update state: UPDATING_FINAL
[2025-10-08 09:01:58] 2025-10-08 07:01:04,054 | INFO     | update_server=False
[2025-10-08 09:01:58] 2025-10-08 07:01:04,054 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-08 09:01:58] 2025-10-08 07:01:04,055 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-10-08 09:01:58] 2025-10-08 07:01:04,055 | INFO     | found 0 job(s) in 20 queues
[2025-10-08 09:01:58] 2025-10-08 07:01:04,055 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-08 09:01:58] 2025-10-08 07:01:04,055 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-08 09:01:58] 2025-10-08 07:01:04,055 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-08 09:01:58] 2025-10-08 07:01:04,055 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-08 09:01:58] 2025-10-08 07:01:04,244 | INFO     | all job control threads have been joined
[2025-10-08 09:01:58] 2025-10-08 07:01:04,516 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-10-08 09:01:58] 2025-10-08 07:01:04,516 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-10-08 09:01:58] 2025-10-08 07:01:04,516 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-08 09:01:58] 2025-10-08 07:01:04,516 | INFO     | will abort loop
[2025-10-08 09:01:58] 2025-10-08 07:01:04,538 | INFO     | all payload control threads have been joined
[2025-10-08 09:01:58] 2025-10-08 07:01:04,831 | INFO     | all data control threads have been joined
[2025-10-08 09:01:58] 2025-10-08 07:01:05,060 | INFO     | [job] retrieve thread has finished
[2025-10-08 09:01:58] 2025-10-08 07:01:05,061 | INFO     | [job] queue monitor thread has finished
[2025-10-08 09:01:58] 2025-10-08 07:01:05,202 | INFO     | [data] copytool_in thread has finished
[2025-10-08 09:01:58] 2025-10-08 07:01:05,250 | INFO     | [job] control thread has finished
[2025-10-08 09:01:58] 2025-10-08 07:01:05,388 | INFO     | [payload] validate_post thread has finished
[2025-10-08 09:01:58] 2025-10-08 07:01:05,522 | INFO     | [job] job monitor thread has finished
[2025-10-08 09:01:58] 2025-10-08 07:01:05,544 | INFO     | [payload] control thread has finished
[2025-10-08 09:01:58] 2025-10-08 07:01:05,837 | INFO     | [data] control thread has finished
[2025-10-08 09:01:58] 2025-10-08 07:01:05,917 | INFO     | [payload] execute_payloads thread has finished
[2025-10-08 09:01:58] 2025-10-08 07:01:05,987 | INFO     | [job] validate thread has finished
[2025-10-08 09:01:58] 2025-10-08 07:01:06,034 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-08 09:01:58] 2025-10-08 07:01:06,061 | INFO     | [data] copytool_out thread has finished
[2025-10-08 09:01:58] 2025-10-08 07:01:06,103 | INFO     | [job] create_data_payload thread has finished
[2025-10-08 09:01:58] 2025-10-08 07:01:06,186 | INFO     | [payload] validate_pre thread has finished
[2025-10-08 09:01:58] 2025-10-08 07:01:06,198 | INFO     | [payload] failed_post thread has finished
[2025-10-08 09:01:58] 2025-10-08 07:01:06,503 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-08 09:01:58] 2025-10-08 07:01:10,041 | INFO     | [data] queue_monitor thread has finished
[2025-10-08 09:01:58] 2025-10-08 07:01:52,539 | INFO     | [monitor] cgroup control has ended
[2025-10-08 09:01:58] 2025-10-08 07:01:53,646 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140256928769856)>', '<ExcThread(monitor, started 140255780927232)>']
[2025-10-08 09:01:58] 2025-10-08 07:01:54,322 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-08 09:01:58] 2025-10-08 07:01:54,322 | INFO     | [monitor] control thread has ended
[2025-10-08 09:01:58] 2025-10-08 07:01:58,672 | INFO     | all workflow threads have been joined
[2025-10-08 09:01:58] 2025-10-08 07:01:58,673 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-08 09:01:58] 2025-10-08 07:01:58,673 | INFO     | traces error code: 0
[2025-10-08 09:01:58] 2025-10-08 07:01:58,673 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-08 09:01:58] 2025-10-08 07:01:58,752 [wrapper] ==== pilot stdout END ====
[2025-10-08 09:01:58] 2025-10-08 07:01:58,757 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-08 09:01:58] 2025-10-08 07:01:58,761 [wrapper] pilotpid: 1747361
[2025-10-08 09:01:58] 2025-10-08 07:01:58,765 [wrapper] Pilot exit status: 0
[2025-10-08 09:01:58] 2025-10-08 07:01:58,777 [wrapper] pandaids: 6829875044
[2025-10-08 09:01:58] 2025-10-08 07:01:58,799 [wrapper] cleanup supervisor_pilot 1763740 1747362
