Stderr output

<core_client_version>8.3.0</core_client_version>
<![CDATA[
<stderr_txt>
04:29:58 (4055599): wrapper (7.7.26015): starting
04:29:58 (4055599): wrapper: running run_atlas (--nthreads 4)
[2025-10-08 04:29:58] Arguments: --nthreads 4
[2025-10-08 04:29:58] Threads: 4
[2025-10-08 04:29:58] Checking for CVMFS
[2025-10-08 04:29:59] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-08 04:30:01] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-08 04:30:01] Running cvmfs_config stat atlas.cern.ch
[2025-10-08 04:30:01] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-08 04:30:01] 2.13.2.0 4055974 0 26272 151458 3 1 4036795 6144001 0 130560 0 0 0.000 1291 1166 http://s1bnl-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
[2025-10-08 04:30:01] CVMFS is ok
[2025-10-08 04:30:01] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-08 04:30:01] Small home clusters do not require a local http proxy but it is suggested if
[2025-10-08 04:30:01] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2025-10-08 04:30:01] Further information can be found at the LHC@home message board.
[2025-10-08 04:30:01] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-08 04:30:01] Checking for apptainer binary...
[2025-10-08 04:30:01] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-08 04:30:01] Running /usr/bin/apptainer --version
[2025-10-08 04:30:01] apptainer version 1.4.2
[2025-10-08 04:30:01] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-08 04:30:01] a100-garage
[2025-10-08 04:30:01] apptainer works
[2025-10-08 04:30:01] Set ATHENA_PROC_NUMBER=4
[2025-10-08 04:30:01] Set ATHENA_CORE_NUMBER=4
[2025-10-08 04:30:01] Starting ATLAS job with PandaID=6830520627
[2025-10-08 04:30:01] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/ian/BOINC/slots/4 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-08 05:35:25]  *** The last 200 lines of the pilot log: ***
[2025-10-08 05:35:25]  status_code=0
[2025-10-08 05:35:25]  storage_token=
[2025-10-08 05:35:25]  surl=/home/ian/BOINC/slots/4/PanDA_Pilot-6830520627/log.46376905._069855.job.log.tgz.1
[2025-10-08 05:35:25]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/94/bf/log.46376905._069855.job.log.tgz.1
[2025-10-08 05:35:25]  workdir=None
[2025-10-08 05:35:25] ]
[2025-10-08 05:35:25] 2025-10-08 05:34:36,190 | INFO     | transferring file log.46376905._069855.job.log.tgz.1 from /home/ian/BOINC/slots/4/PanDA_Pilot-6830520627/log.46376905._069855.job.log.tgz.1 to /home/ian/BOINC/slot
[2025-10-08 05:35:25] 2025-10-08 05:34:36,190 | INFO     | executing command: /usr/bin/env mv /home/ian/BOINC/slots/4/PanDA_Pilot-6830520627/log.46376905._069855.job.log.tgz.1 /home/ian/BOINC/slots/4/log.46376905._069855.j
[2025-10-08 05:35:25] 2025-10-08 05:34:36,204 | INFO     | adding to output.list: log.46376905._069855.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/94/bf/log.46376905._069855.job.log.tg
[2025-10-08 05:35:25] 2025-10-08 05:34:36,204 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-08 05:35:25] 2025-10-08 05:34:36,204 | INFO     | summary of transferred files:
[2025-10-08 05:35:25] 2025-10-08 05:34:36,204 | INFO     |  -- lfn=log.46376905._069855.job.log.tgz.1, status_code=0, status=transferred
[2025-10-08 05:35:25] 2025-10-08 05:34:36,205 | INFO     | stage-out finished correctly
[2025-10-08 05:35:25] 2025-10-08 05:34:36,418 | WARNING  | process 4090896 can no longer be monitored (due to stat problems) - aborting
[2025-10-08 05:35:25] 2025-10-08 05:34:36,418 | INFO     | using path: /home/ian/BOINC/slots/4/PanDA_Pilot-6830520627/memory_monitor_summary.json (trf name=prmon)
[2025-10-08 05:35:25] 2025-10-08 05:34:36,504 | INFO     | number of running child processes to parent process 4090896: 1
[2025-10-08 05:35:25] 2025-10-08 05:34:36,504 | INFO     | maximum number of monitored processes: 6
