Stderr output

<core_client_version>8.3.0</core_client_version>
<![CDATA[
<stderr_txt>
04:29:57 (4054921): wrapper (7.7.26015): starting
04:29:57 (4054921): wrapper: running run_atlas (--nthreads 4)
[2025-10-08 04:29:57] Arguments: --nthreads 4
[2025-10-08 04:29:57] Threads: 4
[2025-10-08 04:29:57] Checking for CVMFS
[2025-10-08 04:29:59] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-08 04:30:01] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-08 04:30:01] Running cvmfs_config stat atlas.cern.ch
[2025-10-08 04:30:01] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-08 04:30:01] 2.13.2.0 4055974 0 26272 151458 3 1 4036795 6144001 0 130560 0 0 0.000 1291 1166 http://s1bnl-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
[2025-10-08 04:30:01] CVMFS is ok
[2025-10-08 04:30:01] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-08 04:30:01] Small home clusters do not require a local http proxy but it is suggested if
[2025-10-08 04:30:01] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2025-10-08 04:30:01] Further information can be found at the LHC@home message board.
[2025-10-08 04:30:01] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-08 04:30:01] Checking for apptainer binary...
[2025-10-08 04:30:01] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-08 04:30:01] Running /usr/bin/apptainer --version
[2025-10-08 04:30:01] apptainer version 1.4.2
[2025-10-08 04:30:01] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-08 04:30:01] a100-garage
[2025-10-08 04:30:01] apptainer works
[2025-10-08 04:30:01] Set ATHENA_PROC_NUMBER=4
[2025-10-08 04:30:01] Set ATHENA_CORE_NUMBER=4
[2025-10-08 04:30:01] Starting ATLAS job with PandaID=6832973783
[2025-10-08 04:30:01] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/ian/BOINC/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-08 05:36:24]  *** The last 200 lines of the pilot log: ***
[2025-10-08 05:36:24]  mtime=0
[2025-10-08 05:36:24]  protocol_id=None
[2025-10-08 05:36:24]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-10-08 05:36:24]  replicas=None
[2025-10-08 05:36:24]  scope=mc23_13p6TeV
[2025-10-08 05:36:24]  status=None
[2025-10-08 05:36:24]  status_code=0
[2025-10-08 05:36:24]  storage_token=
[2025-10-08 05:36:24]  surl=/home/ian/BOINC/slots/3/PanDA_Pilot-6832973783/log.46376905._119718.job.log.tgz.1
[2025-10-08 05:36:24]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/96/c1/log.46376905._119718.job.log.tgz.1
[2025-10-08 05:36:24]  workdir=None
[2025-10-08 05:36:24] ]
[2025-10-08 05:36:24] 2025-10-08 05:35:31,017 | INFO     | transferring file log.46376905._119718.job.log.tgz.1 from /home/ian/BOINC/slots/3/PanDA_Pilot-6832973783/log.46376905._119718.job.log.tgz.1 to /home/ian/BOINC/slot
[2025-10-08 05:36:24] 2025-10-08 05:35:31,017 | INFO     | executing command: /usr/bin/env mv /home/ian/BOINC/slots/3/PanDA_Pilot-6832973783/log.46376905._119718.job.log.tgz.1 /home/ian/BOINC/slots/3/log.46376905._119718.j
[2025-10-08 05:36:24] 2025-10-08 05:35:31,031 | INFO     | adding to output.list: log.46376905._119718.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/96/c1/log.46376905._119718.job.log.tg
[2025-10-08 05:36:24] 2025-10-08 05:35:31,031 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-08 05:36:24] 2025-10-08 05:35:31,031 | INFO     | summary of transferred files:
[2025-10-08 05:36:24] 2025-10-08 05:35:31,031 | INFO     |  -- lfn=log.46376905._119718.job.log.tgz.1, status_code=0, status=transferred
[2025-10-08 05:36:24] 2025-10-08 05:35:31,031 | INFO     | stage-out finished correctly
