Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
06:41:30 (1124219): wrapper (7.7.26015): starting
06:41:30 (1124219): wrapper: running run_atlas (--nthreads 4)
[2025-10-08 06:41:30] Arguments: --nthreads 4
[2025-10-08 06:41:30] Threads: 4
[2025-10-08 06:41:30] Checking for CVMFS
[2025-10-08 06:41:30] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-08 06:41:30] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-08 06:41:30] Running cvmfs_config stat atlas.cern.ch
[2025-10-08 06:41:30] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-08 06:41:30] 2.9.2.0 162565 2449 98360 151458 1 57 28799111 36864000 0 130560 0 2519163 99.993 84328 755 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-08 06:41:30] CVMFS is ok
[2025-10-08 06:41:30] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-08 06:41:30] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-08 06:41:30] Further information can be found at the LHC@home message board.
[2025-10-08 06:41:30] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-08 06:41:30] Checking for apptainer binary...
[2025-10-08 06:41:30] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-08 06:41:30] Running /usr/bin/apptainer --version
[2025-10-08 06:41:30] apptainer version 1.4.1-1.1
[2025-10-08 06:41:30] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-08 06:41:30] thA334
[2025-10-08 06:41:30] apptainer works
[2025-10-08 06:41:30] Set ATHENA_PROC_NUMBER=4
[2025-10-08 06:41:30] Set ATHENA_CORE_NUMBER=4
[2025-10-08 06:41:30] Starting ATLAS job with PandaID=6830320658
[2025-10-08 06:41:30] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-08 07:47:59]  *** The last 200 lines of the pilot log: ***
[2025-10-08 07:47:59] 2025-10-08 05:47:26,509 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-08 07:47:59] 2025-10-08 05:47:26,509 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-08 07:47:59] 2025-10-08 05:47:26,509 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-08 07:47:59] 2025-10-08 05:47:26,509 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-08 07:47:59] 2025-10-08 05:47:26,509 | INFO     | job 6830320658 has completed (purged errors)
[2025-10-08 07:47:59] 2025-10-08 05:47:26,509 | INFO     | overall cleanup function is called
[2025-10-08 07:47:59] 2025-10-08 05:47:27,515 | INFO     | --- collectZombieJob: --- 10, [1134610]
[2025-10-08 07:47:59] 2025-10-08 05:47:27,516 | INFO     | zombie collector waiting for pid 1134610
[2025-10-08 07:47:59] 2025-10-08 05:47:27,516 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-08 07:47:59] 2025-10-08 05:47:27,516 | INFO     | collected zombie processes
[2025-10-08 07:47:59] 2025-10-08 05:47:27,516 | INFO     | will attempt to kill all subprocesses of pid=1134610
[2025-10-08 07:47:59] 2025-10-08 05:47:27,559 | INFO     | process IDs to be killed: [1134610] (in reverse order)
[2025-10-08 07:47:59] 2025-10-08 05:47:27,590 | WARNING  | found no corresponding commands to process id(s)
[2025-10-08 07:47:59] 2025-10-08 05:47:27,590 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-08 07:47:59] 2025-10-08 05:47:27,591 | INFO     | did not find any defunct processes belonging to 1134610
[2025-10-08 07:47:59] 2025-10-08 05:47:27,593 | INFO     | did not find any defunct processes belonging to 1134610
[2025-10-08 07:47:59] 2025-10-08 05:47:27,593 | INFO     | ready for new job
[2025-10-08 07:47:59] 2025-10-08 05:47:27,593 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-08 07:47:59] 2025-10-08 05:47:27,594 | INFO     | ***************************************