[2025-10-08 09:01:58] 2025-10-08 07:01:58,803 [wrapper] Test setup, not cleaning
[2025-10-08 09:01:58] 2025-10-08 07:01:58,807 [wrapper] apfmon messages muted
[2025-10-08 09:01:58] 2025-10-08 07:01:58,811 [wrapper] ==== wrapper stdout END ====
[2025-10-08 09:01:58] 2025-10-08 07:01:58,814 [wrapper] ==== wrapper stderr END ====
[2025-10-08 09:01:58]  *** Error codes and diagnostics ***
[2025-10-08 09:01:58]     "exeErrorCode": 65,
[2025-10-08 09:01:58]     "exeErrorDiag": "EVNTtoHITS got a SIGHUP signal (exit code 129)",
[2025-10-08 09:01:58]     "pilotErrorCode": 1305,
[2025-10-08 09:01:58]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: EVNTtoHITS got a SIGHUP signal (exit code 129)",
[2025-10-08 09:01:58]  *** Listing of results directory ***
[2025-10-08 09:01:58] total 214396
[2025-10-08 09:01:58] -rw-r--r-- 1 boinc boinc    552446 Oct  4 18:54 pilot3.tar.gz
[2025-10-08 09:01:58] -rw-r--r-- 1 boinc boinc      5112 Oct  4 18:55 queuedata.json
[2025-10-08 09:01:58] -rwx------ 1 boinc boinc     36292 Oct  4 18:56 runpilot2-wrapper.sh
[2025-10-08 09:01:58] -rw-r--r-- 1 boinc boinc       100 Oct  8 07:56 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-08 09:01:58] -rwxr-xr-x 1 boinc boinc      7986 Oct  8 07:56 run_atlas
[2025-10-08 09:01:58] -rw-r--r-- 1 boinc boinc       105 Oct  8 07:56 job.xml
[2025-10-08 09:01:58] -rw-r--r-- 2 boinc boinc 213996351 Oct  8 07:56 EVNT.46376901._002297.pool.root.1
[2025-10-08 09:01:58] -rw-r--r-- 2 boinc boinc    565600 Oct  8 07:56 input.tar.gz
[2025-10-08 09:01:58] -rw-r--r-- 2 boinc boinc     15120 Oct  8 07:56 start_atlas.sh
[2025-10-08 09:01:58] drwxrwx--x 2 boinc boinc      4096 Oct  8 07:56 shared
[2025-10-08 09:01:58] -rw-r--r-- 1 boinc boinc         0 Oct  8 07:56 boinc_setup_complete
[2025-10-08 09:01:58] -rw-r--r-- 1 boinc boinc      6377 Oct  8 07:56 init_data.xml
[2025-10-08 09:01:58] -rw-r--r-- 1 boinc boinc         0 Oct  8 07:56 boinc_lockfile
[2025-10-08 09:01:58] -rw-r--r-- 1 boinc boinc      2519 Oct  8 07:56 pandaJob.out
[2025-10-08 09:01:58] -rw------- 1 boinc boinc    979841 Oct  8 07:56 agis_schedconf.cvmfs.json
[2025-10-08 09:01:58] -rw------- 1 boinc boinc   1560401 Oct  8 07:56 agis_ddmendpoints.agis.ALL.json
[2025-10-08 09:01:58] drwx------ 4 boinc boinc      4096 Oct  8 07:56 pilot3
[2025-10-08 09:01:58] -rw-r--r-- 1 boinc boinc       529 Oct  8 08:58 boinc_task_state.xml
[2025-10-08 09:01:58] -rw------- 1 boinc boinc      1018 Oct  8 08:58 memory_monitor_summary.json
[2025-10-08 09:01:58] -rw------- 1 boinc boinc    246422 Oct  8 08:59 log.46376905._063517.job.log.tgz.1
[2025-10-08 09:01:58] -rw------- 1 boinc boinc        95 Oct  8 09:00 pilot_heartbeat.json
[2025-10-08 09:01:58] -rw------- 1 boinc boinc      8681 Oct  8 09:01 heartbeat.json
[2025-10-08 09:01:58] -rw-r--r-- 1 boinc boinc      8192 Oct  8 09:01 boinc_mmap_file
[2025-10-08 09:01:58] -rw-r--r-- 1 boinc boinc        27 Oct  8 09:01 wrapper_checkpoint.txt
[2025-10-08 09:01:58] -rw------- 1 boinc boinc      4742 Oct  8 09:01 pilotlog.txt
[2025-10-08 09:01:58] -rw------- 1 boinc boinc    580087 Oct  8 09:01 log.46376905._063517.job.log.1
[2025-10-08 09:01:58] -rw------- 1 boinc boinc       188 Oct  8 09:01 output.list
[2025-10-08 09:01:58] -rw-r--r-- 1 boinc boinc       620 Oct  8 09:01 runtime_log
[2025-10-08 09:01:58] -rw------- 1 boinc boinc    849920 Oct  8 09:01 result.tar.gz
[2025-10-08 09:01:58] -rw-r--r-- 1 boinc boinc      8630 Oct  8 09:01 runtime_log.err
[2025-10-08 09:01:58] -rw------- 1 boinc boinc       660 Oct  8 09:01 SNrKDmIjKP8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmr1LNDmphOOYn.diag
[2025-10-08 09:01:58] -rw-r--r-- 1 boinc boinc     12619 Oct  8 09:01 stderr.txt
[2025-10-08 09:01:58] No HITS result produced
[2025-10-08 09:01:58]  *** Contents of shared directory: ***
[2025-10-08 09:01:58] total 210392
[2025-10-08 09:01:58] -rw-r--r-- 2 boinc boinc 213996351 Oct  8 07:56 ATLAS.root_0
[2025-10-08 09:01:58] -rw-r--r-- 2 boinc boinc    565600 Oct  8 07:56 input.tar.gz
[2025-10-08 09:01:58] -rw-r--r-- 2 boinc boinc     15120 Oct  8 07:56 start_atlas.sh
[2025-10-08 09:01:58] -rw------- 1 boinc boinc    849920 Oct  8 09:01 result.tar.gz
09:02:00 (1743573): run_atlas exited; CPU time 13887.603490
09:02:00 (1743573): called boinc_finish(0)

</stderr_txt>
]]>

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