[2025-10-08 05:35:25] 2025-10-08 05:34:38,163 | INFO     | time since job start (3865s) is within the limit (172800.0s)
[2025-10-08 05:35:25] 2025-10-08 05:34:38,684 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-08 05:35:25] 2025-10-08 05:34:39,006 | INFO     | monitor loop #296: job 0:6830520627 is in state 'finished'
[2025-10-08 05:35:25] 2025-10-08 05:34:39,006 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-08 05:35:25] 2025-10-08 05:34:40,169 | INFO     | time since job start (3867s) is within the limit (172800.0s)
[2025-10-08 05:35:25] 2025-10-08 05:34:40,505 | INFO     | job 6830520627 has state=finished
[2025-10-08 05:35:25] 2025-10-08 05:34:40,505 | INFO     | preparing for final server update for job 6830520627 in state='finished'
[2025-10-08 05:35:25] 2025-10-08 05:34:40,505 | INFO     | this job has now completed (state=finished)
[2025-10-08 05:35:25] 2025-10-08 05:34:40,506 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-08 05:35:25] 2025-10-08 05:34:40,506 | INFO     | log transfer has been attempted: DONE
[2025-10-08 05:35:25] 2025-10-08 05:34:40,506 | INFO     | job 6830520627 has finished - writing final server update
[2025-10-08 05:35:25] 2025-10-08 05:34:40,506 | INFO     | total number of processed events: 400 (read)
[2025-10-08 05:35:25] 2025-10-08 05:34:40,507 | INFO     | executing command: lscpu
[2025-10-08 05:35:25] 2025-10-08 05:34:40,533 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-08 05:35:25] 2025-10-08 05:34:41,509 | INFO     | monitor loop #297: job 0:6830520627 is in state 'finished'
[2025-10-08 05:35:25] 2025-10-08 05:34:41,509 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-08 05:35:25] 2025-10-08 05:34:42,175 | INFO     | time since job start (3869s) is within the limit (172800.0s)
[2025-10-08 05:35:25] 2025-10-08 05:34:42,810 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-08 05:35:25] 2025-10-08 05:34:42,814 | INFO     | found 24 cores (24 cores per socket, 1 socket) HT, CPU MHz: 3513.2647708333334
[2025-10-08 05:35:25] 2025-10-08 05:34:42,817 | INFO     | using path: /home/ian/BOINC/slots/4/PanDA_Pilot-6830520627/memory_monitor_summary.json (trf name=prmon)
[2025-10-08 05:35:25] 2025-10-08 05:34:42,818 | INFO     | extracted standard info from prmon json
[2025-10-08 05:35:25] 2025-10-08 05:34:42,818 | INFO     | extracted standard memory fields from prmon json
[2025-10-08 05:35:25] 2025-10-08 05:34:42,818 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-08 05:35:25] 2025-10-08 05:34:42,818 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-08 05:35:25] 2025-10-08 05:34:42,818 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-08 05:35:25] 2025-10-08 05:34:42,819 | INFO     | fitting pss+swap vs Time
[2025-10-08 05:35:25] 2025-10-08 05:34:42,819 | INFO     | sum of square deviations: 54438230.0
[2025-10-08 05:35:25] 2025-10-08 05:34:42,819 | INFO     | sum of deviations: -2505811283.5
[2025-10-08 05:35:25] 2025-10-08 05:34:42,819 | INFO     | mean x: 1759899816.5
[2025-10-08 05:35:25] 2025-10-08 05:34:42,819 | INFO     | mean y: 2504190.5535714286
[2025-10-08 05:35:25] 2025-10-08 05:34:42,819 | INFO     | -- intersect: 81011324977.25584
[2025-10-08 05:35:25] 2025-10-08 05:34:42,819 | INFO     | intersect: 81011324977.25584
[2025-10-08 05:35:25] 2025-10-08 05:34:42,819 | INFO     | chi2: 0.03581642114188952
[2025-10-08 05:35:25] 2025-10-08 05:34:42,819 | INFO     | -- intersect: 81011324977.25584
[2025-10-08 05:35:25] 2025-10-08 05:34:42,819 | INFO     | current memory leak: -46.03 B/s (using 56 data points, chi2=0.04)
[2025-10-08 05:35:25] 2025-10-08 05:34:42,819 | INFO     | could have reported an average CPU frequency of 3595 MHz (6 samples)
[2025-10-08 05:35:25] 2025-10-08 05:34:42,819 | INFO     | ..............................