[2025-10-08 05:36:24] 2025-10-08 05:35:31,772 | INFO     | monitor loop #300: job 0:6832973783 is in state 'finished'
[2025-10-08 05:36:24] 2025-10-08 05:35:31,772 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-08 05:36:24] 2025-10-08 05:35:32,511 | INFO     | time since job start (3919s) is within the limit (172800.0s)
[2025-10-08 05:36:24] 2025-10-08 05:35:32,741 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-08 05:36:24] 2025-10-08 05:35:32,773 | INFO     | job 6832973783 has state=finished
[2025-10-08 05:36:24] 2025-10-08 05:35:32,773 | INFO     | preparing for final server update for job 6832973783 in state='finished'
[2025-10-08 05:36:24] 2025-10-08 05:35:32,774 | INFO     | this job has now completed (state=finished)
[2025-10-08 05:36:24] 2025-10-08 05:35:32,774 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-08 05:36:24] 2025-10-08 05:35:32,774 | INFO     | log transfer has been attempted: DONE
[2025-10-08 05:36:24] 2025-10-08 05:35:32,774 | INFO     | job 6832973783 has finished - writing final server update
[2025-10-08 05:36:24] 2025-10-08 05:35:32,774 | INFO     | total number of processed events: 400 (read)
[2025-10-08 05:36:24] 2025-10-08 05:35:32,776 | INFO     | executing command: lscpu
[2025-10-08 05:36:24] 2025-10-08 05:35:32,801 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-08 05:36:24] 2025-10-08 05:35:34,276 | INFO     | monitor loop #301: job 0:6832973783 is in state 'finished'
[2025-10-08 05:36:24] 2025-10-08 05:35:34,276 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-08 05:36:24] 2025-10-08 05:35:34,516 | INFO     | time since job start (3921s) is within the limit (172800.0s)
[2025-10-08 05:36:24] 2025-10-08 05:35:34,978 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-08 05:36:24] 2025-10-08 05:35:34,981 | INFO     | found 24 cores (24 cores per socket, 1 socket) HT, CPU MHz: 3489.1299583333325
[2025-10-08 05:36:24] 2025-10-08 05:35:34,985 | INFO     | using path: /home/ian/BOINC/slots/3/PanDA_Pilot-6832973783/memory_monitor_summary.json (trf name=prmon)
[2025-10-08 05:36:24] 2025-10-08 05:35:34,985 | INFO     | extracted standard info from prmon json
[2025-10-08 05:36:24] 2025-10-08 05:35:34,985 | INFO     | extracted standard memory fields from prmon json
[2025-10-08 05:36:24] 2025-10-08 05:35:34,985 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-08 05:36:24] 2025-10-08 05:35:34,985 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-08 05:36:24] 2025-10-08 05:35:34,985 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-08 05:36:24] 2025-10-08 05:35:34,986 | INFO     | fitting pss+swap vs Time
[2025-10-08 05:36:24] 2025-10-08 05:35:34,986 | INFO     | sum of square deviations: 57407588.0
[2025-10-08 05:36:24] 2025-10-08 05:35:34,986 | INFO     | sum of deviations: -2843940536.0
[2025-10-08 05:36:24] 2025-10-08 05:35:34,986 | INFO     | mean x: 1759899847.0
[2025-10-08 05:36:24] 2025-10-08 05:35:34,986 | INFO     | mean y: 2496704.98245614
[2025-10-08 05:36:24] 2025-10-08 05:35:34,986 | INFO     | -- intersect: 87186973331.72208
[2025-10-08 05:36:24] 2025-10-08 05:35:34,986 | INFO     | intersect: 87186973331.72208
[2025-10-08 05:36:24] 2025-10-08 05:35:34,986 | INFO     | chi2: 0.03860483956390687
[2025-10-08 05:36:24] 2025-10-08 05:35:34,986 | INFO     | -- intersect: 87186973331.72208
[2025-10-08 05:36:24] 2025-10-08 05:35:34,986 | INFO     | current memory leak: -49.54 B/s (using 57 data points, chi2=0.04)
[2025-10-08 05:36:24] 2025-10-08 05:35:34,987 | INFO     | could have reported an average CPU frequency of 3565 MHz (6 samples)
[2025-10-08 05:36:24] 2025-10-08 05:35:34,987 | INFO     | ..............................