[2025-10-08 07:47:59] 2025-10-08 05:47:27,594 | INFO     | ***  PanDA Pilot version 3.10.5.57  ***
[2025-10-08 07:47:59] 2025-10-08 05:47:27,594 | INFO     | ***************************************
[2025-10-08 07:47:59] 2025-10-08 05:47:27,594 | INFO     | 
[2025-10-08 07:47:59] 2025-10-08 05:47:27,594 | INFO     | architecture information:
[2025-10-08 07:47:59] 2025-10-08 05:47:27,594 | INFO     | executing command: cat /etc/os-release
[2025-10-08 07:47:59] 2025-10-08 05:47:27,607 | INFO     | cat /etc/os-release:
[2025-10-08 07:47:59] NAME="CentOS Linux"
[2025-10-08 07:47:59] VERSION="7 (Core)"
[2025-10-08 07:47:59] ID="centos"
[2025-10-08 07:47:59] ID_LIKE="rhel fedora"
[2025-10-08 07:47:59] VERSION_ID="7"
[2025-10-08 07:47:59] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-08 07:47:59] ANSI_COLOR="0;31"
[2025-10-08 07:47:59] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-08 07:47:59] HOME_URL="https://www.centos.org/"
[2025-10-08 07:47:59] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-08 07:47:59] 
[2025-10-08 07:47:59] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-08 07:47:59] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-08 07:47:59] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-08 07:47:59] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-08 07:47:59] 
[2025-10-08 07:47:59] 2025-10-08 05:47:27,607 | INFO     | ***************************************
[2025-10-08 07:47:59] 2025-10-08 05:47:28,110 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-08 07:47:59] 2025-10-08 05:47:28,128 | INFO     | sufficient remaining disk space (232511242240 B)
[2025-10-08 07:47:59] 2025-10-08 05:47:28,128 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-08 07:47:59] 2025-10-08 05:47:28,128 | INFO     | current server update state: UPDATING_FINAL
[2025-10-08 07:47:59] 2025-10-08 05:47:28,128 | INFO     | update_server=False
[2025-10-08 07:47:59] 2025-10-08 05:47:28,128 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-08 07:47:59] 2025-10-08 05:47:28,128 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-08 07:47:59] 2025-10-08 05:47:28,128 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-08 07:47:59] 2025-10-08 05:47:28,128 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-08 07:47:59] 2025-10-08 05:47:28,290 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-08 07:47:59] 2025-10-08 05:47:28,290 | INFO     | aborting loop
[2025-10-08 07:47:59] 2025-10-08 05:47:28,498 | INFO     | all data control threads have been joined
[2025-10-08 07:47:59] 2025-10-08 05:47:28,735 | INFO     | all payload control threads have been joined
[2025-10-08 07:47:59] 2025-10-08 05:47:28,810 | INFO     | all job control threads have been joined
[2025-10-08 07:47:59] 2025-10-08 05:47:29,134 | INFO     | [job] retrieve thread has finished
[2025-10-08 07:47:59] 2025-10-08 05:47:29,134 | INFO     | [job] queue monitor thread has finished
[2025-10-08 07:47:59] 2025-10-08 05:47:29,151 | INFO     | [payload] validate_post thread has finished
[2025-10-08 07:47:59] 2025-10-08 05:47:29,172 | INFO     | [job] create_data_payload thread has finished
[2025-10-08 07:47:59] 2025-10-08 05:47:29,274 | INFO     | [payload] validate_pre thread has finished
[2025-10-08 07:47:59] 2025-10-08 05:47:29,296 | INFO     | [job] job monitor thread has finished
[2025-10-08 07:47:59] 2025-10-08 05:47:29,492 | INFO     | [data] copytool_in thread has finished
[2025-10-08 07:47:59] 2025-10-08 05:47:29,503 | INFO     | [data] control thread has finished
[2025-10-08 07:47:59] 2025-10-08 05:47:29,741 | INFO     | [payload] control thread has finished