[2025-10-08 05:35:25] 2025-10-08 05:34:42,819 | INFO     | . Timing measurements:
[2025-10-08 05:35:25] 2025-10-08 05:34:42,819 | INFO     | . get job = 0 s
[2025-10-08 05:35:25] 2025-10-08 05:34:42,819 | INFO     | . initial setup = 2 s
[2025-10-08 05:35:25] 2025-10-08 05:34:42,819 | INFO     | . payload setup = 4 s
[2025-10-08 05:35:25] 2025-10-08 05:34:42,819 | INFO     | . stage-in = 0 s
[2025-10-08 05:35:25] 2025-10-08 05:34:42,819 | INFO     | . payload execution = 3842 s
[2025-10-08 05:35:25] 2025-10-08 05:34:42,819 | INFO     | . stage-out = 0 s
[2025-10-08 05:35:25] 2025-10-08 05:34:42,819 | INFO     | . log creation = 0 s
[2025-10-08 05:35:25] 2025-10-08 05:34:42,820 | INFO     | ..............................
[2025-10-08 05:35:25] 2025-10-08 05:34:42,854 | INFO     | 
[2025-10-08 05:35:25] 2025-10-08 05:34:42,854 | INFO     | job summary report
[2025-10-08 05:35:25] 2025-10-08 05:34:42,854 | INFO     | --------------------------------------------------
[2025-10-08 05:35:25] 2025-10-08 05:34:42,854 | INFO     | PanDA job id: 6830520627
[2025-10-08 05:35:25] 2025-10-08 05:34:42,854 | INFO     | task id: 46376905
[2025-10-08 05:35:25] 2025-10-08 05:34:42,854 | INFO     | errors: (none)
[2025-10-08 05:35:25] 2025-10-08 05:34:42,854 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-08 05:35:25] 2025-10-08 05:34:42,854 | INFO     | pilot state: finished 
[2025-10-08 05:35:25] 2025-10-08 05:34:42,854 | INFO     | transexitcode: 0
[2025-10-08 05:35:25] 2025-10-08 05:34:42,854 | INFO     | exeerrorcode: 0
[2025-10-08 05:35:25] 2025-10-08 05:34:42,854 | INFO     | exeerrordiag: 
[2025-10-08 05:35:25] 2025-10-08 05:34:42,854 | INFO     | exitcode: 0
[2025-10-08 05:35:25] 2025-10-08 05:34:42,854 | INFO     | exitmsg: OK
[2025-10-08 05:35:25] 2025-10-08 05:34:42,854 | INFO     | cpuconsumptiontime: 14696 s
[2025-10-08 05:35:25] 2025-10-08 05:34:42,854 | INFO     | nevents: 400
[2025-10-08 05:35:25] 2025-10-08 05:34:42,854 | INFO     | neventsw: 0
[2025-10-08 05:35:25] 2025-10-08 05:34:42,854 | INFO     | pid: 4090896
[2025-10-08 05:35:25] 2025-10-08 05:34:42,854 | INFO     | pgrp: 4090896
[2025-10-08 05:35:25] 2025-10-08 05:34:42,854 | INFO     | corecount: 4
[2025-10-08 05:35:25] 2025-10-08 05:34:42,854 | INFO     | event service: False
[2025-10-08 05:35:25] 2025-10-08 05:34:42,854 | INFO     | sizes: {0: 2348816, 2: 2349078, 11: 2349106, 3849: 2374958, 3850: 2383958, 3852: 2384014, 3856: 2384336}
[2025-10-08 05:35:25] 2025-10-08 05:34:42,854 | INFO     | --------------------------------------------------
[2025-10-08 05:35:25] 2025-10-08 05:34:42,854 | INFO     | 
[2025-10-08 05:35:25] 2025-10-08 05:34:42,854 | INFO     | executing command: ls -lF /home/ian/BOINC/slots/4
[2025-10-08 05:35:25] 2025-10-08 05:34:42,869 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-08 05:35:25] 2025-10-08 05:34:42,869 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-08 05:35:25] 2025-10-08 05:34:42,869 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-08 05:35:25] 2025-10-08 05:34:42,869 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-08 05:35:25] 2025-10-08 05:34:42,869 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-08 05:35:25] 2025-10-08 05:34:42,869 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-08 05:35:25] 2025-10-08 05:34:42,869 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-08 