Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
06:05:07 (1476585): wrapper (7.7.26015): starting
06:05:07 (1476585): wrapper: running run_atlas (--nthreads 3)
[2025-10-08 06:05:07] Arguments: --nthreads 3
[2025-10-08 06:05:07] Threads: 3
[2025-10-08 06:05:07] Checking for CVMFS
[2025-10-08 06:05:07] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-08 06:05:07] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-08 06:05:07] Running cvmfs_config stat atlas.cern.ch
[2025-10-08 06:05:08] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-08 06:05:08] 2.9.2.0 635695 2413 80736 151457 0 57 27635221 36864001 0 130560 0 2206447 99.992 81726 782 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-08 06:05:08] CVMFS is ok
[2025-10-08 06:05:08] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-08 06:05:08] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-08 06:05:08] Further information can be found at the LHC@home message board.
[2025-10-08 06:05:08] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-08 06:05:08] Checking for apptainer binary...
[2025-10-08 06:05:08] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-08 06:05:08] Running /usr/bin/apptainer --version
[2025-10-08 06:05:08] apptainer version 1.4.1-1.1
[2025-10-08 06:05:08] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-08 06:05:08] magicA252
[2025-10-08 06:05:08] apptainer works
[2025-10-08 06:05:08] Set ATHENA_PROC_NUMBER=3
[2025-10-08 06:05:08] Set ATHENA_CORE_NUMBER=3
[2025-10-08 06:05:08] Starting ATLAS job with PandaID=6832163034
[2025-10-08 06:05:08] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-08 07:18:26]  *** The last 200 lines of the pilot log: ***
[2025-10-08 07:18:26] 2025-10-08 05:17:43,307 | INFO     | all data control threads have been joined
[2025-10-08 07:18:26] 2025-10-08 05:17:43,694 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-08 07:18:26] 2025-10-08 05:17:43,694 | INFO     | aborting loop
[2025-10-08 07:18:26] 2025-10-08 05:17:43,943 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-08 07:18:26] 2025-10-08 05:17:44,070 | INFO     | [job] retrieve thread has finished
[2025-10-08 07:18:26] 2025-10-08 05:17:44,070 | INFO     | [job] queue monitor thread has finished
[2025-10-08 07:18:26] 2025-10-08 05:17:44,105 | INFO     | [job] control thread has finished
[2025-10-08 07:18:26] 2025-10-08 05:17:44,110 | INFO     | all payload control threads have been joined
[2025-10-08 07:18:26] 2025-10-08 05:17:44,133 | INFO     | [payload] failed_post thread has finished
[2025-10-08 07:18:26] 2025-10-08 05:17:44,313 | INFO     | [data] control thread has finished
[2025-10-08 07:18:26] 2025-10-08 05:17:44,655 | INFO     | [payload] validate_post thread has finished
[2025-10-08 07:18:26] 2025-10-08 05:17:44,700 | INFO     | [job] job monitor thread has finished
[2025-10-08 07:18:26] 2025-10-08 05:17:45,116 | INFO     | [payload] control thread has finished
[2025-10-08 07:18:26] 2025-10-08 05:17:45,164 | INFO     | [payload] execute_payloads thread has finished
[2025-10-08 07:18:26] 2025-10-08 05:17:45,165 | INFO     | [data] copytool_in thread has finished
[2025-10-08 07:18:26] 2025-10-08 05:17:45,438 | INFO     | [job] validate thread has finished
[2025-10-08 07:18:26] 2025-10-08 05:17:45,511 | INFO     | [job] create_data_payload thread has finished