[2025-10-08 07:47:59] 2025-10-08 05:47:29,748 | INFO     | [payload] failed_post thread has finished
[2025-10-08 07:47:59] 2025-10-08 05:47:29,813 | INFO     | [job] control thread has finished
[2025-10-08 07:47:59] 2025-10-08 05:47:30,013 | INFO     | [payload] execute_payloads thread has finished
[2025-10-08 07:47:59] 2025-10-08 05:47:30,135 | INFO     | [data] copytool_out thread has finished
[2025-10-08 07:47:59] 2025-10-08 05:47:30,554 | INFO     | [job] validate thread has finished
[2025-10-08 07:47:59] 2025-10-08 05:47:32,136 | INFO     | [data] queue_monitor thread has finished
[2025-10-08 07:47:59] 2025-10-08 05:47:38,747 | INFO     | job.realtimelogging is not enabled
[2025-10-08 07:47:59] 2025-10-08 05:47:39,753 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-08 07:47:59] 2025-10-08 05:47:43,907 | INFO     | [monitor] cgroup control has ended
[2025-10-08 07:47:59] 2025-10-08 05:47:44,781 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140019375236928)>', '<ExcThread(monitor, started 140018207155968)>']
[2025-10-08 07:47:59] 2025-10-08 05:47:49,806 | INFO     | all workflow threads have been joined
[2025-10-08 07:47:59] 2025-10-08 05:47:49,807 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-08 07:47:59] 2025-10-08 05:47:49,807 | INFO     | traces error code: 0
[2025-10-08 07:47:59] 2025-10-08 05:47:49,807 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-08 07:47:59] 2025-10-08 05:47:59,197 | INFO     | PID=1128025 has CPU usage=1.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-08 07:47:59] 2025-10-08 05:47:59,197 | INFO     | found 0 job(s) in 20 queues
[2025-10-08 07:47:59] 2025-10-08 05:47:59,197 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-08 07:47:59] 2025-10-08 05:47:59,197 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-08 07:47:59] 2025-10-08 05:47:59,197 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-08 07:47:59] 2025-10-08 05:47:59,198 | CRITICAL | thread 'MainThread' is not alive
[2025-10-08 07:47:59] 2025-10-08 05:47:59,198 | INFO     | [monitor] control thread has ended
[2025-10-08 07:47:59] 2025-10-08 05:47:59,261 [wrapper] ==== pilot stdout END ====
[2025-10-08 07:47:59] 2025-10-08 05:47:59,265 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-08 07:47:59] 2025-10-08 05:47:59,268 [wrapper] pilotpid: 1128025
[2025-10-08 07:47:59] 2025-10-08 05:47:59,272 [wrapper] Pilot exit status: 0
[2025-10-08 07:47:59] 2025-10-08 05:47:59,284 [wrapper] pandaids: 6830320658
[2025-10-08 07:47:59] 2025-10-08 05:47:59,304 [wrapper] cleanup supervisor_pilot 1144384 1128026
[2025-10-08 07:47:59] 2025-10-08 05:47:59,308 [wrapper] Test setup, not cleaning
[2025-10-08 07:47:59] 2025-10-08 05:47:59,311 [wrapper] apfmon messages muted
[2025-10-08 07:47:59] 2025-10-08 05:47:59,315 [wrapper] ==== wrapper stdout END ====
[2025-10-08 07:47:59] 2025-10-08 05:47:59,318 [wrapper] ==== wrapper stderr END ====
[2025-10-08 07:47:59]  *** Error codes and diagnostics ***
[2025-10-08 07:47:59]     "exeErrorCode": 0,
[2025-10-08 07:47:59]     "exeErrorDiag": "",
[2025-10-08 07:47:59]     "pilotErrorCode": 0,
[2025-10-08 07:47:59]     "pilotErrorDiag": "",
[2025-10-08 07:47:59]  *** Listing of results directory ***
[2025-10-08 07:47:59] total 396640
[2025-10-08 07:47:59] -rw-r--r-- 1 boinc boinc    552446 Oct  4 22:56 pilot3.tar.gz
[2025-10-08 07:47:59] -rwx------ 1 boinc boinc     36292 Oct  4 22:56 runpilot2-wrapper.sh
[2025-10-08 07:47:59] -rw-r--r-- 1 boinc boinc      5112 Oct  4 22:56 queuedata.json