[2025-10-08 05:36:24] 2025-10-08 05:35:34,987 | INFO     | . Timing measurements:
[2025-10-08 05:36:24] 2025-10-08 05:35:34,987 | INFO     | . get job = 0 s
[2025-10-08 05:36:24] 2025-10-08 05:35:34,987 | INFO     | . initial setup = 2 s
[2025-10-08 05:36:24] 2025-10-08 05:35:34,987 | INFO     | . payload setup = 4 s
[2025-10-08 05:36:24] 2025-10-08 05:35:34,987 | INFO     | . stage-in = 0 s
[2025-10-08 05:36:24] 2025-10-08 05:35:34,987 | INFO     | . payload execution = 3896 s
[2025-10-08 05:36:24] 2025-10-08 05:35:34,987 | INFO     | . stage-out = 0 s
[2025-10-08 05:36:24] 2025-10-08 05:35:34,987 | INFO     | . log creation = 0 s
[2025-10-08 05:36:24] 2025-10-08 05:35:34,987 | INFO     | ..............................
[2025-10-08 05:36:24] 2025-10-08 05:35:35,021 | INFO     | 
[2025-10-08 05:36:24] 2025-10-08 05:35:35,021 | INFO     | job summary report
[2025-10-08 05:36:24] 2025-10-08 05:35:35,021 | INFO     | --------------------------------------------------
[2025-10-08 05:36:24] 2025-10-08 05:35:35,021 | INFO     | PanDA job id: 6832973783
[2025-10-08 05:36:24] 2025-10-08 05:35:35,021 | INFO     | task id: 46376905
[2025-10-08 05:36:24] 2025-10-08 05:35:35,021 | INFO     | errors: (none)
[2025-10-08 05:36:24] 2025-10-08 05:35:35,021 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-08 05:36:24] 2025-10-08 05:35:35,021 | INFO     | pilot state: finished 
[2025-10-08 05:36:24] 2025-10-08 05:35:35,021 | INFO     | transexitcode: 0
[2025-10-08 05:36:24] 2025-10-08 05:35:35,021 | INFO     | exeerrorcode: 0
[2025-10-08 05:36:24] 2025-10-08 05:35:35,021 | INFO     | exeerrordiag: 
[2025-10-08 05:36:24] 2025-10-08 05:35:35,021 | INFO     | exitcode: 0
[2025-10-08 05:36:24] 2025-10-08 05:35:35,021 | INFO     | exitmsg: OK
[2025-10-08 05:36:24] 2025-10-08 05:35:35,021 | INFO     | cpuconsumptiontime: 15065 s
[2025-10-08 05:36:24] 2025-10-08 05:35:35,021 | INFO     | nevents: 400
[2025-10-08 05:36:24] 2025-10-08 05:35:35,021 | INFO     | neventsw: 0
[2025-10-08 05:36:24] 2025-10-08 05:35:35,022 | INFO     | pid: 4090894
[2025-10-08 05:36:24] 2025-10-08 05:35:35,022 | INFO     | pgrp: 4090894
[2025-10-08 05:36:24] 2025-10-08 05:35:35,022 | INFO     | corecount: 4
[2025-10-08 05:36:24] 2025-10-08 05:35:35,022 | INFO     | event service: False
[2025-10-08 05:36:24] 2025-10-08 05:35:35,022 | INFO     | sizes: {0: 2348821, 2: 2349083, 11: 2349111, 3904: 2374993, 3905: 2383993, 3906: 2384049, 3909: 2384371}
[2025-10-08 05:36:24] 2025-10-08 05:35:35,022 | INFO     | --------------------------------------------------
[2025-10-08 05:36:24] 2025-10-08 05:35:35,022 | INFO     | 
[2025-10-08 05:36:24] 2025-10-08 05:35:35,022 | INFO     | executing command: ls -lF /home/ian/BOINC/slots/3
[2025-10-08 05:36:24] 2025-10-08 05:35:35,038 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-08 05:36:24] 2025-10-08 05:35:35,038 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-08 05:36:24] 2025-10-08 05:35:35,038 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-08 05:36:24] 2025-10-08 05:35:35,038 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-08 05:36:24] 2025-10-08 05:35:35,038 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-08 05:36:24] 2025-10-08 05:35:35,038 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-08 05:36:24] 2025-10-08 05:35:35,038 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-08 05:36:24] 2025-10-08 05:35:35,038 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-08 05:36:24] 2025-10-08 05:35:35,038 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-08 05:36:24] 2025-10-08 05:35:35,038 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-08 05:36:24] 2025-10-08 05:35:35,038 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-08 05:36:24] 2025-10-08 05:35:35,038 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-08 05:36:24] 2025-10-08 05:35:35,038 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-08 05:36:24] 2025-10-08 05:35:35,038 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-08 05:36:24] 2025-10-08 05:35:35,038 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-08 05:36:24] 2025-10-08 05:35:35,038 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-08 05:36:24] 2025-10-08 05:35:35,038 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-08 05:36:24] 2025-10-08 05:35:35,039 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-08 05:36:24] 2025-10-08 05:35:35,039 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-08 05:36:24] 2025-10-08 05:35:35,039 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-08 05:36:24] 2025-10-08 05:35:35,039 | INFO     | job 6832973783 has completed (purged errors)
[2025-10-08 05:36:24] 2025-10-08 05:35:35,039 | INFO     | overall cleanup function is called
[2025-10-08 05:36:24] 2025-10-08 05:35:36,045 | INFO     | --- collectZombieJob: --- 10, [4090894]
[2025-10-08 05:36:24] 2025-10-08 05:35:36,046 | INFO     | zombie collector waiting for pid 4090894
[2025-10-08 05:36:24] 2025-10-08 05:35:36,046 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-08 05:36:24] 2025-10-08 05:35:36,046 | INFO     | collected zombie processes
[2025-10-08 05:36:24] 2025-10-08 05:35:36,046 | INFO     | will attempt to kill all subprocesses of pid=4090894
[2025-10-08 05:36:24] 2025-10-08 05:35:36,136 | INFO     | process IDs to be killed: [4090894] (in reverse order)
[2025-10-08 05:36:24] 2025-10-08 05:35:36,173 | WARNING  | found no corresponding commands to process id(s)
[2025-10-08 05:36:24] 2025-10-08 05:35:36,174 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-08 05:36:24] 2025-10-08 05:35:36,176 | INFO     | did not find any defunct processes belonging to 4090894
[2025-10-08 05:36:24] 2025-10-08 05:35:36,179 | INFO     | did not find any defunct processes belonging to 4090894
[2025-10-08 05:36:24] 2025-10-08 05:35:36,179 | INFO     | ready for new job
[2025-10-08 05:36:24] 2025-10-08 05:35:36,179 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-08 05:36:24] 2025-10-08 05:35:36,180 | INFO     | ***************************************
[2025-10-08 05:36:24] 2025-10-08 05:35:36,180 | INFO     | ***  PanDA Pilot version 3.10.5.57  ***
[2025-10-08 05:36:24] 2025-10-08 05:35:36,180 | INFO     | ***************************************
[2025-10-08 05:36:24] 2025-10-08 05:35:36,180 | INFO     | 
[2025-10-08 05:36:24] 2025-10-08 05:35:36,181 | INFO     | architecture information:
[2025-10-08 05:36:24] 2025-10-08 05:35:36,181 | INFO     | executing command: cat /etc/os-release
[2025-10-08 05:36:24] 2025-10-08 05:35:36,192 | INFO     | cat /etc/os-release:
[2025-10-08 05:36:24] NAME="CentOS Linux"
[2025-10-08 05:36:24] VERSION="7 (Core)"