05:35:25] 2025-10-08 05:34:42,869 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-08 05:35:25] 2025-10-08 05:34:42,869 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-08 05:35:25] 2025-10-08 05:34:42,869 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-08 05:35:25] 2025-10-08 05:34:42,869 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-08 05:35:25] 2025-10-08 05:34:42,869 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-08 05:35:25] 2025-10-08 05:34:42,869 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-08 05:35:25] 2025-10-08 05:34:42,869 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-08 05:35:25] 2025-10-08 05:34:42,869 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-08 05:35:25] 2025-10-08 05:34:42,869 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-08 05:35:25] 2025-10-08 05:34:42,869 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-08 05:35:25] 2025-10-08 05:34:42,870 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-08 05:35:25] 2025-10-08 05:34:42,870 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-08 05:35:25] 2025-10-08 05:34:42,870 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-08 05:35:25] 2025-10-08 05:34:42,870 | INFO     | job 6830520627 has completed (purged errors)
[2025-10-08 05:35:25] 2025-10-08 05:34:42,870 | INFO     | overall cleanup function is called
[2025-10-08 05:35:25] 2025-10-08 05:34:43,876 | INFO     | --- collectZombieJob: --- 10, [4090896]
[2025-10-08 05:35:25] 2025-10-08 05:34:43,876 | INFO     | zombie collector waiting for pid 4090896
[2025-10-08 05:35:25] 2025-10-08 05:34:43,876 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-08 05:35:25] 2025-10-08 05:34:43,876 | INFO     | collected zombie processes
[2025-10-08 05:35:25] 2025-10-08 05:34:43,876 | INFO     | will attempt to kill all subprocesses of pid=4090896
[2025-10-08 05:35:25] 2025-10-08 05:34:43,966 | INFO     | process IDs to be killed: [4090896] (in reverse order)
[2025-10-08 05:35:25] 2025-10-08 05:34:44,004 | WARNING  | found no corresponding commands to process id(s)
[2025-10-08 05:35:25] 2025-10-08 05:34:44,004 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-08 05:35:25] 2025-10-08 05:34:44,007 | INFO     | did not find any defunct processes belonging to 4090896
[2025-10-08 05:35:25] 2025-10-08 05:34:44,010 | INFO     | did not find any defunct processes belonging to 4090896
[2025-10-08 05:35:25] 2025-10-08 05:34:44,010 | INFO     | ready for new job
[2025-10-08 05:35:25] 2025-10-08 05:34:44,010 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-08 05:35:25] 2025-10-08 05:34:44,011 | INFO     | ***************************************
[2025-10-08 05:35:25] 2025-10-08 05:34:44,011 | INFO     | ***  PanDA Pilot version 3.10.5.57  ***
[2025-10-08 05:35:25] 2025-10-08 05:34:44,011 | INFO     | ***************************************
[2025-10-08 05:35:25] 2025-10-08 05:34:44,011 | INFO     | 
[2025-10-08 05:35:25] 2025-10-08 05:34:44,012 | INFO     | architecture information:
[2025-10-08 05:35:25] 2025-10-08 05:34:44,012 | INFO     | executing command: cat /etc/os-release
[2025-10-08 05:35:25] 2025-10-08 05:34:44,022 | INFO     | cat /etc/os-release:
[2025-10-08 05:35:25] NAME="CentOS Linux"
[2025-10-08 05:35:25] VERSION="7 (Core)"
[2025-10-08 05:35:25] ID="centos"