[2025-10-08 07:47:59] -rw-r--r-- 1 boinc boinc       100 Oct  8 06:41 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-08 07:47:59] -rwxr-xr-x 1 boinc boinc      7986 Oct  8 06:41 run_atlas
[2025-10-08 07:47:59] -rw-r--r-- 1 boinc boinc       105 Oct  8 06:41 job.xml
[2025-10-08 07:47:59] -rw-r--r-- 2 boinc boinc 215463019 Oct  8 06:41 EVNT.46376901._002456.pool.root.1
[2025-10-08 07:47:59] -rw-r--r-- 2 boinc boinc    565601 Oct  8 06:41 input.tar.gz
[2025-10-08 07:47:59] -rw-r--r-- 2 boinc boinc     15120 Oct  8 06:41 start_atlas.sh
[2025-10-08 07:47:59] drwxrwx--x 2 boinc boinc      4096 Oct  8 06:41 shared
[2025-10-08 07:47:59] -rw-r--r-- 1 boinc boinc         0 Oct  8 06:41 boinc_setup_complete
[2025-10-08 07:47:59] -rw-r--r-- 1 boinc boinc      6370 Oct  8 06:41 init_data.xml
[2025-10-08 07:47:59] -rw-r--r-- 1 boinc boinc         0 Oct  8 06:41 boinc_lockfile
[2025-10-08 07:47:59] -rw-r--r-- 1 boinc boinc      2519 Oct  8 06:41 pandaJob.out
[2025-10-08 07:47:59] -rw------- 1 boinc boinc    979841 Oct  8 06:41 agis_schedconf.cvmfs.json
[2025-10-08 07:47:59] -rw------- 1 boinc boinc   1560401 Oct  8 06:41 agis_ddmendpoints.agis.ALL.json
[2025-10-08 07:47:59] drwx------ 4 boinc boinc      4096 Oct  8 06:41 pilot3
[2025-10-08 07:47:59] -rw------- 1 boinc boinc 185154406 Oct  8 07:46 HITS.46376905._067783.pool.root.1
[2025-10-08 07:47:59] -rw-r--r-- 1 boinc boinc       529 Oct  8 07:47 boinc_task_state.xml
[2025-10-08 07:47:59] -rw------- 1 boinc boinc      1017 Oct  8 07:47 memory_monitor_summary.json
[2025-10-08 07:47:59] -rw------- 1 boinc boinc    242945 Oct  8 07:47 log.46376905._067783.job.log.tgz.1
[2025-10-08 07:47:59] -rw------- 1 boinc boinc      7770 Oct  8 07:47 heartbeat.json
[2025-10-08 07:47:59] -rw-r--r-- 1 boinc boinc      8192 Oct  8 07:47 boinc_mmap_file
[2025-10-08 07:47:59] -rw-r--r-- 1 boinc boinc        27 Oct  8 07:47 wrapper_checkpoint.txt
[2025-10-08 07:47:59] -rw------- 1 boinc boinc       817 Oct  8 07:47 pilotlog.txt
[2025-10-08 07:47:59] -rw------- 1 boinc boinc        95 Oct  8 07:47 pilot_heartbeat.json
[2025-10-08 07:47:59] -rw------- 1 boinc boinc    589256 Oct  8 07:47 log.46376905._067783.job.log.1
[2025-10-08 07:47:59] -rw------- 1 boinc boinc       357 Oct  8 07:47 output.list
[2025-10-08 07:47:59] -rw-r--r-- 1 boinc boinc       620 Oct  8 07:47 runtime_log
[2025-10-08 07:47:59] -rw------- 1 boinc boinc    849920 Oct  8 07:47 result.tar.gz
[2025-10-08 07:47:59] -rw-r--r-- 1 boinc boinc      8777 Oct  8 07:47 runtime_log.err
[2025-10-08 07:47:59] -rw------- 1 boinc boinc       658 Oct  8 07:47 4IxKDmDUOP8n9Rq4apOajLDm4fhM0noT9bVof3QYDmNQEMDmAvSINm.diag
[2025-10-08 07:47:59] -rw-r--r-- 1 boinc boinc     11396 Oct  8 07:47 stderr.txt
[2025-10-08 07:47:59] HITS file was successfully produced:
[2025-10-08 07:47:59] -rw------- 1 boinc boinc 185154406 Oct  8 07:46 shared/HITS.pool.root.1
[2025-10-08 07:47:59]  *** Contents of shared directory: ***
[2025-10-08 07:47:59] total 392644
[2025-10-08 07:47:59] -rw-r--r-- 2 boinc boinc 215463019 Oct  8 06:41 ATLAS.root_0
[2025-10-08 07:47:59] -rw-r--r-- 2 boinc boinc    565601 Oct  8 06:41 input.tar.gz
[2025-10-08 07:47:59] -rw-r--r-- 2 boinc boinc     15120 Oct  8 06:41 start_atlas.sh
[2025-10-08 07:47:59] -rw------- 1 boinc boinc 185154406 Oct  8 07:46 HITS.pool.root.1
[2025-10-08 07:47:59] -rw------- 1 boinc boinc    849920 Oct  8 07:47 result.tar.gz
07:48:00 (1124219): run_atlas exited; CPU time 14770.213560
07:48:00 (1124219): called boinc_finish(0)

</stderr_txt>
]]>

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