[2025-10-08 05:36:24] ID="centos"
[2025-10-08 05:36:24] ID_LIKE="rhel fedora"
[2025-10-08 05:36:24] VERSION_ID="7"
[2025-10-08 05:36:24] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-08 05:36:24] ANSI_COLOR="0;31"
[2025-10-08 05:36:24] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-08 05:36:24] HOME_URL="https://www.centos.org/"
[2025-10-08 05:36:24] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-08 05:36:24] 
[2025-10-08 05:36:24] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-08 05:36:24] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-08 05:36:24] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-08 05:36:24] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-08 05:36:24] 
[2025-10-08 05:36:24] 2025-10-08 05:35:36,192 | INFO     | ***************************************
[2025-10-08 05:36:24] 2025-10-08 05:35:36,695 | INFO     | executing command: df -mP /home/ian/BOINC/slots/3
[2025-10-08 05:36:24] 2025-10-08 05:35:36,705 | INFO     | sufficient remaining disk space (34407972864 B)
[2025-10-08 05:36:24] 2025-10-08 05:35:36,705 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-08 05:36:24] 2025-10-08 05:35:36,705 | INFO     | current server update state: UPDATING_FINAL
[2025-10-08 05:36:24] 2025-10-08 05:35:36,706 | INFO     | update_server=False
[2025-10-08 05:36:24] 2025-10-08 05:35:36,706 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-08 05:36:24] 2025-10-08 05:35:36,706 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-08 05:36:24] 2025-10-08 05:35:36,706 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-08 05:36:24] 2025-10-08 05:35:36,779 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-10-08 05:36:24] 2025-10-08 05:35:36,779 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-10-08 05:36:24] 2025-10-08 05:35:36,779 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-08 05:36:24] 2025-10-08 05:35:36,780 | INFO     | will abort loop
[2025-10-08 05:36:24] 2025-10-08 05:35:37,072 | INFO     | all data control threads have been joined
[2025-10-08 05:36:24] 2025-10-08 05:35:37,492 | INFO     | all payload control threads have been joined
[2025-10-08 05:36:24] 2025-10-08 05:35:37,711 | INFO     | [job] retrieve thread has finished
[2025-10-08 05:36:24] 2025-10-08 05:35:37,711 | INFO     | [job] queue monitor thread has finished
[2025-10-08 05:36:24] 2025-10-08 05:35:37,785 | INFO     | [job] job monitor thread has finished
[2025-10-08 05:36:24] 2025-10-08 05:35:37,847 | INFO     | all job control threads have been joined
[2025-10-08 05:36:24] 2025-10-08 05:35:37,919 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-08 05:36:24] 2025-10-08 05:35:37,991 | INFO     | [payload] failed_post thread has finished
[2025-10-08 05:36:24] 2025-10-08 05:35:38,077 | INFO     | [data] control thread has finished
[2025-10-08 05:36:24] 2025-10-08 05:35:38,388 | INFO     | [job] validate thread has finished
[2025-10-08 05:36:24] 2025-10-08 05:35:38,477 | INFO     | [data] copytool_in thread has finished
[2025-10-08 05:36:24] 2025-10-08 05:35:38,497 | INFO     | [payload] control thread has finished
[2025-10-08 05:36:24] 2025-10-08 05:35:38,711 | INFO     | [data] copytool_out thread has finished
[2025-10-08 05:36:24] 2025-10-08 05:35:38,747 | INFO     | [payload] execute_payloads thread has finished
[2025-10-08 05:36:24] 2025-10-08 05:35:38,779 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-08 05:36:24] 2025-10-08 05:35:38,793 | INFO     | [job] create_data_payload thread has finished
[2025-10-08 05:36:24] 2025-10-08 05:35:38,852 | INFO     | [job] control thread has finished
[2025-10-08 05:36:24] 2025-10-08 05:35:38,938 | INFO     | [payload] validate_pre thread has finished
[2025-10-08 05:36:24] 2025-10-08 05:35:39,281 | INFO     | [payload] validate_post thread has finished
[2025-10-08 05:36:24] 2025-10-08 05:35:42,784 | INFO     | [data] queue_monitor thread has finished
[2025-10-08 05:36:24] 2025-10-08 05:36:07,687 | INFO     | PID=4068731 has CPU usage=2.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-08 05:36:24] 2025-10-08 05:36:07,688 | INFO     | found 0 job(s) in 20 queues
[2025-10-08 05:36:24] 2025-10-08 05:36:07,688 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-08 05:36:24] 2025-10-08 05:36:07,688 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-08 05:36:24] 2025-10-08 05:36:18,201 | INFO     | [monitor] cgroup control has ended
[2025-10-08 05:36:24] 2025-10-08 05:36:19,622 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 133631634487104)>', '<ExcThread(monitor, started 133630919698176)>']
[2025-10-08 05:36:24] 2025-10-08 05:36:19,748 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-08 05:36:24] 2025-10-08 05:36:19,748 | INFO     | [monitor] control thread has ended
[2025-10-08 05:36:24] 2025-10-08 05:36:24,647 | INFO     | all workflow threads have been joined
[2025-10-08 05:36:24] 2025-10-08 05:36:24,647 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-08 05:36:24] 2025-10-08 05:36:24,647 | INFO     | traces error code: 0
[2025-10-08 05:36:24] 2025-10-08 05:36:24,647 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-08 05:36:24] 2025-10-08 05:36:24,697 [wrapper] ==== pilot stdout END ====
[2025-10-08 05:36:24] 2025-10-08 05:36:24,699 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-08 05:36:24] 2025-10-08 05:36:24,701 [wrapper] pilotpid: 4068731
[2025-10-08 05:36:24] 2025-10-08 05:36:24,703 [wrapper] Pilot exit status: 0
[2025-10-08 05:36:24] 2025-10-08 05:36:24,710 [wrapper] pandaids: 6832973783
[2025-10-08 05:36:24] 2025-10-08 05:36:24,735 [wrapper] cleanup supervisor_pilot 1110394 4068735
[2025-10-08 05:36:24] 2025-10-08 05:36:24,737 [wrapper] Test setup, not cleaning
[2025-10-08 05:36:24] 2025-10-08 05:36:24,739 [wrapper] apfmon messages muted
[2025-10-08 05:36:24] 2025-10-08 05:36:24,741 [wrapper] ==== wrapper stdout END ====
[2025-10-08 05:36:24] 2025-10-08 05:36:24,743 [wrapper] ==== wrapper stderr END ====
[2025-10-08 05:36:24]  *** Error codes and diagnostics ***
[2025-10-08 05:36:24]     "exeErrorCode": 0,
[2025-10-08 05:36:24]     "exeErrorDiag": "",
[2025-10-08 05:36:24]     "pilotErrorCode": 0,
[2025-10-08 05:36:24]     "pilotErrorDiag": "",
[2025-10-08 05:36:24]  *** Listing of results directory ***
[2025-10-08 05:36:24] total 392452
[2025-10-08 05:36:24] -rw-r--r-- 1 ian ian    552446 Oct  6 21:13 pilot3.tar.gz
[2025-10-08 05:36:24] -rwx------ 1 ian ian     36292 Oct  6 21:17 runpilot2-wrapper.sh
[2025-10-08 05:36:24] -rw-r--r-- 1 ian ian      5112 Oct  6 21:17 queuedata.json
[2025-10-08 05:36:24] -rw-rw-r-- 1 ian ian       100 Oct  8 04:29 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-08 05:36:24] -rwxr-xr-x 1 ian ian      7986 Oct  8 04:29 run_atlas