[2025-10-08 05:35:25] ID_LIKE="rhel fedora"
[2025-10-08 05:35:25] VERSION_ID="7"
[2025-10-08 05:35:25] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-08 05:35:25] ANSI_COLOR="0;31"
[2025-10-08 05:35:25] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-08 05:35:25] HOME_URL="https://www.centos.org/"
[2025-10-08 05:35:25] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-08 05:35:25] 
[2025-10-08 05:35:25] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-08 05:35:25] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-08 05:35:25] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-08 05:35:25] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-08 05:35:25] 
[2025-10-08 05:35:25] 2025-10-08 05:34:44,023 | INFO     | ***************************************
[2025-10-08 05:35:25] 2025-10-08 05:34:44,525 | INFO     | executing command: df -mP /home/ian/BOINC/slots/4
[2025-10-08 05:35:25] 2025-10-08 05:34:44,537 | INFO     | sufficient remaining disk space (34194063360 B)
[2025-10-08 05:35:25] 2025-10-08 05:34:44,537 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-08 05:35:25] 2025-10-08 05:34:44,537 | INFO     | current server update state: UPDATING_FINAL
[2025-10-08 05:35:25] 2025-10-08 05:34:44,537 | INFO     | update_server=False
[2025-10-08 05:35:25] 2025-10-08 05:34:44,537 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-08 05:35:25] 2025-10-08 05:34:44,537 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-08 05:35:25] 2025-10-08 05:34:44,537 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-08 05:35:25] 2025-10-08 05:34:44,720 | INFO     | all payload control threads have been joined
[2025-10-08 05:35:25] 2025-10-08 05:34:44,722 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-08 05:35:25] 2025-10-08 05:34:44,750 | INFO     | all job control threads have been joined
[2025-10-08 05:35:25] 2025-10-08 05:34:45,017 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-08 05:35:25] 2025-10-08 05:34:45,017 | INFO     | aborting loop
[2025-10-08 05:35:25] 2025-10-08 05:34:45,332 | INFO     | all data control threads have been joined
[2025-10-08 05:35:25] 2025-10-08 05:34:45,542 | INFO     | [job] retrieve thread has finished
[2025-10-08 05:35:25] 2025-10-08 05:34:45,543 | INFO     | [job] queue monitor thread has finished
[2025-10-08 05:35:25] 2025-10-08 05:34:45,725 | INFO     | [payload] control thread has finished
[2025-10-08 05:35:25] 2025-10-08 05:34:45,755 | INFO     | [job] control thread has finished
[2025-10-08 05:35:25] 2025-10-08 05:34:45,870 | INFO     | [payload] execute_payloads thread has finished
[2025-10-08 05:35:25] 2025-10-08 05:34:46,022 | INFO     | [job] job monitor thread has finished
[2025-10-08 05:35:25] 2025-10-08 05:34:46,177 | INFO     | [payload] validate_pre thread has finished
[2025-10-08 05:35:25] 2025-10-08 05:34:46,202 | INFO     | [job] validate thread has finished
[2025-10-08 05:35:25] 2025-10-08 05:34:46,337 | INFO     | [data] control thread has finished
[2025-10-08 05:35:25] 2025-10-08 05:34:46,379 | INFO     | [job] create_data_payload thread has finished
[2025-10-08 05:35:25] 2025-10-08 05:34:46,504 | INFO     | [payload] validate_post thread has finished
[2025-10-08 05:35:25] 2025-10-08 05:34:46,527 | INFO     | [payload] failed_post thread has finished
[2025-10-08 05:35:25] 2025-10-08 05:34:46,543 | INFO     | [data] copytool_out thread has finished
[2025-10-08 05:35:25] 2025-10-08 05:34:47,043 | INFO     | [data] copytool_in thread has finished
[2025-10-08 05:35:25] 2025-10-08 05:34:48,728 | INFO     | [data] queue_monitor thread has finished
[2025-10-08 05:35:25] 2025-10-08 05:34:54,796 | INFO     | job.realtimelogging is not enabled
[2025-10-08 05:35:25] 2025-10-08 05:34:55,801 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-08 05:35:25] 2025-10-08 05:35:14,243 | INFO     | 3873s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-10-08 05:35:25] 2025-10-08 05:35:15,356 | INFO     | PID=4068730 has CPU usage=2.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-08 05:35:25] 2025-10-08 05:35:15,356 | INFO     | .. there are 2 such processes running
[2025-10-08 05:35:25] 2025-10-08 05:35:15,356 | INFO     | found 0 job(s) in 20 queues
[2025-10-08 05:35:25] 2025-10-08 05:35:15,356 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-08 05:35:25] 2025-10-08 05:35:15,356 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-08 05:35:25] 2025-10-08 05:35:18,567 | INFO     | [monitor] cgroup control has ended
[2025-10-08 05:35:25] 2025-10-08 05:35:20,198 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 138840409950016)>', '<ExcThread(monitor, started 138839632893696)>']
[2025-10-08 05:35:25] 2025-10-08 05:35:20,382 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-08 05:35:25] 2025-10-08 05:35:20,382 | INFO     | [monitor] control thread has ended
[2025-10-08 05:35:25] 2025-10-08 05:35:25,223 | INFO     | all workflow threads have been joined
[2025-10-08 05:35:25] 2025-10-08 05:35:25,223 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-08 05:35:25] 2025-10-08 05:35:25,223 | INFO     | traces error code: 0
[2025-10-08 05:35:25] 2025-10-08 05:35:25,224 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-08 05:35:25] 2025-10-08 05:35:25,288 [wrapper] ==== pilot stdout END ====
[2025-10-08 05:35:25] 2025-10-08 05:35:25,290 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-08 05:35:25] 2025-10-08 05:35:25,292 [wrapper] pilotpid: 4068730
[2025-10-08 05:35:25] 2025-10-08 05:35:25,294 [wrapper] Pilot exit status: 0
[2025-10-08 05:35:25] 2025-10-08 05:35:25,301 [wrapper] pandaids: 6830520627
[2025-10-08 05:35:25] 2025-10-08 05:35:25,326 [wrapper] cleanup supervisor_pilot 1110393 4068734
[2025-10-08 05:35:25] 2025-10-08 05:35:25,328 [wrapper] Test setup, not cleaning
[2025-10-08 05:35:25] 2025-10-08 05:35:25,330 [wrapper] apfmon messages muted
[2025-10-08 05:35:25] 2025-10-08 05:35:25,332 [wrapper] ==== wrapper stdout END ====
[2025-10-08 05:35:25] 2025-10-08 05:35:25,334 [wrapper] ==== wrapper stderr END ====
[2025-10-08 05:35:25]  *** Error codes and diagnostics ***
[2025-10-08 05:35:25]     "exeErrorCode": 0,
[2025-10-08 05:35:25]     "exeErrorDiag": "",
[2025-10-08 05:35:25]     "pilotErrorCode": 0,
[2025-10-08 05:35:25]     "pilotErrorDiag": "",
[2025-10-08 05:35:25]  *** Listing of results directory ***
[2025-10-08 05:35:25] total 388136
[2025-10-08 05:35:25] -rw-r--r-- 1 ian ian    552446 Oct  4 22:48 pilot3.tar.gz
[2025-10-08 05:35:25] -rw-r--r-- 1 ian ian      5112 Oct  4 22:50 queuedata.json
[2025-10-08 05:35:25] -rwx------ 1 ian ian     36292 Oct  4 22:53 runpilot2-wrapper.sh
[2025-10-08 05:35:25] -rw-rw-r-- 1 ian ian       100 Oct  8 04:29 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-08 05:35:25] -rwxr-xr-x 1 ian ian      7986 Oct  8 04:29 run_atlas
[2025-10-08 05:35:25] -rw-rw-r-- 1 ian ian       105 Oct  8 04:29 job.xml
[2025-10-08 05:35:25] -rw-r--r-- 2 ian ian 214614903 Oct  8 04:29 EVNT.46376901._002534.pool.root.1
[2025-10-08 05:35:25] -rw-r--r-- 2 ian ian    565603 Oct  8 04:29 input.tar.gz
[2025-10-08 05:35:25] -rw-r--r-- 2 ian ian     15120 Oct  8 04:29 start_atlas.sh
[2025-10-08 05:35:25] drwxrwx--x 2 ian ian      4096 Oct  8 04:29 shared
[2025-10-08 05:35:25] -rw-rw-r-- 1 ian ian         0 Oct  8 04:29 boinc_setup_complete
[2025-10-08 05:35:25] -rw-rw-r-- 1 ian ian      9256 Oct  8 04:29 init_data.xml
[2025-10-08 05:35:25] -rw-rw-r-- 1 ian ian         0 Oct  8 04:29 boinc_lockfile
[2025-10-08 05:35:25] -rw-rw-r-- 1 ian ian      2518 Oct  8 04:30 pandaJob.out
[2025-10-08 05:35:25] -rw------- 1 ian ian    979841 Oct  8 04:30 agis_schedconf.cvmfs.json
[2025-10-08 05:35:25] -rw------- 1 ian ian   1560401 Oct  8 04:30 agis_ddmendpoints.agis.ALL.json
[2025-10-08 05:35:25] drwx------ 4 ian ian      4096 Oct  8 04:30 pilot3
[2025-10-08 05:35:25] -rw------- 1 ian ian 177258382 Oct  8 05:34 HITS.46376905._069855.pool.root.1
[2025-10-08 05:35:25] -rw------- 1 ian ian      1011 Oct  8 05:34 memory_monitor_summary.json
[2025-10-08 05:35:25] -rw------- 1 ian ian    250643 Oct  8 05:34 log.46376905._069855.job.log.tgz.1
[2025-10-08 05:35:25] -rw------- 1 ian ian        95 Oct  8 05:34 pilot_heartbeat.json
[2025-10-08 05:35:25] -rw-rw-r-- 1 ian ian       529 Oct  8 05:34 boinc_task_state.xml
[2025-10-08 05:35:25] -rw------- 1 ian ian      7722 Oct  8 05:34 heartbeat.json
[2025-10-08 05:35:25] -rw-rw-r-- 1 ian ian        27 Oct  8 05:35 wrapper_checkpoint.txt
[2025-10-08 05:35:25] -rw-rw-r-- 1 ian ian      8192 Oct  8 05:35 boinc_mmap_file
[2025-10-08 05:35:25] -rw------- 1 ian ian      5011 Oct  8 05:35 pilotlog.txt
[2025-10-08 05:35:25] -rw------- 1 ian ian    588888 Oct  8 05:35 log.46376905._069855.job.log.1
[2025-10-08 05:35:25] -rw------- 1 ian ian       357 Oct  8 05:35 output.list
[2025-10-08 05:35:25] -rw-rw-r-- 1 ian ian       620 Oct  8 05:35 runtime_log
[2025-10-08 05:35:25] -rw------- 1 ian ian    860160 Oct  8 05:35 result.tar.gz
[2025-10-08 05:35:25] -rw------- 1 ian ian       652 Oct  8 05:35 vmiMDmZJQP8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmkvMNDmJxkM7m.diag
[2025-10-08 05:35:25] -rw-rw-r-- 1 ian ian      8721 Oct  8 05:35 runtime_log.err
[2025-10-08 05:35:25] -rw-rw-r-- 1 ian ian     22141 Oct  8 05:35 stderr.txt
[2025-10-08 05:35:25] HITS file was successfully produced:
[2025-10-08 05:35:25] -rw------- 1 ian ian 177258382 Oct  8 05:34 shared/HITS.pool.root.1
[2025-10-08 05:35:25]  *** Contents of shared directory: ***
[2025-10-08 05:35:25] total 384112
[2025-10-08 05:35:25] -rw-r--r-- 2 ian ian 214614903 Oct  8 04:29 ATLAS.root_0
[2025-10-08 05:35:25] -rw-r--r-- 2 ian ian    565603 Oct  8 04:29 input.tar.gz
[2025-10-08 05:35:25] -rw-r--r-- 2 ian ian     15120 Oct  8 04:29 start_atlas.sh
[2025-10-08 05:35:25] -rw------- 1 ian ian 177258382 Oct  8 05:34 HITS.pool.root.1
[2025-10-08 05:35:25] -rw------- 1 ian ian    860160 Oct  8 05:35 result.tar.gz
05:35:26 (4055599): run_atlas exited; CPU time 14715.190191
05:35:26 (4055599): called boinc_finish(0)

</stderr_txt>
]]>

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