[2025-10-08 07:18:26] 2025-10-08 05:17:45,555 | INFO     | [payload] validate_pre thread has finished
[2025-10-08 07:18:26] 2025-10-08 05:17:45,949 | INFO     | [data] copytool_out thread has finished
[2025-10-08 07:18:26] 2025-10-08 05:17:47,185 | INFO     | [data] queue_monitor thread has finished
[2025-10-08 07:18:26] 2025-10-08 05:17:53,989 | INFO     | job.realtimelogging is not enabled
[2025-10-08 07:18:26] 2025-10-08 05:17:54,994 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-08 07:18:26] 2025-10-08 05:18:13,630 | INFO     | PID=1480301 has CPU usage=1.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-08 07:18:26] 2025-10-08 05:18:13,631 | INFO     | found 0 job(s) in 20 queues
[2025-10-08 07:18:26] 2025-10-08 05:18:13,631 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-08 07:18:26] 2025-10-08 05:18:13,631 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-08 07:18:26] 2025-10-08 05:18:20,104 | INFO     | [monitor] cgroup control has ended
[2025-10-08 07:18:26] 2025-10-08 05:18:21,014 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140514857498432)>', '<ExcThread(monitor, started 140514150053632)>']
[2025-10-08 07:18:26] 2025-10-08 05:18:21,656 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-08 07:18:26] 2025-10-08 05:18:21,656 | INFO     | [monitor] control thread has ended
[2025-10-08 07:18:26] 2025-10-08 05:18:26,040 | INFO     | all workflow threads have been joined
[2025-10-08 07:18:26] 2025-10-08 05:18:26,040 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-08 07:18:26] 2025-10-08 05:18:26,040 | INFO     | traces error code: 0
[2025-10-08 07:18:26] 2025-10-08 05:18:26,040 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-08 07:18:26] 2025-10-08 05:18:26,089 [wrapper] ==== pilot stdout END ====
[2025-10-08 07:18:26] 2025-10-08 05:18:26,092 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-08 07:18:26] 2025-10-08 05:18:26,094 [wrapper] pilotpid: 1480301
[2025-10-08 07:18:26] 2025-10-08 05:18:26,097 [wrapper] Pilot exit status: 0
[2025-10-08 07:18:26] 2025-10-08 05:18:26,104 [wrapper] pandaids: 6832163034
[2025-10-08 07:18:26] 2025-10-08 05:18:26,121 [wrapper] cleanup supervisor_pilot 1496054 1480302
[2025-10-08 07:18:26] 2025-10-08 05:18:26,124 [wrapper] Test setup, not cleaning
[2025-10-08 07:18:26] 2025-10-08 05:18:26,126 [wrapper] apfmon messages muted
[2025-10-08 07:18:26] 2025-10-08 05:18:26,129 [wrapper] ==== wrapper stdout END ====
[2025-10-08 07:18:26] 2025-10-08 05:18:26,131 [wrapper] ==== wrapper stderr END ====
[2025-10-08 07:18:26]  *** Error codes and diagnostics ***
[2025-10-08 07:18:26]     "exeErrorCode": 0,
[2025-10-08 07:18:26]     "exeErrorDiag": "",
[2025-10-08 07:18:26]     "pilotErrorCode": 0,
[2025-10-08 07:18:26]     "pilotErrorDiag": "",
[2025-10-08 07:18:26]  *** Listing of results directory ***
[2025-10-08 07:18:26] total 389192
[2025-10-08 07:18:26] -rw-r--r-- 1 boinc boinc    552446 Oct  6 01:59 pilot3.tar.gz
[2025-10-08 07:18:26] -rw-r--r-- 1 boinc boinc      5112 Oct  6 02:07 queuedata.json
[2025-10-08 07:18:26] -rwx------ 1 boinc boinc     36292 Oct  6 02:07 runpilot2-wrapper.sh
[2025-10-08 07:18:26] -rw-r--r-- 1 boinc boinc       100 Oct  8 06:05 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-08 07:18:26] -rwxr-xr-x 1 boinc boinc      7986 Oct  8 06:05 run_atlas