[2025-10-08 05:36:24] -rw-rw-r-- 1 ian ian       105 Oct  8 04:29 job.xml
[2025-10-08 05:36:24] -rw-r--r-- 2 ian ian 214089620 Oct  8 04:29 EVNT.46376901._004443.pool.root.1
[2025-10-08 05:36:24] -rw-r--r-- 2 ian ian    565601 Oct  8 04:29 input.tar.gz
[2025-10-08 05:36:24] -rw-r--r-- 2 ian ian     15120 Oct  8 04:29 start_atlas.sh
[2025-10-08 05:36:24] drwxrwx--x 2 ian ian      4096 Oct  8 04:29 shared
[2025-10-08 05:36:24] -rw-rw-r-- 1 ian ian         0 Oct  8 04:29 boinc_setup_complete
[2025-10-08 05:36:24] -rw-rw-r-- 1 ian ian      9256 Oct  8 04:29 init_data.xml
[2025-10-08 05:36:24] -rw-rw-r-- 1 ian ian         0 Oct  8 04:29 boinc_lockfile
[2025-10-08 05:36:24] -rw-rw-r-- 1 ian ian      2521 Oct  8 04:30 pandaJob.out
[2025-10-08 05:36:24] -rw------- 1 ian ian    979841 Oct  8 04:30 agis_schedconf.cvmfs.json
[2025-10-08 05:36:24] -rw------- 1 ian ian   1560401 Oct  8 04:30 agis_ddmendpoints.agis.ALL.json
[2025-10-08 05:36:24] drwx------ 4 ian ian      4096 Oct  8 04:30 pilot3
[2025-10-08 05:36:24] -rw-rw-r-- 1 ian ian       529 Oct  8 05:35 boinc_task_state.xml
[2025-10-08 05:36:24] -rw------- 1 ian ian 182183795 Oct  8 05:35 HITS.46376905._119718.pool.root.1
[2025-10-08 05:36:24] -rw------- 1 ian ian      1012 Oct  8 05:35 memory_monitor_summary.json
[2025-10-08 05:36:24] -rw------- 1 ian ian    251874 Oct  8 05:35 log.46376905._119718.job.log.tgz.1
[2025-10-08 05:36:24] -rw------- 1 ian ian      7723 Oct  8 05:35 heartbeat.json
[2025-10-08 05:36:24] -rw------- 1 ian ian        95 Oct  8 05:36 pilot_heartbeat.json
[2025-10-08 05:36:24] -rw-rw-r-- 1 ian ian      8192 Oct  8 05:36 boinc_mmap_file
[2025-10-08 05:36:24] -rw-rw-r-- 1 ian ian        27 Oct  8 05:36 wrapper_checkpoint.txt
[2025-10-08 05:36:24] -rw------- 1 ian ian      4935 Oct  8 05:36 pilotlog.txt
[2025-10-08 05:36:24] -rw------- 1 ian ian    596194 Oct  8 05:36 log.46376905._119718.job.log.1
[2025-10-08 05:36:24] -rw------- 1 ian ian       357 Oct  8 05:36 output.list
[2025-10-08 05:36:24] -rw-rw-r-- 1 ian ian       620 Oct  8 05:36 runtime_log
[2025-10-08 05:36:24] -rw------- 1 ian ian    870400 Oct  8 05:36 result.tar.gz
[2025-10-08 05:36:24] -rw------- 1 ian ian       652 Oct  8 05:36 U2FNDmzk7P8n9Rq4apOajLDm4fhM0noT9bVof3QYDmk5JMDmRxNcSo.diag
[2025-10-08 05:36:24] -rw-rw-r-- 1 ian ian      8721 Oct  8 05:36 runtime_log.err
[2025-10-08 05:36:24] -rw-rw-r-- 1 ian ian     21736 Oct  8 05:36 stderr.txt
[2025-10-08 05:36:24] HITS file was successfully produced:
[2025-10-08 05:36:24] -rw------- 1 ian ian 182183795 Oct  8 05:35 shared/HITS.pool.root.1
[2025-10-08 05:36:24]  *** Contents of shared directory: ***
[2025-10-08 05:36:24] total 388420
[2025-10-08 05:36:24] -rw-r--r-- 2 ian ian 214089620 Oct  8 04:29 ATLAS.root_0
[2025-10-08 05:36:24] -rw-r--r-- 2 ian ian    565601 Oct  8 04:29 input.tar.gz
[2025-10-08 05:36:24] -rw-r--r-- 2 ian ian     15120 Oct  8 04:29 start_atlas.sh
[2025-10-08 05:36:24] -rw------- 1 ian ian 182183795 Oct  8 05:35 HITS.pool.root.1
[2025-10-08 05:36:24] -rw------- 1 ian ian    870400 Oct  8 05:36 result.tar.gz
05:36:26 (4054921): run_atlas exited; CPU time 15084.607097
05:36:26 (4054921): called boinc_finish(0)

</stderr_txt>
]]>

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