[2025-10-08 07:18:26] -rw-r--r-- 1 boinc boinc       105 Oct  8 06:05 job.xml
[2025-10-08 07:18:26] -rw-r--r-- 2 boinc boinc 213127444 Oct  8 06:05 EVNT.46376901._003704.pool.root.1
[2025-10-08 07:18:26] drwxrwx--x 2 boinc boinc      4096 Oct  8 06:05 shared
[2025-10-08 07:18:26] -rw-r--r-- 2 boinc boinc    565601 Oct  8 06:05 input.tar.gz
[2025-10-08 07:18:26] -rw-r--r-- 2 boinc boinc     15120 Oct  8 06:05 start_atlas.sh
[2025-10-08 07:18:26] -rw-r--r-- 1 boinc boinc         0 Oct  8 06:05 boinc_setup_complete
[2025-10-08 07:18:26] -rw-r--r-- 1 boinc boinc      6448 Oct  8 06:05 init_data.xml
[2025-10-08 07:18:26] -rw-r--r-- 1 boinc boinc         0 Oct  8 06:05 boinc_lockfile
[2025-10-08 07:18:26] -rw-r--r-- 1 boinc boinc      2519 Oct  8 06:05 pandaJob.out
[2025-10-08 07:18:26] -rw------- 1 boinc boinc    979841 Oct  8 06:05 agis_schedconf.cvmfs.json
[2025-10-08 07:18:26] -rw------- 1 boinc boinc   1560401 Oct  8 06:05 agis_ddmendpoints.agis.ALL.json
[2025-10-08 07:18:26] drwx------ 4 boinc boinc      4096 Oct  8 06:05 pilot3
[2025-10-08 07:18:26] -rw------- 1 boinc boinc 179737770 Oct  8 07:17 HITS.46376905._100265.pool.root.1
[2025-10-08 07:18:26] -rw-r--r-- 1 boinc boinc       529 Oct  8 07:17 boinc_task_state.xml
[2025-10-08 07:18:26] -rw------- 1 boinc boinc      1031 Oct  8 07:17 memory_monitor_summary.json
[2025-10-08 07:18:26] -rw------- 1 boinc boinc        95 Oct  8 07:17 pilot_heartbeat.json
[2025-10-08 07:18:26] -rw------- 1 boinc boinc    253811 Oct  8 07:17 log.46376905._100265.job.log.tgz.1
[2025-10-08 07:18:26] -rw------- 1 boinc boinc      7758 Oct  8 07:17 heartbeat.json
[2025-10-08 07:18:26] -rw-r--r-- 1 boinc boinc      8192 Oct  8 07:18 boinc_mmap_file
[2025-10-08 07:18:26] -rw-r--r-- 1 boinc boinc        27 Oct  8 07:18 wrapper_checkpoint.txt
[2025-10-08 07:18:26] -rw------- 1 boinc boinc      4824 Oct  8 07:18 pilotlog.txt
[2025-10-08 07:18:26] -rw------- 1 boinc boinc    642576 Oct  8 07:18 log.46376905._100265.job.log.1
[2025-10-08 07:18:26] -rw------- 1 boinc boinc       357 Oct  8 07:18 output.list
[2025-10-08 07:18:26] -rw-r--r-- 1 boinc boinc       620 Oct  8 07:18 runtime_log
[2025-10-08 07:18:26] -rw------- 1 boinc boinc    911360 Oct  8 07:18 result.tar.gz
[2025-10-08 07:18:26] -rw-r--r-- 1 boinc boinc      8792 Oct  8 07:18 runtime_log.err
[2025-10-08 07:18:26] -rw------- 1 boinc boinc       661 Oct  8 07:18 IshMDmdwnP8n9Rq4apOajLDm4fhM0noT9bVof3QYDm5yHMDmWt1njn.diag
[2025-10-08 07:18:26] -rw-r--r-- 1 boinc boinc      6927 Oct  8 07:18 stderr.txt
[2025-10-08 07:18:26] HITS file was successfully produced:
[2025-10-08 07:18:26] -rw------- 1 boinc boinc 179737770 Oct  8 07:17 shared/HITS.pool.root.1
[2025-10-08 07:18:26]  *** Contents of shared directory: ***
[2025-10-08 07:18:26] total 385136
[2025-10-08 07:18:26] -rw-r--r-- 2 boinc boinc 213127444 Oct  8 06:05 ATLAS.root_0
[2025-10-08 07:18:26] -rw-r--r-- 2 boinc boinc    565601 Oct  8 06:05 input.tar.gz
[2025-10-08 07:18:26] -rw-r--r-- 2 boinc boinc     15120 Oct  8 06:05 start_atlas.sh
[2025-10-08 07:18:26] -rw------- 1 boinc boinc 179737770 Oct  8 07:17 HITS.pool.root.1
[2025-10-08 07:18:26] -rw------- 1 boinc boinc    911360 Oct  8 07:18 result.tar.gz
07:18:48 (1476585): run_atlas exited; CPU time 12437.233524
07:18:48 (1476585): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN